Phenotypic variation in Heremites vittatus (Olivier, 1804) (Sauria: Scincidae) from Iran and Turkey.

According to a large morphological dataset of specimens from Turkey to Iran and based on several morphological analyses, the Iranian populations of the skink Heremites vittatus are separated from other populations of this taxon in Turkey. The values of most of morphological characters were higher in the Turkish populations. Morphological variation among populations of H. vittatus (Olivier, 1804) from Turkey and the western slopes of the Zagros Mountains in Kermanshah province in Iran may be the result of different dispersal and vicariance events. Comparison the current study dataset with specimens from Egypt can definite the taxonomic status of Iranian and Turkish populations.

A new species of the genus Eirenis Jan, 1863 (Squamata: Colubridae) from Kerman Province in South-central Iran.

A new species of Dwarf Snakes, Eirenis rafsanjanicus sp. n., is described from south-central Iran. This species is well distinguished from other congeners in both molecular and morphological characters, and its description increases the number of described Eirenis species to 26. Eirenis rafsanjanicus sp. n. is genetically closest (6% in Cytb) to the recently described E. yassujicus, which inhabits high habitats in southern Iran. Morphologically, E. rafsanjanicus sp. n. is more similar to E. modestus than to other congeners. A revised key to the genus is presented.

An overview on the nomenclatural and phylogenetic problems of native Asian brine shrimps of the genus Artemia Leach, 1819 (Crustacea, Anostraca).

The genus Artemia Leach, 1819 is a cosmopolitan halophilic crustacean, consisting of bisexual species and obligate parthenogenetic populations. Asia is rich in Artemia biodiversity. More than 530 Artemia sites have been recorded from this area and more than 20 species/subspecies/variety names have been used for them. There exist various problems in the nomenclature, identification, and phylogenetic status of Artemia native to Asia, which are discussed in this paper.

A new species of Eryx (Serpentes: Erycidae) from Iran.

We describe a new species of the genus Eryx Daudin, 1803 from southern Iran that is morphologically closely related to the Indian sand boa, E. johnii. The new species, Eryx sistanensis sp. nov. has a distribution range from Zabol in the Sistan Region to the southern parts of Sistan Baluchistan, as well as Hormozgan Province of Iran. Morphologically, E. sistanensis sp. nov. differs from E. johnii by having fewer dorsal scale rows at midbody and the tail tip is not as blunt as E. johnii. The genetic distance (p-distance) between the new species and the Indian sand boa is considerable (9.1% for cytb and 11.8% for COI).

Molecular phylogeny and intraspecific differentiation of the Trapelus agilis species complex in Iran (Squamata: Agamidae) inferred from mitochondrial DNA sequences.

BACKGROUND: Trapelus agilis consists of different morphotypes with restricted distributions in the Iranian Plateau. The phylogeny of the species complex has not been resolved so far, but recently Trapelus sanguinolentus were elevated from this complex into a full species. Other populations of the species complex need to be evaluated taxonomically. METHODS: In the present study, several populations of this species complex along with specimens of its closely related taxa in Iran, T. sanguinolentus, T. ruderatus and T. persicus, were examined using partial nucleotide sequences of two mitochondrial genes (cytb and ND2) (total length 1,322 bp). RESULT: Populations of T. sanguinolentus clustered within the T. agilis species complex, thus indicating its paraphyly, but T. sanguinolentus was previously determined to be a species based on morphological features. The T. agilis species complex forms two distinct major clades, each of which is represented by several local populations on the Iranian Plateau. At least five distinct taxa can be identified within this traditional group. Our biogeographic evaluation of the molecular dataset suggested that the Trapelus complex originated in the Late Oligocene (30 mya) and subsequently diversified during the early to middle Miocene (22-13 mya). At first, the predominantly western clade of Trapelus ruderatus diverged from the other clades (22 mya). Afterward, Trapelus persicus diverged around 18 mya ago. The broader T. agilis complex started to diverge about 16 mya, forming several clades on the Iranian Plateau and in Central Asia. The different lineages within this species complex appear to be the result of vicariance events and dispersal waives. The corresponding vicariance events are the formation of the Zagros and Kopet Dagh basins (16-14 mya), and consequently, the aridification of the Iranian Plateau in the late Miocene (11-6 Mya).

