Tip-Specific Functionalization of Gold Nanorods for Plasmonic Biosensing: Effect of Linker Chain Length.

Gold nanorods are promising platforms for label-free biosensing. We have functionalized gold nanorods with biotin thiol linkers of increasing chain length and evaluated their ability in the molecular detection of streptavidin. We have found an unexpected effect of the increase in linker length, which resulted in a substantial improvement of the plasmon response at surface saturation. The plasmon peak shift increased from 5 to 14 nm, i.e., more than twice the response, between the short and long biotin linkers. This effect is observed only for site-selective tip functionalization, whereas for a full biotin coating there is no improvement observed with the linker length. The improved plasmon response for tip functionalization is attributed to low biotin coverage but is directed to the most sensitive regions, which, combined with a longer chain linker, reduces the steric hindrance for streptavidin binding on the rod's surface. The model sensors were further characterized by measuring their dose-response curves and binding kinetic assays. Simulations of the discrete dipole approximation give theoretical plasmon shifts that compare well with the experimental ones for the long linker but not with those of the short linker, thus suggesting that steric hindrance affects the latter. Our results highlight the importance of specifically functionalizing the plasmonic hot spots in nanoparticle sensors with the adequate density of receptors in order to maximize their response.

Photochromism of a spiropyran and a diarylethene in bile salt aggregates in aqueous solution.

Bile salt aggregates incorporate aqueous-insoluble photochromic compounds. The photochromism of a spiropyran (1, 1',3',3'-trimethyl-6-nitrospiro[2H-1]-benzopyran-2,2'-indoline) and a diarylethene derivative (2, 1,2-bis(2,4-dimethyl-5-phenyl-3-thienyl)-3,3,4,4,5,5-hexafluoro-1-cyclopentene) was quantified in different bile salt aggregates. These aggregates act as efficient hosts to solubilize aqueous insoluble photochromic compounds where either both isomers are nonpolar, for example, 2, or compounds where one isomer is hydrophobic and the other is more polar, for example, 1. Methodology was developed to determine molar absorptivity coefficients for solutions containing both isomers and to determine the photoconversion quantum yields under continuous irradiation. The methods were validated by determining parameters in homogeneous solution, which were the same as previously reported. In the case of the colored isomer of 1, the molar extinction coefficient in ethanol at 537 nm ((3.68 ± 0.03) × 10(4) cm(-1) M(-1)) was determined with higher precision. The quantum yields for the photoconversion between the isomers of 2 were shown to be the same in cyclohexane and in the aggregates of sodium cholate (NaCh), deoxycholate (NaDC), and taurocholate (NaTC), showing that bile salt aggregates are not sufficiently rigid to affect the equilibrium between the two possible conformers of the colorless form. In contrast, for 1 the quantum yields for the conversion from the colorless to the colored isomer were higher in bile salts than in ethanol, and the quantum yield was highest in the more hydrophobic aggregates of NaDC, followed by NaCh and then NaTC. The structure of the bile salt had no effect on the quantum yield for the conversion of the colored to the colorless isomer of 1, but these values were higher than in ethanol. For all three bile salts, the absorption maximum for the colored form of 1 suggested that this isomer was located in an environment that is more polar than ethanol.

Triplet sensitized photolysis of a vinyl azide: direct detection of a triplet vinyl azide and nitrene.

Photolysis of vinylazide 1, which has a built-in acetophenone triplet sensitizer, in argon-saturated toluene results in azirine 2, whereas irradiation in oxygen-saturated toluene yields cyanide derivatives 3 and 4. Laser flash photolysis of azide 1 in argon-saturated acetonitrile shows formation of vinylnitrene 1c, which has a λmax at ∼300 nm and a lifetime of ∼1 ms. Vinylnitrene 1c is formed with a rate constant of 4.25 × 10(5) s(-1) from triplet 1,2-biradical 1b. Laser flash photolysis of 1 in oxygen-saturated acetonitrile results in 1c-O (λmax = 430 nm, τ ≈ 420 µs acetonitrile). Density functional theory (DFT) calculations were used to aid in the characterization of the intermediates formed upon irradiation of azide 1 and to validate the proposed mechanism for its photoreactivity.

