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2.
Nat Commun ; 13(1): 5160, 2022 09 02.
Artigo em Inglês | MEDLINE | ID: mdl-36056000

RESUMO

In the deep ocean symbioses between microbes and invertebrates are emerging as key drivers of ecosystem health and services. We present a large-scale analysis of microbial diversity in deep-sea sponges (Porifera) from scales of sponge individuals to ocean basins, covering 52 locations, 1077 host individuals translating into 169 sponge species (including understudied glass sponges), and 469 reference samples, collected anew during 21 ship-based expeditions. We demonstrate the impacts of the sponge microbial abundance status, geographic distance, sponge phylogeny, and the physical-biogeochemical environment as drivers of microbiome composition, in descending order of relevance. Our study further discloses that fundamental concepts of sponge microbiology apply robustly to sponges from the deep-sea across distances of >10,000 km. Deep-sea sponge microbiomes are less complex, yet more heterogeneous, than their shallow-water counterparts. Our analysis underscores the uniqueness of each deep-sea sponge ground based on which we provide critical knowledge for conservation of these vulnerable ecosystems.


Assuntos
Microbiota , Poríferos , Animais , Biodiversidade , Filogenia , Simbiose
3.
Front Zool ; 18(1): 44, 2021 Sep 16.
Artigo em Inglês | MEDLINE | ID: mdl-34530856

RESUMO

BACKGROUND: Many annelids, including well-studied species such as Platynereis, show similar structured segments along their body axis (homonomous segmentation). However, numerous annelid species diverge from this pattern and exhibit specialised segments or body regions (heteronomous segmentation). Recent phylogenomic studies and paleontological findings suggest that a heteronomous body architecture may represent an ancestral condition in Annelida. To better understand the segmentation within heteronomous species we describe the myogenesis and mesodermal delineation of segments in Siboglinum fiordicum during development. RESULTS: Employing confocal and transmission electron microscopy we show that the somatic longitudinal musculature consists of four separate strands, among which ventrolateral one is the most prominent and is proposed to drive the search movements of the head of the late metatrochophore. The somatic circular musculature lies inside the longitudinal musculature and is predominantly developed at the anterior end of the competent larva to support the burrowing behaviour. Our application of transmission electron microscopy allows us to describe the developmental order of the non-muscular septa. The first septum to form is supported by thick bundles of longitudinal muscles and separates the body into an anterior and a posterior region. The second group of septa to develop further divides the posterior body region (opisthosoma) and is supported by developing circular muscles. At the late larval stage, a septum reinforced by circular muscles divides the anterior body region into a forepart and a trunk segment. The remaining septa and their circular muscles form one by one at the very posterior end of the opisthosoma. CONCLUSIONS: The heteronomous Siboglinum lacks the strict anterior to posterior sequence of segment formation as it is found in the most studied annelid species. Instead, the first septum divides the body into two body regions before segments are laid down in first the posterior opisthosoma and then in the anterior body, respectively. Similar patterns of segment formation are described for the heteronomous chaetopterid Chaetopterus variopedatus and serpulid Hydroides elegans and may represent an adaptation of these annelids to the settlement and transition to the sedentarian-tubiculous mode of life.

4.
Curr Biol ; 31(8): R368-R370, 2021 04 26.
Artigo em Inglês | MEDLINE | ID: mdl-33905688

RESUMO

In 2016, the research ice-breaker Polarstern surveyed the submerged peaks of the permanently ice-covered Langseth Ridge, a tectonic feature comprising the Karasik seamount and two deeper seamount peaks, abutting the Gakkel ultra-slow spreading ridge (87°N 62°E to 85.5°N 57.4°E)1. A towed marine camera sled and a hybrid remotely operated vehicle revealed these peaks to be covered by a dense demosponge community, at first glance reminiscent of North Atlantic Geodia grounds (sensu2). Sponges were observed on top of a thick layer of spicule mat (Figure 1 and Video S1), intermixed with underlying layers of empty siboglinid tubes and bivalve shells, a substrate covering almost the entire seafloor. We observed trails of densely interwoven spicules connected directly to the underside or lower flanks of sponge individuals (Figure 1), suggesting these trails are traces of motile sponges. This is the first time abundant sponge trails have been observed in situ and attributed to sponge mobility. Given the low primary production in this permanently ice-covered region, these trails may relate to feeding behavior and/or a strategy for dispersal of juveniles. Such trails may remain visible for long periods given the regionally low sedimentation rates.