A new species of the genus Microgecko Nikolsky, 1907 (Sauria: Gekkonidae) from the southern Zagros Mountains, Iran.

The dwarf geckos of the genus Microgecko Nikolsky, 1907 comprise five recognized species, ranging from western Iran to northwestern India. Iran harbors four species of the genus Microgecko. Until now, all populations of the genus Microgecko with a single pair of the postmental shields (as a key diagnostic character) were assigned to M. helenae. Here, based on significant differences in scalation characters, distinct coloration, and ecological peculiarities of habitat as well as support of our present molecular study we distinguish and describe a new species, Microgecko varaviensis sp. nov. within the M. helenae complex, from the southern regions of the Zagros Mountains in Fars Province, southern Iran. Detailed information and an updated identification key for the genus Microgecko are also presented.

First comprehensive report of bacteria spp. associated with cloaca of Laudakia nupta (Sauria: Agamidae) in Iran using molecular studies.

Iran bears a remarkable variety of reptiles. One of the lizard families occurring in Iran is the Family Agamidae which is widely are distributed throughout the old world. The large-scaled rock agamid, Laudakia nupta, is one of the well-known agamid. There are few reports of cloacal microbial on reptiles hence their function in cloacae remains unknown. Laudakia nupta usually live in rural and urban areas and close vicinity to man, they are likely to play an important role in the spread of disease that may be caused by these microorganisms and their transmission to man. Therefore, the aim of this study was to identify the bacterial flora colonizing the cloacal region of Laudakia nupta using molecular studies. The cloacal fluids were directly placed on nutrient agar (NA) plates and incubated at 25 ± 2 °C for 48 h. The resulting bacterial colonies were transferred to fresh nutrient agar (NA) plates for molecular studies. Twelve isolates were obtained from 17 specimens of Laudakia nupta. All bacteria isolates were identified as Bacillus subtillis (5), Bacillus cereus (4), Bacillus sp. (1), Pseudomonas putida (1), and Pseudomonas sp. (1) based on partial sequences of the 16 s rRNA gene. This is the first comprehensive report of bacteria spp. associated with cloaca of Laudakia nupta using molecular studies. In this research, we found that Laudakia nupta can be a carrier of bacteria which can transfer microorganisms to hosts.

The phylogenetic relationships and molecular systematics of scincid lizards of the genus Heremites (Sauria, Scincidae) in the Middle East based on mtDNA sequences.

The taxonomic status of species included in the genus Heremites in Iran and Iraq is uncertain. Three of these species have been assigned to the genus based on morphology: Heremites auratus transcaucasica, H. vittatus, and H. septemtaeniatus. We examined the phylogenetic relationships and taxonomic status of the Iranian and Iraqi species of Heremites by performing phylogenetic analyses using mitochondrial DNA sequences (cytochrome b and 16S rRNA). Phylogenetic relationships and estimated genetic distances indicated that the Heremites populations of the area (Iran and Iraq) form five distinct clades. Three of these clades are found only in Iran, specifically in: (1) Fars and Hormozgan provinces; (2) Northeastern Khuzestan; and (3) Khorasan and Isfahan provinces. The fourth clade (H. septemtaeniatus) is found in west and Mahshahr in Iran as well as in eastern and northern parts of Iraq. The fifth clade, Heremites vittatus, is found in Iran and Iraq. We also confirm the absence of H. auratus in Iran and Iraq. It also indicated that H. vittatus is sister taxon to the other groups that our analyses estimate the divergence of this clade in the Middle Miocene (15.9 Mya). The clade containing the Fars-Hormozgan and Khuzestan populations diverged at the end of the Miocene (8.5 Mya). The Isfahan and Khorasan populations separated at the Pliocene (4.2 Mya) from the western Iranian group, the group in Mahshahr, Iran and the groups in northern and eastern Iraq.

Nereididae (Annelida: Phyllodocida) of the Persian Gulf and Gulf of Oman, including description of two new species and 11 new records.