Studies of the solvatochromic emission properties of N-aroylurea derivatives I: Influence of the substitution pattern.

The influence of the substituent of the N-aroylurea functionality on the solvatochromic properties of this class of compounds was investigated with eight examples. The absorption spectra of these compounds exhibit the characteristic spectroscopic properties of the corresponding arene fragment and are only slightly dependent on the solvent. In contrast, all investigated aroylurea derivatives exhibit a strong solvatochromism with a good linear correlation between the emission energy and the acceptor numbers (AN) of the solvents; that is, the emission maximum shifts bathochromically (Δλ = 50-93 nm) with increasing AN. Furthermore, in media with increasing viscosity, as established in glycerol or ethanol solutions with decreasing temperature, the emission maxima are significantly shifted to shorter wavelengths and the full width at half maximum (FWHM) changes. All experimental data point to two emitting states, namely the locally excited (LE) state and the charge-transfer (CT) state. Thus, after initial photoexcitation to the LE state an internal charge transfer (ICT) takes place due to the donor-acceptor interplay between the arene unit and the N-acylureido functionality, mainly assisted by the intramolecular hydrogen bond between the terminal NH group and the aryl-substituted carbonyl functionality, hence interconverting the latter to a stronger acceptor. In the polarized CT state the acylurea unit develops a negative charge, which, after solvent relaxation, is stabilized by solvents with high acceptor number. Time-resolved emission spectroscopy revealed additional conformational changes in the excited state. Two emissive species were identified at room temperature, whose lifetimes depend strongly on the chemical environment. In addition, time-resolved emission spectra (TRES) showed red-shifted emission bands at longer delays after the excitation pulse in polar solvents. These findings are rationalized by the presence of two different emitting rotational conformers.

Effect of terbium(III) on the binding of aromatic guests with sodium taurocholate aggregates.

The effect of binding Tb(3+) to sodium taurocholate aggregates containing polyaromatic hydrocarbon guests was examined using pyrene and 1-ethylnaphthalene as guests that bind to the primary aggregate, and 1-naphthyl-1-ethanol as a secondary aggregate guest. Time-resolved fluorescence quenching studies were used to study the binding site properties, while laser flash photolysis quenching studies provided information on the dynamics of the guest-aggregate system. Both the primary and secondary aggregate binding sites became more compact in the presence of bound Tb(3+), while only the primary aggregate became more accessible to anionic molecules. The binding dynamics for the guest-primary aggregate system became faster when Tb(3+) was bound to the aggregate. In contrast, for the guest-secondary aggregate the presence of Tb(3+) resulted in a small decrease in the dissociation rate constant. The influence of bound Tb(3+) on the primary and secondary bile salt aggregates is significantly different, which affects how these aggregates can be used as supramolecular host systems to modify guest reactivity.

Photolysis of (3-methyl-2H-azirin-2-yl)-phenylmethanone: direct detection of a triplet vinylnitrene intermediate.

The photoreactivity of (3-methyl-2H-azirin-2-yl)-phenylmethanone, 1, is wavelength-dependent (Singh et al. J. Am. Chem. Soc. 1972, 94, 1199-1206). Irradiation at short wavelengths yields 2P, whereas longer wavelengths produce 3P. Laser flash photolysis of 1 in acetonitrile using a 355 nm laser forms its triplet ketone (T(1K), broad absorption with λ(max) ~ 390-410 nm, τ ~ 90 ns), which cleaves and yields triplet vinylnitrene 3 (broad absorption with λ(max) ~ 380-400 nm, τ = 2 µs). Calculations (B3LYP/6-31+G(d)) reveal that T(1K) of 1 is located 67 kcal/mol above its ground state (S(0)) and has a long C-N bond (1.58 Å), and the calculated transition state to form 3 is only 1 kcal/mol higher in energy than T(1K) of 1. The calculations show that 3 has significant 1,3-carbon iminyl biradical character, which explains why 3 reacts efficiently with oxygen and decays by intersystem crossing to the singlet surface. Photolysis of 1 in argon matrixes at 14 K produced ketene imine 7, which presumably is formed from 3 intersystem crossing to 7. In comparison, photolysis of 1 in methanol with a 266 nm laser produces mainly ylide 2 (λ(max) ~ 380 nm, τ ~ 6 µs, acetonitrile), which decays to form 2P. Ylide 2 is formed via singlet reactivity of 1, and calculations show that the first singlet excited state of the azirine chromophore (S(1A)) is located 113 kcal/mol above its S(0) and that the singlet excited state of the ketone (S(1K)) is 85 kcal/mol. Furthermore, the transition state for cleaving the C-C bond in 1 to form 2 is located 49 kcal/mol above the S(0) of 1. Thus, we theorize that internal conversion of S(1A) to a vibrationally hot S(0) of 1 forms 2, whereas intersystem crossing from S(1K) to T(1K) results in 3.