Assuntos
Camada de Gelo , Locomoção , Poríferos/fisiologia , Animais , Regiões Árticas
5.
Sci Rep ; 10(1): 17515, 2020 10 15.
Artigo em Inglês | MEDLINE | ID: mdl-33060808

RESUMO

Deep-sea sponges create hotspots of biodiversity and biological activity in the otherwise barren deep-sea. However, it remains elusive how sponge hosts and their microbial symbionts acquire and process food in these food-limited environments. Therefore, we traced the processing (i.e. assimilation and respiration) of 13C- and 15N-enriched dissolved organic matter (DOM) and bacteria by three dominant North Atlantic deep-sea sponges: the high microbial abundance (HMA) demosponge Geodia barretti, the low microbial abundance (LMA) demosponge Hymedesmia paupertas, and the LMA hexactinellid Vazella pourtalesii. We also assessed the assimilation of both food sources into sponge- and bacteria-specific phospholipid-derived fatty acid (PLFA) biomarkers. All sponges were capable of assimilating DOM as well as bacteria. However, processing of the two food sources differed considerably between the tested species: the DOM assimilation-to-respiration efficiency was highest for the HMA sponge, yet uptake rates were 4-5 times lower compared to LMA sponges. In contrast, bacteria were assimilated most efficiently and at the highest rate by the hexactinellid compared to the demosponges. Our results indicate that phylogeny and functional traits (e.g., abundance of microbial symbionts, morphology) influence food preferences and diet composition of sponges, which further helps to understand their role as key ecosystem engineers of deep-sea habitats.


Assuntos
Bactérias/metabolismo , Biodiversidade , Poríferos/metabolismo , Poríferos/microbiologia , Água do Mar/microbiologia , Simbiose , Animais , Bactérias/genética , Biomarcadores , Isótopos de Carbono , DNA Bacteriano , Ácidos Graxos/química , Microbiota , Isótopos de Nitrogênio , Material Particulado , Fosfolipídeos/química , Filogenia , Análise de Sequência de DNA
6.
Mol Biol Evol ; 37(12): 3485-3506, 2020 12 16.
Artigo em Inglês | MEDLINE | ID: mdl-32929503

RESUMO

All animals are capable of undergoing gametogenesis. The ability of forming haploid cells from diploid cells through meiosis and recombination appeared early in eukaryotes, whereas further gamete differentiation is mostly a metazoan signature. Morphologically, the gametogenic process presents many similarities across animal taxa, but little is known about its conservation at the molecular level. Porifera are the earliest divergent animals and therefore are an ideal phylum to understand evolution of the gametogenic toolkits. Although sponge gametogenesis is well known at the histological level, the molecular toolkits for gamete production are largely unknown. Our goal was to identify the genes and their expression levels which regulate oogenesis and spermatogenesis in five gonochoristic and oviparous species of the genus Geodia, using both RNAseq and proteomic analyses. In the early stages of both female and male gametogenesis, genes involved in germ cell fate and cell-renewal were upregulated. Then, molecular signals involved in retinoic acid pathway could trigger the meiotic processes. During later stages of oogenesis, female sponges expressed genes involved in cell growth, vitellogenesis, and extracellular matrix reassembly, which are conserved elements of oocyte maturation in Metazoa. Likewise, in spermatogenesis, genes regulating the whole meiotic cycle, chromatin compaction, and flagellum axoneme formation, that are common across Metazoa were overexpressed in the sponges. Finally, molecular signals possibly related to sperm capacitation were identified during late stages of spermatogenesis for the first time in Porifera. In conclusion, the activated molecular toolkit during gametogenesis in sponges was remarkably similar to that deployed during gametogenesis in vertebrates.