Currently, only 31 nereidid species are known from the Persian Gulf and Gulf of Oman. The present study was carried out in order to investigate the poorly known diversity of nereidid polychaetes from seas of the southern coasts of Iran. Specimens were collected from 23 locations along the intertidal zones of the two water bodies. Among the 26 species found: two are new, and are described here, including Simplisetia qeshmensis sp. nov. and Neanthes biparagnatha sp. nov.; 11 are new geographical records. Neanthes biparagnatha sp. nov. is most similar to N. deplanata (Mohammed, 1971), which is also found in the Persian Gulf, but can be most easily distinguished from it by the presence of bars in addition to cones in Area IV of the pharynx. Simplisetia qeshmensis sp. nov. may be distinguished from its closest congener, S. erythraeensis (Fauvel, 1918), also reported from the Persian Gulf, by having a greater number of paragnaths in Area I of the pharynx, an additional type of chaeta (homogomph spinigers) in the ventral neuropodial fascicle and having a reduced notopodial lobe in posterior chaetigers. The list of new records includes: one species from both areas, Neanthes glandicincta (Southern, 1921); eight species from the Persian Gulf, Leonnates decipiens Fauvel, 1929, Neanthes acuminata (Ehlers, 1868), Neanthes sp., Neanthes sp. cf. N. acuminata, Nereis sp. cf. N. pelagica Linnaeus, 1758, Perinereis cultrifera (Grube, 1840) species complex., Pseudonereis trimaculata (Horst, 1924), Pseudonereis sp. cf. P. variegata (Grube, 1857) and two from the Gulf of Oman, Leonnates persicus Wesenberg-Lund, 1949 and Perinereis kuwaitensis Mohammed, 1970. The present study brings to 40 the number of nereidid species currently known from the Persian Gulf and Gulf of Oman. A taxonomic key to nereidid species from the intertidal zones of the Persian Gulf and Gulf of Oman is presented to facilitate future investigations.

A revised key to the lizards of Iran (Reptilia: Squamata: Lacertilia).

During recent years several lizard taxa have been added to the faunal list of Iran. Descriptions and new records are scattered in different publications in the herpetological literature. We here present species accounts for 152 species belonging to 43 genera and 10 families up to July 2016. The most diverse family is Lacertidae with 9 genera, 49 species and 2 subspecies, followed by Gekkonidae with 13 genera and 43 species, Agamidae with 5 genera, 18 species and 4 subspecies, Scincidae with 7 genera, 18 species and 2 subspecies, Phyllodactylidae with 1 genus and 10 species, Sphaerodactylidae with 2 genera and 4 species, Varanidae with 1 genus, 3 species and 2 subspecies, Uromastycidae with 2 genera and 3 species, Eublepharidae with 1 genus and 3 species, and Anguidae with 2 genera and 2 species. The current paper provides a dichotomous key including all of the currently recognized lizards of Iran.

Resolving species delimitation within the genus Bunopus Blanford, 1874 (Squamata: Gekkonidae) in Iran using DNA barcoding approach.

Mitochondrial COI sequences were used to investigate species delimitation within the genus Bunopus in Iran. A dataset with a final sequence length of 633 nucleotides including 100 specimens from 31 geographically distant localities across Iran were generated. The result demonstrated that two major clades with strong support can be identified within the genus Bunopus in Iran. Clade A includes Bunopus crassicaudus and two new entities, eastern populations (subclade A2,1) and Shahdad populations (subclade A2,2). The second clade comprises western and southwestern populations (subclade B1,1), Arabian populations (subclade B1,2) and south and southeast populations in Iran, to which Bunopus tuberculatus (subclade B2) is assigned. In addition to Bunopus crassicaudus and B. tuberculatus, three new candidate species in Iran can easily be identified based on the DNA barcoding approach.

A new species of the genus Microgecko Nikolsky, 1907 (Sauria: Gekkonidae) from southern Iran.

The dwarf geckos of the recently revived genus Microgecko Nikolsky, 1907 comprise four species, ranging from western Iran to northwestern India. Iran hosts three species of the four recognized species of the genus Microgecko. Here, we describe a new species of this genus based on two and single specimens from southeastern and southern Iran, respectively. Combinations of scalation characters and distinct morphology, coloration and habitat peculiarities in calcareous mountains distinguish Microgecko chabaharensis sp. nov. from its congeners. Detailed information and an updated identification key for the genus Microgecko are also presented.

