Metabarcoding of ichthyoplankton communities associated with a highly dynamic shelf region of the southwest Indian Ocean.

Drifting fish eggs and larvae (ichthyoplankton) can be identified to species using DNA metabarcoding, thus allowing for post hoc community analyses at a high taxonomic resolution. We undertook a regional-scale study of ichthyoplankton distribution along the east coast of South Africa, focused on the contrasting environments of the tropical Delagoa and subtropical Natal Ecoregions, and on exposed and sheltered shelf areas. Zooplankton samples were collected with tow nets at discrete stations along cross-shelf transects (20-200 m depth) spaced along a latitudinal gradient that incorporates a known biogeographical boundary. Metabarcoding detected 67 fish species, of which 64 matched prior distribution records of fishes from South Africa, with the remaining three known from the Western Indian Ocean. Coastal, neritic and oceanic species were present, from epi- and mesopelagic to benthopelagic and benthic adult habitats. By family, Myctophidae (10 species), Carangidae, Clupeidae, Labridae (each with 4 species) and Haemulidae (3 species) were most speciose. Ichthyoplankton community composition varied significantly with latitude, distance to coast, and distance to the shelf edge. Small pelagic fishes had the highest frequency of occurrence: Engraulis capensis, Emmelichthys nitidus and Benthosema pterotum increased in frequency towards the north, whereas Etrumeus whiteheadi increased towards the south. Chub mackerel Scomber japonicus accounted for most variability related to distance from the coast, whilst African scad Trachurus delagoa correlated with distance to the shelf edge. Dissimilarity between communities in the Delagoa and Natal Ecoregions was 98-100%, whereas neighbouring transects located within the sheltered KwaZulu-Natal Bight had lower dissimilarity (56-86%). Onshore transport of ichthyoplankton by Agulhas Current intrusions plausibly explained the abundance of mesopelagic species over the shelf. Metabarcoding followed by community analysis revealed a latitudinal gradient in the ichthyoplankton, associations with coastal and shelf-edge processes, and evidence of a spawning area in the sheltered KwaZulu-Natal Bight.

Accumulation of commonly used agricultural herbicides in coral reef organisms from iSimangaliso Wetland Park, South Africa.

Coral reefs are amongst the most biodiverse ecosystems on earth, but are significantly impacted by agricultural runoff. Despite herbicides being commonly detected in coastal waters, the possibility of herbicide accumulation in coral reef species has largely been overlooked. We investigate the accumulation of several herbicides in five species of coral reef invertebrates collected from ten sites along the Maputaland coast, South Africa. Multiple herbicide residues were detected in 95% of the samples, with total average concentrations across sites ranging between 25.2 ng g-1 to 51.3 ng g-1 dw. Acetochlor, alachlor and hexazinone were the predominant herbicides detected at all sites, with atrazine and simazine detected less frequently. Significant interactive effects were detected between sites nested in reef complex crossed with species, based on multiple and total herbicide concentrations. In general, multivariate herbicide concentrations varied significantly between species within and across most sites. Contrastingly, the concentrations of the different herbicides and that of total herbicide did not differ between conspecifics at most sites nested in their respective reef complexes. On average, highest total herbicide concentrations were measured in soft coral (Sarcophyton glaucum; 90.4 ± 60 ng g-1 and Sinularia gravis; 42.7 ± 25 ng g-1) and sponge (Theonela swinhoei; 39.0 ± 40 ng g-1) species, while significantly lower concentrations were detected in hard corals (Echinopora hirsutissima; 10.5 ± 5.9 ng g-1 and Acropora austera; 5.20 ± 4.5 ng g-1) at most sites. Agricultural runoff entering the ocean via the uMfolozi-St Lucia Estuary and Maputo Bay are likely sources of herbicide contamination to coral reefs in the region. There is an urgent need to assess the long-term effects of herbicide exposure on coral reef communities.

Accumulation of organochlorine pesticides in reef organisms from marginal coral reefs in South Africa and links with coastal groundwater.

Coral reefs support rich levels of biodiversity, but are globally threatened by a multitude of factors, including land-sourced pollutants. Concentrations of organochlorine pesticides (OCPs) in three species of coral reef invertebrate at five sites along the Maputaland coast, South Africa were quantified. We aimed to assess spatial and interspecies variations in pesticide accumulation. Markedly high levels of a range of OCP residues were detected within tissues, with total concentrations (ng g-1 ww) ranging from 460 to 1200 (Sarcophyton glaucum), 1100-3000 (Sinularia gravis) and 450-1500 (Theonella swinhoei), respectively. A decreasing gradient in total pesticide concentrations was detected southward from Regal Reef, opposite Lake Sibaya, the hypothesised source of the pollutants. Observed gradients in pesticide concentrations and nitrogen isotope signatures indicated coastal groundwater to be the likely source of the pollutants. Further studies are required to assess the potential ecotoxicological impacts of these contaminants at the organismal and ecosystem level.

What can South African reefs tell us about the future of high-latitude coral systems?

Coral communities are found at high latitude on the East Coast subtropical reefs of South Africa. They are biodiverse, economically important, and afforded World Heritage Site status in the iSimangaliso Wetland Park where some are subjected to recreational use. While the Park's unique coral reefs have, to date, suffered little bleaching from climate change, they are susceptible to the phenomenon and provide a natural laboratory for the study of its effects at high latitude. This review covers recent advances in the regional oceanography; coral community dynamics and the underpinning reef processes, including minor bleaching events; the incidence of coral disease; and coral genetic connectivity. The effects of human activity (SCUBA diving, recreational fishing, pesticide use) were assessed, as well as the nursery benefits of Acropora austera, a coral which provides the reefs with much structure and is vulnerable to damage and climate change. The reefs were valued in terms of human use as well as services such as sediment generation and retention. The results have provided valuable information on relatively pristine, high-latitude reefs, their socio-economic benefits, and the anticipated effects of climate change.

Drivers of Soft and Stony Coral Community Distribution on the High-Latitude Coral Reefs of South Africa.

The role of abiotic parameters in determining the distribution of coral communities was assessed on the relatively pristine Maputaland reefs of South Africa from comprehensive reef survey data. The reefs, on which 42 communities could be defined, occur within three geographically separate complexes. Patterns in benthic distribution could be partially explained by latitude and depth, in particular, with slope, turbulence and reef aspect playing far less role in that order. A few species were associated exclusively or in high abundance with some of the communities; in most, it was the ratio of otherwise cosmopolitan species within all of the reef complexes that distinguished them. Complex biotic variables were also considered but not quantified and it is likely that low genetic connectivity and high levels of self-seeding result in a measure of isolation of the communities within a latitudinal gradient.