Assuntos
Evolução Biológica , Geodia/fisiologia , Oogênese , Espermatogênese , Animais , Feminino , Geodia/ultraestrutura , Masculino , Oócitos/crescimento & desenvolvimento , Oócitos/ultraestrutura , Proteoma , Espermatozoides/ultraestrutura , Transcriptoma
7.
PeerJ ; 8: e8703, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32292645

RESUMO

BACKGROUND: Lithistid demosponges, also known as rock sponges, are a polyphyletic group of sponges which are widely distributed. In the Northeast Atlantic (NEA), 17 species are known and the current knowledge on their distribution is mainly restricted to the Macaronesian islands. In the Mediterranean Sea, 14 species are recorded and generally found in marine caves. METHODS: Lithistids were sampled in nine NEA seamounts during the scientific expeditions Seamount 1 (1987) and Seamount 2 (1993) organized by the MNHN of Paris. Collected specimens were identified through the analyses of external and internal morphological characters using light and scanning electron microscopy, and compared with material from various museum collections as well as literature records. RESULTS: A total of 68 specimens were analysed and attributed to 17 species across two orders, seven families, and seven genera, representing new records of distribution. Ten of these species are new to science, viz. Neoschrammeniella inaequalis sp. nov., N. piserai sp. nov., N. pomponiae sp. nov., Discodermia arbor sp. nov., D. kellyae sp. nov., Macandrewia schusterae sp. nov., M. minima sp. nov., Exsuperantia levii sp. nov., Leiodermatium tuba sp. nov. and Siphonidium elongatus sp. nov., and are here described and illustrated. New bathymetric records were also found for D. ramifera, D. verrucosa and M. robusta. The Meteor seamount group has a higher species richness (15 species) compared to the Lusitanian seamount group (six species). The majority of the species had their distribution restricted to one seamount, and ten are only known from a single locality, but this can be a result of sample bias. DISCUSSION: The number of species shared between the seamounts and the Macaronesian islands is very reduced. The same pattern repeats between the NEA and Mediterranean Sea. This study demonstrates that NEA seamounts are ecosystems with a higher diversity of lithistids than previously thought, increasing the number of lithistids known to occur in the NEA and Mediterranean Sea from 26 to 36 species.

8.
Zootaxa ; 4615(2): zootaxa.4615.2.1, 2019 Jun 13.
Artigo em Inglês | MEDLINE | ID: mdl-31716341

RESUMO

A recent phylogenetic study revealed a close relationship between chiactine-bearing (family Achramorphidae, order Leucosolenida) and pugiole-bearing (order Baerida) calcaronean sponges as well as new putative taxa within Achramorphidae. In this study, we present a revision of chiactine-bearing sponges based on morphological re-examination of type material and recently collected specimens, in addition to new molecular data for the ribosomal 18S and C-region of the 28S. We provide re-descriptions for all known chiactine-bearing species, and further describe two new species from the Antarctic (Achramorpha antarctica sp. nov. and Megapogon schiaparellii sp. nov.) and two new species and a new genus from the Nordic Seas (Achramorpha ingolfi sp. nov. and Sarsinella karasikensis gen. nov. sp. nov.). The new phylogenetic reconstruction based on ribosomal 18S and C-region of the 28S confirms previous findings about the close relationship of some members of Baerida and the family Achramorphidae of the order Leucosolenida. However, new material and the addition of molecular data from the type species of both taxa would be required to formally propose changes at (sub-)ordinal levels within the classification of Calcaronean sponges.


