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1.
Acta Crystallogr D Struct Biol ; 80(Pt 5): 328-335, 2024 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-38606665

RESUMO

The Swiss Light Source facilitates fragment-based drug-discovery campaigns for academic and industrial users through the Fast Fragment and Compound Screening (FFCS) software suite. This framework is further enriched by the option to utilize the Smart Digital User (SDU) software for automated data collection across the PXI, PXII and PXIII beamlines. In this work, the newly developed HEIDI webpage (https://heidi.psi.ch) is introduced: a platform crafted using state-of-the-art software architecture and web technologies for sample management of rotational data experiments. The HEIDI webpage features a data-review tab for enhanced result visualization and provides programmatic access through a representational state transfer application programming interface (REST API). The migration of the local FFCS MongoDB instance to the cloud is highlighted and detailed. This transition ensures secure, encrypted and consistently accessible data through a robust and reliable REST API tailored for the FFCS software suite. Collectively, these advancements not only significantly elevate the user experience, but also pave the way for future expansions and improvements in the capabilities of the system.


Assuntos
Descoberta de Drogas , Ensaios de Triagem em Larga Escala , Software , Ensaios de Triagem em Larga Escala/métodos , Descoberta de Drogas/métodos , Interface Usuário-Computador , Bibliotecas de Moléculas Pequenas , Cristalografia por Raios X/métodos
2.
Sci Rep ; 7(1): 16358, 2017 11 27.
Artigo em Inglês | MEDLINE | ID: mdl-29180780

RESUMO

We present combined in situ X-ray diffraction and high-speed imaging to monitor the phase evolution upon cyclic rapid laser heating and cooling mimicking the direct energy deposition of Ti-6Al-4V in real time. Additive manufacturing of the industrially relevant alloy Ti-6Al-4V is known to create a multitude of phases and microstructures depending on processing technology and parameters. Current setups are limited by an averaged measurement through the solid and liquid parts. In this work the combination of a micro-focused intense X-ray beam, a fast detector and unidirectional cooling provide the spatial and temporal resolution to separate contributions from solid and liquid phases in limited volumes. Upon rapid heating and cooling, the ß â†” α' phase transformation is observed repeatedly. At room temperature, single phase α' is observed. Secondary ß-formation upon formation of α' is attributed to V partitioning to the ß-phase leading to temporary stabilization. Lattice strains in the α'-phase are found to be sensitive to the α' → ß phase transformation. Based on lattice strain of the ß-phase, the martensite start temperature is estimated at 923 K in these experiments. Off-axis high speed imaging confirms a technically relevant solidification front velocity and cooling rate of 10.3 mm/s and 4500 K/s, respectively.

3.
Mol Cell ; 8(6): 1313-25, 2001 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-11779506

RESUMO

PSD-95/SAP90 is a member of the MAGUK superfamily. In excitatory synapses, PSD-95 clusters receptors and ion channels at specific sites in the postsynaptic membrane and organizes downstream signaling and cytoskeletal molecules. We have determined the crystal structures of the apo and GMP-bound forms to 2.3 and 2.0 A resolutions, respectively, of a fragment containing the SH3, HOOK, and guanylate kinase (GK) domains of PSD-95. We observe an intramolecular interaction between the SH3 and GK domains involving the formation of a beta sheet including residues N- and C-terminal to the GK domain. Based on amino acid conservation and mutational data available in the literature, we propose that this intramolecular interaction is a common feature among MAGUK proteins.


Assuntos
Domínio Catalítico , Proteínas do Tecido Nervoso/química , Proteínas do Tecido Nervoso/metabolismo , Núcleosídeo-Fosfato Quinase/química , Núcleosídeo-Fosfato Quinase/metabolismo , Domínios de Homologia de src , Sequência de Aminoácidos , Animais , Apoenzimas/química , Apoenzimas/metabolismo , Sítios de Ligação , Cristalografia por Raios X , Proteína 4 Homóloga a Disks-Large , Guanosina Monofosfato/metabolismo , Guanilato Quinases , Peptídeos e Proteínas de Sinalização Intracelular , Proteínas de Membrana , Modelos Moleculares , Dados de Sequência Molecular , Ligação Proteica , Estrutura Quaternária de Proteína , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Ratos , Alinhamento de Sequência , Eletricidade Estática , Relação Estrutura-Atividade
4.
Acta Crystallogr D Biol Crystallogr ; 54(Pt 5): 817-21, 1998 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-9757095

RESUMO

The symmetry elements detected by the self-rotation and the Patterson functions, associated to strong correlations between the positions of the molecules in the asymmetric unit, are used to reduce the effective number of independent bodies to be located by the molecular replacement method. A distinction is made between 'frustrated' crystallographic symmetries, i.e. those that are almost crystallographic ones, and 'standard' non-crystallographic symmetries, which are taken into account by specific techniques. These have been successfully applied to many-body macromolecular crystal structures, with important savings in time and computational effort.


Assuntos
Cristalografia por Raios X , Modelos Moleculares , Estrutura Molecular , Bacillus/química , Proteínas de Bactérias/química , Cristalização , Inibidores Enzimáticos/química , Fragmentos Fab das Imunoglobulinas/química , Matemática , Conformação Proteica , Rotação
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