Molecular Detection of Hemoplasma in animals in Tamil Nadu, India and Hemoplasma genome analysis.

Hemoplasma are small pleomorphic wall-less Gram-positive bacteria that infect erythrocytes of various mammalian hosts. They generally cause asymptomatic or chronic anaemia but occasionally causes overt life-threatening hemolytic anaemia. In the present study, 316 cattle, 115 sheep, 61 goats and 6 buffalo blood samples were collected from various villages or organized farms located in nine districts of Tamil Nadu to detect the hemoplasma by PCR. Overall prevalence of 43.04%, 65.22%, and 44.26% hemoplasma DNA was observed in cattle, sheep and goats, respectively. In total, 21 hemoplasma positive samples were sequenced for 16S rRNA gene which revealed 8 Mycoplasma wenyonii, 11 'Candidatus Mycoplasma haemobos' and one Mycoplasma ovis infection. Sheep blood samples from Chennai district were infected with 'Ca. M. haemobos' whereas sheep sample from Thiruvannamalai district was infected with M. wenyonii. At least 50% genes in the hemoplasma genomes were paralogous genes whose functions were not known. Only 'Ca. M. haemolamae' genome contained one primitive CRISPR system without any cas genes. Antimicrobial resistance genes (ARG) could not be identified in any of the hemoplasma genomes but homologous ARG were identified in all the genomes. Adhesion related gene EF-Tu was detected in all 14 hemoplasma genomes but enolase gene was detected only in 'Ca. M. haemohominis' SWG34-3 genome. This is the first report on the prevalence of hemoplasma infection in cattle, sheep and goat in India.

Genetic and non-genetic factors affecting conception rate of frozen semen in small holder dairy farmer system of rural India.

Fertility traits are as important as production traits in crossbred bovine population. Assessment of the fertility of bull in any frozen semen production program and evaluation of the conception rate under actual field conditions provide valuable information. The objective of this retrospective study was to estimate the effect of genetic and non-genetic influence on conception rate of frozen semen bulls maintained at Bharatiya Agro-Industries Foundation (BAIF) Pune based on the conception rate in cattle population of small holder dairy farmer system. The data comprising of 1,08,238 insemination records pertaining to 83 Holstein Friesian pure and crossbred bulls available at BAIF Pune were used to analyze conception rate. The fixed effect solutions and covariance components were estimated by linear mixed model using the restricted maximum likelihood method in WOMBAT software. The genetic correlations were estimated using bivariate analysis between post thaw motility and conception rate. The study was based on fertility related information from cows maintained in different villages of India and thus reflects the actual fertility of frozen semen used. The study was suggestive of influence of very small fraction of genetic effect and higher impact of management effect on conception rate. Fertility-related information available from this study is an invaluable asset in decision making process of breeding policies.

Semen production and semen quality of indigenous buffalo breeds under hot semiarid climatic conditions in India.

Semen data comprising of 97,023 ejaculates of 197 bulls from 6 buffalo breeds were analyzed. The traits considered were as follows: ejaculate volume, sperm concentration, mass activity, initial and post-thaw motility, total sperm, and total motile sperm before and after thawing as well as a composite trait equal to the theoretical number of doses which can be produced from each given ejaculate. The objective was to measure the semen production potential of indigenous buffalo bulls and identify factors affecting these traits. A linear mixed model was used, including a random bull effect along with other fixed factors: the order of the ejaculate on a particular day, the interval between collections, the time of collection, the breed, the age at collection, the semen collector, and the year and month of collection. The study showed breed wise variation for all traits. The first ejaculate of a bull on a particular day was superior to the second for nearly all the traits. Longer collection intervals are better than shorter intervals for all the parameters, although short collection interval of 2 to 4 days produced higher yield in terms of total semen doses without hampering semen quality. The study also showed a slight decrease of semen quality with time of collection within a day. The Murrah breed showed comparatively consistent performance during their whole life compared with the other breeds. Repeatability estimates for semen traits were found to be low (0.09 for mass activity) to relatively large (> 0.4 for volume and concentration). A negative correlation was found between bull effects for semen volume and concentration while a high positive correlation was found between mass activity, initial motility, and post-thaw motility. Results of the study will help in suggesting suitable management and breeding plans for semen production traits.