Assuntos
Poríferos , Animais , Regiões Antárticas , Oceanos e Mares , Filogenia
9.
PLoS One ; 13(10): e0205505, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30356324

RESUMO

Emerald Basin on the Scotian Shelf off Nova Scotia, Canada, is home to a globally unique aggregation of the glass sponge Vazella pourtalesi, first documented in the region in 1889. In 2009, Fisheries and Oceans Canada (DFO) implemented two Sponge Conservation Areas to protect these sponge grounds from bottom fishing activities. Together, the two conservation areas encompass 259 km2. In order to ascertain the degree to which the sponge grounds remain unprotected, we modelled the presence probability and predicted range distribution of V. pourtalesi on the Scotian Shelf using random forest modelling on presence-absence records. With a high degree of accuracy the random forest model predicted the highest probability of occurrence of V. pourtalesi in the inner basins on the central Scotian Shelf, with lower probabilities at the shelf break and in the Fundian and Northeast Channels. Bottom temperature was the most important determinant of its distribution in the model. Although the two DFO Sponge Conservation Areas protect some of the more significant concentrations of V. pourtalesi, much of its predicted distribution remains unprotected (over 99%). Examination of the hydrographic conditions in Emerald Basin revealed that the V. pourtalesi sponge grounds are associated with a warmer and more saline water mass compared to the surrounding shelf. Reconstruction of historical bottom temperature and salinity in Emerald Basin revealed strong multi-decadal variability, with average bottom temperatures varying by 8°C. We show that this species has persisted in the face of this climatic variability, possibly indicating how it will respond to future climate change.


Assuntos
Distribuição Animal , Mudança Climática , Modelos Teóricos , Poríferos , Amônia/química , Animais , Conservação dos Recursos Naturais , Nitratos/química , Nova Escócia , Oceanos e Mares , Fosfatos/química , Probabilidade , Salinidade , Silicatos/química , Temperatura
10.
Zookeys ; (758): 137-156, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30150878

RESUMO

This new dataset presents occurrence data for Porifera collected in the Ross Sea, mainly in the Terra Nova Bay area, and curated at the Italian National Antarctic Museum (MNA, section of Genoa). Specimens were collected in 331 different sampling stations at depths ranging from 17 to 1,100 meters in the framework of 17 different Italian Antarctic expeditions funded by the Italian National Antarctic Research Program (PNRA). A total of 807 specimens, belonging to 144 morphospecies (i.e., 95 taxa identified at species level and 49 classified at least at the genus level) is included in the dataset. Nearly half (45%) of the species reported here correspond to species already known for Terra Nova Bay. Out of the remaining 55% previously unknown records, under a third (~29%) were classified at the species level, while over a quarter (~26%) were ascribed to the genus level only and these would require further study. All vouchers are permanently curated at the MNA and are available for study to the scientific community. A 3D model of an uncommon species from the Ross Sea, i.e. Tethyopsisbrondstedi (Burton, 1929), is also presented and will be made available for outreach purposes.

11.
Mar Pollut Bull ; 128: 483-495, 2018 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-29571400

RESUMO

Quantitative analyses of soft bottom invertebrate fauna from four Norwegian sill fjords show increased macrofaunal abundance, species richness, and a considerably changed benthic deep water macrofaunal composition in the inner parts of the fjord system. In retrospect, the analyses show significantly altered benthic macrofaunal community structure that was not reflected by the changes in the Shannon-Wiener diversity indices during regular monitoring. The observed changes are mainly due to an increased abundance of opportunistic species, especially of the polychaete Polydora sp. during the last 10-15 years which is correlated significantly to declining dissolved oxygen, rising temperature in the bottom water and increasing total organic matter in the sediment. Possible anthropogenic and climatic impact factors related to the observed macrofaunal changes and environmental consequences of the changes are discussed.