Effect of sodium chloride on the binding of polyaromatic hydrocarbon guests with sodium cholate aggregates.

Sodium cholate aggregates are adaptable host systems. The effect of changing the ionic strength with the addition of NaCl on the properties for guest binding to sodium cholate aggregates was investigated by using pyrene, perylene and 1-ethylnaphthalene as guests. Fluorescence, anisotropy and laser flash photolysis studies provided information on the protection efficiency of the aggregate bound guest, and provided information on the dynamics and correlation times for the host-guest system. Different trends for the protection efficiency of the bound guests were observed when the NaCl concentration was raised depending on the charge of the aqueous solubilized quencher. The increase in ionic strength was also shown to lengthen the correlation time of the aggregate bound guest and led to faster dynamics for the host-guest complex. These results show that the properties of sodium cholate aggregates as a supramolecular host system are significantly altered with changes in the ionic strength of the medium.

Bio-supramolecular photochirogenesis with molecular chaperone: enantiodifferentiating photocyclodimerization of 2-anthracenecarboxylate mediated by prefoldin.

Photocyclodimerization of 2-anthracenecarboxylate mediated by molecular chaperone protein was performed for the first time to afford chiral syn-head-to-tail and anti-head-to-head dimers (2 and 3) in 10% and 16% enantiomeric excess, respectively, with enhanced yields of sterically and electrostatically less-favored head-to-head dimers (3 and 4).

Effect of alkyl substituents on photorelease from butyrophenone derivatives.

Photolysis of 1a yields 4a in argon-saturated methanol, whereas 1b is photostable. Laser flash photolysis of 1a in acetonitrile shows formation of biradical 2a (lambda(max) = 340 nm, tau = approximately 60 ns), which undergoes intersystem crossing to form Z-3a (lambda(max) = 380 nm, tau = 270 ns) and E-3a (lambda(max) = 380 nm, tau = 300 ms). Z-3a regenerates the starting material, whereas E-3b undergoes intramolecular lactonization to release the alcohol moiety and form 4a. Similar laser flash photolysis of 1b shows formation of biradical 2b (lambda(max) = 340 nm, tau = 1.9 micros in acetonitrile), which is longer-lived than 2a is. However, 2b only undergoes intersystem crossing to form Z-3b (lambda(max) = 380 nm, tau = 4.3 micros). Calculations demonstrate that intramolecular pseudo hydrogen bonding between the OH moiety and the radical centered on the isopropyl carbon in 2b and the bulkiness of the isopropyl group prevent the necessary rotation to form E-3b. In comparison, 2a does not form an intramolecular pseudo hydrogen bond between the methylene radical center and the OH group, and as a consequence, it undergoes intersystem crossing to form both E- and Z-3a.

Identification and characterization of binding sites on S100A7, a participant in cancer and inflammation pathways.