Dermatitis in the Fringe-Toed Lizard, Acanthodactylus nilsoni Rastegar-Pouyani, 1998 (Sauria: Lacertidae) Associated with Fusarium proliferatum.

From July to October 2013, nine out of 40 Acanthodactylus nilsoni collected from Western Iran, showed clinical signs of dermatitis in the dorsal and ventral surface of neck and fingers. Therefore, the aim of this survey was to identify the fungal flora colonizing the skin of A. nilsoni using morphological and molecular studies. Nine isolates of Fusarium were obtained from infected lizard samples and identified as Fusarium proliferatum through study of morphological characters. In the present study, selected F. proliferatum isolates (USMGFSC 230-112, USMGFSC 186-113, and USMGFSC 33-114) were examined and phylogenetically analysed on the basis of partial sequences of the tef1 and tub2 genes. Sequence analysis supported the morphological data, and all isolates were placed within F. proliferatum species. This is the first report on morphological and molecular identification of F. proliferatum isolated from lizards' dermatitis in Iran.

Molecular phylogeny and biogeography of the genus Acanthodactylus Fitzinger, 1834 (Reptilia: Lacertidae) in Iran, inferred from mtDNA Sequences.

Phylogenetic relationships of Iranian Acanthodactylus species were investigated using 1407 bp of mitochondrial DNA including 606 bp of cytochrome b and 801 bp of NADH dehydrogenase subunit 4 (ND4). Analyses done with maximum parsimony, maximum-likelihood, and Bayesian inference included 67 specimens from 27 geographically distinct localities in Iran. Our molecular results proposed three clear and geographically isolated clades by their phylogenetic positions and genetic differences. These three major clades are: (1) A. micropholis+ A. grandis+ A. khamirensis; (2) A. blanfordi+ A. schmidti+ Acanthodactylus sp1; (3) A. nilsoni+ A. boskianus + Acanthodactylus sp2. The phylogenetic analyses of the genus did not group A. grandis with the remaining species of the A. boskianus group and clustered it along with A. khamirensis within the A. micropholis group. In addition, phylogenetic results revealed a monophyletic status for A. schmidti and A. micropholis groups. Molecular clock approach indicated that the most recent divergence event splits A. micropholis from A. khamirensis about 2 MYA and results of dispersal-vicariance analyses showed that this diversification occurred by dispersal event rather than vicariance. Results of Reconstruct Ancestral State in Phylogenies (RASP) showed that Most Recent Common Ancestor (MRCA) of A. micropholis, A. blanfordi and A. sp1 originated in eastern Iran. The first diversification of the genus in Iran most likely occurred between 8.5-9 MYA corresponding with the hypothesis that the genus has entered Iran long after the complete uplifting of the Zagros Mts. (10-12 MYA) which limited its dispersal only to the Persian Gulf shores and western slopes of the Zagros Mts.

Molecular phylogeny and historical biogeography of the Anatolian lizard Apathya (Squamata, Lacertidae).

Apathya is a lacertid genus occurring mainly in south-east Turkey and its adjacent regions (part of Iran and Iraq). So far two morphological species have been attributed to the genus; A. cappadocica (with five subspecies, A. c.cappadocica, A. c.muhtari, A. c.schmidtlerorum, A. c. urmiana and A. c.wolteri) and A.yassujica. The first species occupies most of the genus' distribution range, while A. yassujica is endemic of the Zagros Mountains. Here, we explored Apathya's taxonomy and investigated the evolutionary history of the species by employing phylogenetic and phylogeographic approaches and using both mitochondrial (mtDNA) and nuclear markers. The phylogenetic relationships and the genetic distances retrieved, revealed that Apathya is a highly variable genus, which parallels its high morphological variation. Such levels of morphological and genetic differentiation often exceed those between species of other Lacertini genera that are already treated as full species, suggesting the necessity for a taxonomic revision of Apathya. The phylogeographical scenario emerging from the genetic data suggests that the present distribution of the genus was determined by a combination of dispersal and vicariance events between Anatolia and Southwest Asia dating back to the Miocene and continuing up to the Pleistocene. Key geological events for the understanding of the phylogeography of the genus are the movement of the Arabian plate that led to the configuration of Middle East (orogenesis of the mountain ranges of Turkey and Iran) and the formation of Anatolian Diagonal.