Assuntos
Monitoramento Ambiental/métodos , Sedimentos Geológicos/química , Atividades Humanas , Invertebrados/crescimento & desenvolvimento , Água do Mar/química , Poluição da Água/análise , Animais , Biodiversidade , Estuários , Humanos , Substâncias Húmicas/análise , Invertebrados/classificação , Noruega , Poliquetos/classificação , Poliquetos/crescimento & desenvolvimento , Dinâmica Populacional
12.
Z Naturforsch C J Biosci ; 72(7-8): 259-264, 2017 Jul 14.
Artigo em Inglês | MEDLINE | ID: mdl-28453442

RESUMO

A new isoquinoline quinone system and its iodinated derivatives were isolated from the ascidian tunicate Ascidia virginea Müller 1776 (Phlebobranchia: Ascidiidae). Structures were elucidated by spectroscopic methods and derivatization reactions. Ascidine A (3,7-dihydro-1,8-dihydroxy-4-(4'-hydroxyphenyl)isoquinoline-3,7-dione (1), ascidine B (3,7-dihydro-1,8-dihydroxy-4-(4'-hydroxy-3'-iodophenyl)isoquinoline-3,7-dione (2), and ascidine C (3,7-dihydro-1,8-dihydroxy-4-(4'-hydroxy-3',5'-diiodophenyl)isoquinoline-3,7-dione (3) represent a novel type of tyrosine-derived alkaloids.


Assuntos
Produtos Biológicos/química , Isoquinolinas/química , Quinonas/química , Urocordados/química , Animais , Produtos Biológicos/isolamento & purificação , Cromatografia Líquida de Alta Pressão , Isoquinolinas/isolamento & purificação , Espectroscopia de Ressonância Magnética , Espectrometria de Massas , Estrutura Molecular , Quinonas/isolamento & purificação , Espectrofotometria
13.
Mar Drugs ; 15(2)2017 Feb 22.
Artigo em Inglês | MEDLINE | ID: mdl-28241423

RESUMO

Twenty-eight sponge specimens were collected at a shallow water hydrothermal vent site north of Iceland. Extracts were prepared and tested in vitro for cytotoxic activity, and eight of them were shown to be cytotoxic. A mass spectrometry (MS)-based metabolomics approach was used to determine the chemical composition of the extracts. This analysis highlighted clear differences in the metabolomes of three sponge specimens, and all of them were identified as Haliclona (Rhizoniera) rosea (Bowerbank, 1866). Therefore, these specimens were selected for further investigation. Haliclona rosea metabolomes contained a class of potential key compounds, the 3-alkyl pyridine alkaloids (3-APA) responsible for the cytotoxic activity of the fractions. Several 3-APA compounds were tentatively identified including haliclamines, cyclostellettamines, viscosalines and viscosamines. Among these compounds, cyclostellettamine P was tentatively identified for the first time by using ion mobility MS in time-aligned parallel (TAP) fragmentation mode. In this work, we show the potential of applying metabolomics strategies and in particular the utility of coupling ion mobility with MS for the molecular characterization of sponge specimens.


Assuntos
Alcaloides/toxicidade , Fontes Hidrotermais/química , Metaboloma/efeitos dos fármacos , Poríferos/efeitos dos fármacos , Poríferos/metabolismo , Piridinas/toxicidade , Alcaloides/química , Animais , Haliclona/química , Haliclona/metabolismo , Islândia , Metabolômica/métodos , Piridinas/química , Piridinas/metabolismo , Compostos de Piridínio/química , Compostos de Piridínio/metabolismo , Água/química
14.
Microb Ecol ; 73(3): 668-676, 2017 04.
Artigo em Inglês | MEDLINE | ID: mdl-27664049

RESUMO

During the last decades, our knowledge about the activity of sponge-associated microorganisms and their contribution to biogeochemical cycling has gradually increased. Functional groups involved in carbon and nitrogen metabolism are well documented, whereas knowledge about microorganisms involved in the sulfur cycle is still limited. Both sulfate reduction and sulfide oxidation has been detected in the cold water sponge Geodia barretti from Korsfjord in Norway, and with specimens from this site, the present study aims to identify extant versus active sponge-associated microbiota with focus on sulfur metabolism. Comparative analysis of small subunit ribosomal RNA (16S rRNA) gene (DNA) and transcript (complementary DNA (cDNA)) libraries revealed profound differences. The transcript library was predominated by Chloroflexi despite their low abundance in the gene library. An opposite result was found for Acidobacteria. Proteobacteria were detected in both libraries with representatives of the Alpha- and Gammaproteobacteria related to clades with presumably thiotrophic bacteria from sponges and other marine invertebrates. Sequences that clustered with sponge-associated Deltaproteobacteria were remotely related to cultivated sulfate-reducing bacteria. The microbes involved in sulfur cycling were identified by the functional gene aprA (adenosine-5'-phosphosulfate reductase) and its transcript. Of the aprA sequences (DNA and cDNA), 87 % affiliated with sulfur-oxidizing bacteria. They clustered with Alphaproteobacteria and with clades of deep-branching Gammaproteobacteria. The remaining sequences clustered with sulfate-reducing Archaea of the phylum Euryarchaeota. These results indicate an active role of yet uncharacterized Bacteria and Archaea in the sponge's sulfur cycle.