S100A7 (psoriasin) is a member of the S100 family of signaling proteins. It is implicated in and considered a therapeutic target for inflammation and cancer, yet no small molecule ligands for S100A7 have been identified. To begin the development of specific small molecule inhibitors of S100A7 function, we have used a series of surface binding fluorescent dyes to probe the surface hydrophobic sites. Two naphthalene-based dyes (2,6-ANS and 1,8-ANS) were found to bind S100A7 in a distinct cleft. We characterized the binding interaction by determining both the structure of S100A7 bound to 2,6-ANS and the structure of S100A7 bound to 1,8-ANS to 1.6 A. In both cases, two molecules of dye were docked such that the naphthalene groups were positioned in two symmetry-related grooves that are formed by the N-terminal helices of each monomer. We observed that Met12 acts as a gatekeeper to the binding cleft, adopting an "open" conformation for the more elongated 2,6-ANS while remaining in a "closed" conformation for the more compact 1,8-ANS. Steady-state fluorescence experiments revealed that S100A7 binds two copies of 2,6-ANS, each with a K(d) of 125 muM. Time-resolved fluorescence lifetime measurements indicated that the two molecules of 2,6-ANS bind in two independent binding sites with different fluorescence lifetimes, suggesting that the S100A7 homodimer is not perfectly symmetric in solution. Isothermal titration calorimetry studies demonstrate that S100A7 has a higher affinity for 2,6-ANS than 1,8-ANS. Yeast two-hybrid studies were also used to probe contributions of individual residues of an S100A7 triple mutant with respect to Jab1 binding. Mutation of Leu78, which forms part of the Met12 cleft occupied by 2,6-ANS, reduced the level of Jab1 binding, suggesting a potentially important role for the Met12 hydrophobic pocket in defining a Jab1 interface. Additional Y2H studies also delineate contributions of Gln88 and in particular Asp56 that shows the most significant abrogated binding to Jab1. Collectively, these data suggest a complex interaction between S100A7 and the much larger Jab1. These studies form the basis for the development of small molecule reporters and modifiers of S100A7 form and function.

Photophysical studies on the supramolecular photochirogenesis for the photocyclodimerization of 2-anthracenecarboxylate within human serum albumin.

The mechanism for the chirogenesis in the photocyclodimerization of 2-anthracenecarboxylate (AC) bound to human serum albumin (HSA) was investigated using time-resolved fluorescence measurements in the presence of HSA inhibitors and/or an AC singlet excited state quencher. The photophysical studies were correlated with product studies to explain the high enantiomeric excess (ee) observed for the chiral photoproducts. AC binds to HSA in five different binding sites with decreasing affinities. AC bound to the sites with the highest affinity (sites 1 and 2) is unreactive, and the AC can be displaced from these sites by the use of known inhibitors. Time-resolved fluorescence studies isolated a singlet excited state AC bound to a site which exhibited moderate protection from interactions with species in the aqueous phase. This site was assigned to binding site 3, where the chiral photoproducts are formed with a high ee based on the correlation of the photophysical studies with product studies in the presence of a quencher. These results show that the use of inhibitors for multiple binding site proteins is useful to uncover the properties of binding sites for which guest binding has only moderate affinity and where the photophysical characterization of these binding sites is not possible in the absence of inhibitors.

Supramolecular complexation and enantiodifferentiating photocyclodimerization of 2-anthracenecarboxylic acid with 4-aminoprolinol derivatives as chiral hydrogen-bonding templates.

The photochirogenesis of 2-anthracenecarboxylic acid (AC) complexed to a hydrogen-bonding template (TKS159) was investigated to obtain mechanistic information on how chirogenesis is achieved for the dimerization of AC. Complexation of AC to TKS159 leads to the shielding of one of the two surfaces of the prochiral AC molecule. The two diastereomeric AC-TKS complexes, i.e., re-AC-TKS and si-AC-TKS, were characterized by changes in the UV-vis, fluorescence, and circular dichroism spectra and excited-state lifetimes. The ee is not simply determined by the diastereomeric ratio of the re- and si-AC-TKS complexes but also depends on the relative lifetimes of the diastereomeric complexes. The relative population of the re and si complexes was calculated from the enantiomeric excess (ee) for the products, taking into account the relative lifetimes of the two complexes. These studies established a protocol that can be used to reveal the mechanism for photochirogenesis by investigating the ground state and the excited state behavior of supramolecular systems.