Assuntos
Poríferos/microbiologia , Água do Mar/microbiologia , Enxofre/metabolismo , Acidobacteria/genética , Acidobacteria/isolamento & purificação , Acidobacteria/metabolismo , Alphaproteobacteria/genética , Alphaproteobacteria/isolamento & purificação , Alphaproteobacteria/metabolismo , Animais , Biodiversidade , Chloroflexi/genética , Chloroflexi/isolamento & purificação , Chloroflexi/metabolismo , DNA Bacteriano/genética , Deltaproteobacteria/genética , Deltaproteobacteria/isolamento & purificação , Deltaproteobacteria/metabolismo , Euryarchaeota/genética , Euryarchaeota/isolamento & purificação , Euryarchaeota/metabolismo , Gammaproteobacteria/genética , Gammaproteobacteria/isolamento & purificação , Gammaproteobacteria/metabolismo , RNA Ribossômico 16S/genética
15.
Zootaxa ; 4175(6): 521-538, 2016 Oct 18.
Artigo em Inglês | MEDLINE | ID: mdl-27811738

RESUMO

The carnivorous sponge family Cladorhizidae has been subject to several recent studies, yet the cladorhizid fauna of the Caribbean and adjacent areas remain comparatively poorly known. In this article we provide a description of the novel species Abyssocladia polycephalus sp. nov. from the Muir Seamount NE of Bermuda, belonging to the mainly Pacific genus Abyssocladia, and Asbestopluma (Asbestopluma) caribica sp. nov. from the Beata Ridge. Additionally, we provide a re-description of the poorly known species Chondrocladia (Chondrocladia) verticillata Topsent, 1920, and compare this species with the closely related species C. (C.) concrescens Schmidt, 1880. Finally, we provide a brief overview of the carnivorous sponges known from the Gulf of Mexico, Caribbean Sea and adjacent Atlantic Ocean.


Assuntos
Poríferos/anatomia & histologia , Poríferos/classificação , Animais , Oceano Atlântico , Região do Caribe , Especificidade da Espécie
16.
Mol Phylogenet Evol ; 94(Pt A): 327-45, 2016 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-26416707

RESUMO

Carnivorous sponges are characterized by their unique method of capturing mesoplanktonic prey coupled with the complete or partial reduction of the aquiferous system characteristic of the phylum Porifera. Current systematics place the vast majority of carnivorous sponges within Cladorhizidae, with certain species assigned to Guitarridae and Esperiopsidae. Morphological characters have not been able to show whether this classification is evolutionary accurate, and whether carnivory has evolved once or in several lineages. In the present paper we present the first comprehensive molecular phylogeny of the carnivorous sponges, interpret these results in conjunction with morphological characters, and propose a revised classification of the group. Molecular phylogenies were inferred using 18S rDNA and a combined dataset of partial 28S rDNA, COI and ALG11 sequences. The results recovered carnivorous sponges as a clade closely related to the families Mycalidae and Guitarridae, showing family Cladorhizidae to be monophyletic and also including carnivorous species currently placed in other families. The genus Lycopodina is resurrected for species currently placed in the paraphyletic subgenus Asbestopluma (Asbestopluma) featuring forceps spicules and lacking sigmas or sigmancistras. The genera Chondrocladia and Cladorhiza are found to be monophyletic. However, results indicate that the subgenus Chondrocladia is polyphyletic with respect to the subgenera Meliiderma and Symmetrocladia. Euchelipluma, formerly Guitarridae, is retained, but transferred to Cladorhizidae. The four known carnivorous species currently in Esperiopsis are transferred to Abyssocladia. Neocladia is a junior homonym and is here renamed Koltunicladia. Our results provide strong evidence in support of the hypothesis that carnivory in sponges has evolved only once. While spicule characters mostly reflect monophyletic groups at the generic level, differences between genera represent evolution within family Cladorhizidae rather than evolution of carnivory in separate lineages. Conflicting spicule characters can be reinterpreted to support the inclusion of all carnivorous sponges within Cladorhizidae, and a carnivorous habit should thus be considered the main diagnostic character in systematic classification.


Assuntos
Carnivoridade , Poríferos/fisiologia , Animais , Evolução Biológica , DNA Ribossômico/genética , Complexo IV da Cadeia de Transporte de Elétrons/genética , Filogenia , Poríferos/classificação , Poríferos/genética , Comportamento Predatório , RNA Ribossômico 18S/genética , RNA Ribossômico 28S/genética
17.
Front Microbiol ; 6: 1510, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26779165

RESUMO

In order to fully understand the cycling of elements in hydrothermal systems it is critical to understand intra-field variations in geochemical and microbiological processes in both focused, high-temperature and diffuse, low-temperature areas. To reveal important causes and effects of this variation, we performed an extensive chemical and microbiological characterization of a low-temperature venting area in the Loki's Castle Vent Field (LCVF). This area, located at the flank of the large sulfide mound, is characterized by numerous chimney-like barite (BaSO4) structures (≤ 1 m high) covered with white cotton-like microbial mats. Results from geochemical analyses, microscopy (FISH, SEM), 16S rRNA gene amplicon-sequencing and metatranscriptomics were compared to results from previous analyses of biofilms growing on black smoker chimneys at LCVF. Based on our results, we constructed a conceptual model involving the geochemistry and microbiology in the LCVF. The model suggests that CH4 and H2S are important electron donors for microorganisms in both high-temperature and low-temperature areas, whereas the utilization of H2 seems restricted to high-temperature areas. This further implies that sub-seafloor processes can affect energy-landscapes, elemental cycling, and the metabolic activity of primary producers on the seafloor. In the cotton-like microbial mats on top of the active barite chimneys, a unique network of single cells of Epsilonproteobacteria interconnected by threads of extracellular polymeric substances (EPS) was seen, differing significantly from the long filamentous Sulfurovum filaments observed in biofilms on the black smokers. This network also induced nucleation of barite crystals and is suggested to play an essential role in the formation of the microbial mats and the chimneys. Furthermore, it illustrates variations in how different genera of Epsilonproteobacteria colonize and position cells in different vent fluid mixing zones within a vent field. This may be related to niche-specific physical characteristics. Altogether, the model provides a reference for future studies and illustrates the importance of systematic comparative studies of spatially closely connected niches in order to fully understand the geomicrobiology of hydrothermal systems.

18.
Nat Commun ; 5: 3905, 2014 May 20.
Artigo em Inglês | MEDLINE | ID: mdl-24844197

RESUMO

Elucidation of macroevolutionary transitions between diverse animal body plans remains a major challenge in evolutionary biology. We address the sponge-eumetazoan transition by analyzing expression of a broad range of eumetazoan developmental regulatory genes in Sycon ciliatum (Calcispongiae). Here we show that many members of surprisingly numerous Wnt and Tgfß gene families are expressed higher or uniquely in the adult apical end and the larval posterior end. Genes involved in formation of the eumetazoan endomesoderm, such as ß-catenin, Brachyury and Gata, as well as germline markers Vasa and Pl10, are expressed during formation and maintenance of choanoderm, the feeding epithelium of sponges. Similarity in developmental gene expression between sponges and eumetazoans, especially cnidarians, is consistent with Haeckel's view that body plans of sponges and cnidarians are homologous. These results provide a framework for further studies aimed at deciphering ancestral developmental regulatory networks and their modifications during animal body plans evolution.