Intramolecular H-atom abstraction in gamma-azido-butyrophenones: formation of 1,5 ketyl iminyl radicals.

Photolysis of gamma-azidobutyrophenone derivatives yields 1,4 ketyl biradicals via intramolecular H-atom abstraction. The 1,4 ketyl biradicals expel a nitrogen molecule to form 1,5 ketyl iminyl biradicals, which decay by ring closure to form a new carbon-nitrogen bond. The 1,5 ketyl iminyl biradicals were characterized with transient spectroscopy. In argon/nitrogen-saturated solutions, the biradicals have lambda(max) approximately 300 nm and tau = 15 micros. DFT-TD calculations were used to support the proposed mechanism for formation of the 1,5 ketyl iminyl radicals.

Ligand-interaction kinetics of the pheromone- binding protein from the gypsy moth, L. dispar: insights into the mechanism of binding and release.

The pheromone-binding proteins (PBPs), which exist at a high concentration in the sensillum lymph surrounding olfactory neurons, are proposed to be important in pheromone detection and discrimination in insects. Here, we present a systematic study of PBP-ligand interaction kinetics. We find that PBP2, from the gypsy moth, Lymantria dispar, associates and dissociates slowly with its biofunctional ligands, (+)- and (-)-disparlure. Tryptophan anisotropy measurements detect PBP multimers in solution as well as an increase in the multimeric state of the protein upon long exposure to ligand. We propose a kinetic model that includes monomer/multimer equilibria and a two-step binding process: (1) external binding of the pheromone assisted by the C terminus of PBP2, and (2) slow embedding of the pheromone into the internal pocket. This experimentally derived model sheds light on the potential biological function and mechanism of PBPs as ligand scavengers.

Supramolecular photochirogenesis with biomolecules. Mechanistic studies on the enantiodifferentiation for the photocyclodimerization of 2-anthracenecarboxylate mediated by bovine serum albumin.

Photophysics and photochemistry of 2-anthracenecarboxylate (AC) bound to bovine serum albumin (BSA) were investigated in detail for the first time by electronic absorption, circular dichroism (CD), steady-state and time-resolved fluorescence, fluorescence quenching, and product analysis studies. Through the spectroscopic investigations, it was revealed that the four independent binding pockets of BSA, which are known to accommodate 1, 3, 2, and 3 AC molecules in the order of decreasing affinity, are distinctly different in hydrophobicity, chiral environment, and accessibility. Interestingly, AC bound to site 1 gave highly structured fluorescence with dual lifetimes of 4.8 and 2.1 ns in an intensity ratio of 3:2, which may be assigned to the existence of two positional or orientational isomers within the very hydrophobic site 1. In contrast, the lifetime of AC in site 2 was much longer (13.3 ns), and ACs in sites 3 and 4 have broader fluorescence spectra with lifetimes that were practically indistinguishable from that in bulk water (15.8 ns). Although each of sites 2-4 simultaneously binds multiple AC molecules, no CD exciton coupling or static fluorescence quenching was detected, indicating that ACs bound to each site are not in close proximity to each other. Quenching studies with nitromethane further confirmed the significant difference in accessibility among the binding sites; thus, ACs bound to sites 1 and 2 are highly protected from the attack of the quencher, affording 32 and 10 times smaller rate constants than that for free AC in water. Product studies in the presence and absence of nitromethane more clearly revealed the photochirogenic performance of each binding site. Although the addition of nitromethane did not greatly alter the product distribution, the enantiomeric excesses (ee's) of chiral cycloadducts 2 and 3 were critically manipulated by selectively retarding the photoreaction occurring at the more accessible binding sites. Thus, the highest ee of 38% was obtained for 2 in the presence of 18 mM nitromethane, while the highest ee of 58% was attained for 3 in the absence of nitromethane, both at [AC]/[BSA]=3.6.

Dual fluorescence of 2-methoxyanthracene derivatives.