Assuntos
Padronização Corporal/genética , Cnidários/genética , Regulação da Expressão Gênica no Desenvolvimento/genética , Poríferos/genética , Animais , Sequência de Bases , Proteínas Fetais/genética , Fatores de Transcrição GATA/genética , Dados de Sequência Molecular , Proteínas com Domínio T/genética , Fator de Crescimento Transformador beta/genética , Proteínas Wnt/genética , beta Catenina/genética
19.
Mol Ecol ; 23(15): 3877-89, 2014 08.
Artigo em Inglês | MEDLINE | ID: mdl-24172025

RESUMO

The use of DNA as a marker for prey inside the gut of predators has been instrumental in further understanding of known and unknown interactions. Molecular approaches are in particular useful in unavailable environments like the deep sea. Trophic interactions in the deep sea are difficult to observe in situ, correct deep-sea experimental laboratory conditions are difficult to obtain, animals rarely survive the sampling, or the study organisms feed during the sampling due to long hauls. Preliminary studies of vent and seep systems in the Nordic Seas have identified the temperate-cold-water pelagic amphipod Themisto abyssorum as a potentially important predator in these chemosynthetic habitats. However, the prey of this deep-sea predator is poorly known, and we applied denaturing high performance liquid chromatography (DHPLC) to investigate the predator-prey interactions of T. abyssorum in deep-water vent and seep systems. Two deep-water hydrothermally active localities (The Jan Mayen and Loki's Castle vent fields) and one cold seep locality (The Håkon Mosby mud volcano) in the Nordic Seas were sampled, genomic DNA of the stomachs of T. abyssorum was extracted, and 18S rDNA gene was amplified and used to map the stomach content. We found a wide range of organisms including micro-eukaryotes, metazoans and detritus. Themisto abyssorum specimens from Loki's Castle had the highest diversity of prey. The wide range of prey items found suggests that T. abyssorum might be involved in more than one trophic level and should be regarded as an omnivore and not a strict carnivore as have previously been suggested.


Assuntos
Anfípodes/fisiologia , Cadeia Alimentar , Fontes Hidrotermais , Animais , Regiões Árticas , Cromatografia Líquida de Alta Pressão , DNA/análise , Conteúdo Gastrointestinal , Dados de Sequência Molecular , Reação em Cadeia da Polimerase , Comportamento Predatório , RNA Ribossômico 18S/análise , Análise de Sequência de DNA
20.
Integr Comp Biol ; 53(3): 447-61, 2013 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-23704365

RESUMO

Most biological groups are still longing for a phylogenetically sound taxonomic organization. In this article, we aimed to verify the consistency of morphological characters in calcarean sponges of the well-known non-monophyletic order Clathrinida using a molecular phylogeny. For this we included 50 species, including six type species, currently assigned to eight different genera. A maximum likelihood topology was generated for the nuclear ITS marker using the General Time Reversible model and the bootstrap reliability test. Our topology indicated 10 clathrinid clades that included species with consistent morphological characters. In the present study, we defined nine of these clades as clathrinid genera, including four newly described and two newly diagnosed genera. Recent studies have indicated that not much phylogenetic information may be found in morphology, but our findings contradict this general assertion. Our study confirms the suitability of skeleton and body anastomosis as valid characters in a phylogenetically sound taxonomy for the order. Interestingly, we have also found that, apart from the Calcinea/Calcaronea split and a few minor details, Haeckel's original proposal is remarkably similar to our own, which was based on a molecular phylogeny 140 years later.


Assuntos
Filogenia , Poríferos/anatomia & histologia , Poríferos/classificação , Poríferos/genética , Animais , Sequência de Bases , Primers do DNA/genética , Funções Verossimilhança , Modelos Genéticos , Dados de Sequência Molecular , Alinhamento de Sequência , Análise de Sequência de DNA , Especificidade da Espécie
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