The time-resolved emission properties of selected anthracene derivatives, namely anthracene (1a), 2-methylanthracene (1b), 2-chloroanthracene (1c), 2-methoxyanthracene (1d), 2-methoxy-6-methylanthracene (1e), 2-(N,N'-dicyclohexylureidocarbonyl)-6-methoxyanthrace ne (1f), 2-(6-methoxyanthr-2-yl)-4,4-dimethyl-2-oxazoline (1g), 2-(6-methoxyanthr-2-yl)-pyridine (1h), and N-cyclohexylanthracene-2-carboxamide (1i) were investigated. In contrast to anthracene (1a), 1b, and 1c, the 2-methoxy-substituted anthracene derivatives 1d-1h exhibit two emission lifetimes. The determination of the lifetimes at different emission wavelengths and additional time-resolved emission spectroscopy (TRES) reveal that the dual emission originates from two different, interconvertible emissive species, with the s-cis and s-trans conformation relative to the exocyclic C2-O bond. The energy difference between the two emissive species is very small (<0.1 eV) both in the ground and in the excited state. The larger energy difference between the conformers in the excited-state is responsible for the interconversion within the singlet excited-state lifetimes of the s-cis into the s-trans conformations leading to coupled decay kinetics. The proposed mechanism for the dual emission was qualitatively supported by theoretical studies on CASSCF and DFT level. In addition, the emission lifetimes of the fluoride- and pH-sensitive fluorescent probes 1f and 1g change upon addition of fluoride or acid, respectively, so that in these cases the detection of the fluorescence lifetime may be used complementary to the steady-state fluorimetric detection of these analytes.

Beta-phenyl quenching of triplet excited ketones: how critical is the geometry for deactivation?

The phenomenon of beta-phenyl quenching has been examined by laser-flash photolysis in a series of alpha- and/or beta-substituted ketones 4-8 with similar excited-state characteristics. It is found that alpha-substitution markedly increases the triplet lifetimes in contrast to beta-substitution. The force field calculations for the various staggered conformers of ketones 4-6 and 8-syn show that the lowest-energy conformation in all these ketones has the carbonyl group and the beta-phenyl ring gauche to each other. Despite this geometrical requirement, the longer lifetimes observed are interpreted as being due to the influence of the alpha-substituent on the rotational freedom of the planar benzoyl moiety as a whole. The experimental results are suggestive of the attainment of what appears to be a critical geometry for quenching. This scenario may be likened to Norrish type II reactions, where the alpha-substituent has long been known to suppress the elimination pathway and promote Yang cyclization. In addition, we have shown that the diastereomers of alpha,beta-disubstituted ketones exhibit distinct lifetimes.

Luminescence of ruthenium halide complexes containing a hemilabile phosphine pyrenyl ether ligand.

A series of Ru(II) complexes, tcc-RuX2(POC4Pyr-P,O)2 (X = Cl (3), Br (4), I (5)), containing the hemilabile phosphine pyrenyl ether ligand 4-{2-(diphenylphosphino)phenoxy}butylpyrene (POC4Pyr (1)) are reported. The synthesis and spectroscopic properties of both the ligand, POC4pyr (1), and ligand oxide, P(=O)OC4pyr 2, and the solid-state structure of 1 are reported. Complexes 3-5 react rapidly with CO to give complexes ttt-RuX2(CO)2(POC4pyr-P)2 (X = Cl (6), Br (7), I (8)). No pyrene excimer emission is detected from 3-5; however, different intensities of excimer emission are observed for 6-8. The intensity of excimer emission decreases through the series, with 6 showing the most intense response. The emission is solely due to intramolecular pyrene excimers at low concentrations (< or =10(-4) M). Comparison of the UV-vis and steady-state fluorescence spectra shows overlap between the low energy d-d absorption of 7 and 8 with excimer emission (480 nm), suggesting nonradiative energy transfer may be occurring. Once excess CO is removed, complexes 6-8 isomerize to cis-dicarbonyl complexes cct-RuX2(CO)2(POC4Pyr-P)2 (X = Cl (9), Br (10), I (11)). The intensity of excimer emission from 9-11 increases with respect to the excimer emission observed for 6-8, with 9 showing a significant increase in excimer intensity.