The trans Effect in Palladium Phosphine Sulfonate Complexes.

Palladium phosphine sulfonate complexes constitute an efficient family of catalysts for both homopolymerization of ethylene and copolymerization of ethylene with a number of polar monomers. Their catalytic mechanisms have been extensively studied but not fully understood at the electronic structure level. The energy decomposition analysis, complemented with the inspection of the natural orbitals for chemical valence, reveals that their catalytic activity can be rationalized in terms of the so-called trans effect. Furthermore, our analysis shows that the competition for the σ donation of the two ligands PMe3 and L, of the palladium phosphine sulfonate complexes, to the same orbital of Pd in the trans isomer and to different orbitals in the cis isomer is the origin of the trans effect. Although the dominance of the phosphine group prevents an efficient interaction of the ligand L with the Pd atom, the large stabilization gained by the phosphine group renders a very stable trans complex.

Quantum chemical study of the catalytic activation of methane by copper oxide and copper hydroxide cations.

The activation of methane and its subsequent conversion into more valuable feedstocks under ambient conditions are regarded as one of the major challenges in contemporary catalysis, due to its thermodynamically strong and kinetically inert C-H bond. Several enzymes and synthetic bioinorganic systems perform the activation of C-H bonds in methane and small hydrocarbons, mediated by transition metal mononuclear centers. Among them, monocopper cores and, in particular, CuO(+) and CuOH(+) have been suggested as efficient catalytic centers; this activity has not been experimentally proven until very recently, mainly due to the difficulty to produce sufficient amounts of active species to demonstrate the bond activation processes. The theoretical study presented here provides a thorough quantum chemical description of the activity of both species, together with molecular level insight into the elementary steps of the experimentally observed reactions. Post-HF (CCSD(T), CASPT2) and Density Functional Theory (DFT) methods have been used to unravel detailed electronic and mechanistic aspects of the reaction paths. Our study reveals the decisive role of the oxygen-centered radical in the reactivity of both species, and the improvement of the reactivity as a result of the protonation of the active species.

A QM/MM study of the complexes formed by aluminum and iron with serum transferrin at neutral and acidic pH.

Serum transferrin (sTf) transports iron in serum and internalizes in cells via receptor mediated endocytosis. Additionally, sTf has been identified as the predominant aluminum carrier in serum. Some questions remain unclear about the exact mechanism for the metal release or whether the aluminum and iron show the same binding mode during the entire process. In the present work, simulation techniques at quantum and atomic levels have been employed in order to gain access into a molecular level understanding of the metal-bound sTf complex, and to describe the binding of Al(III) and Fe(III) ions to sTf. First, hybrid quantum mechanics/molecular mechanics (QM/MM) molecular dynamics (MD) simulations were carried out in order to analyze the dynamics of the aluminum-loaded complex, taking into account the different pH conditions in blood and into the cell. Moreover, the complexes formed by transferrin with Al(III) and Fe(III) were optimized with high level density functional theory (DFT)/MM methods. All these results indicate that the interaction mode of Al(III) and Fe(III) with sTf change upon different pH conditions, and that the coordination of Al(III) and Fe(III) is not equivalent during the metal intake, transport and release processes. Our results emphasize the importance of the pH on the metal binding and release mechanism and suggest that Al(III) can follow the iron pathway to get access into cells, although once there, it may show a different binding mode, leading to a different mechanism for its release.

Ab initio study of microsolvated Al3+-aromatic amino acid complexes.

The systematic microhydration of Al(3+)-aromatic amino acid complexes is studied by both B3LYP/G03 and PBE/CPMD methods, considering the different binding sites available. The binding affinity of water molecules together with the structural and thermochemical changes triggered by the solvation of the metal are discussed, which are found to be dominated by the charge and size of the metal cation, yielding a very subtle equilibrium between the steric hindrance and the charge transfer to the metal. Some structures previously seen to be unfavored in the gas phase are stabilized upon microhydration, without the need of including bulk solvent effects.

Complexation of Al(III) by aromatic amino acids in the gas phase.

The coordination properties of three natural aromatic amino acids (AAAs)-phenylalanine (Phe), tyrosine (Tyr), and tryptophan (Trp)-to AlIII are studied in this work, devoting special attention to the role of the aromatic side chain. A comparison with aluminum(III)-alanine complexes is also presented. The polarizability arising from the ring has been seen to be a key factor in the stability of the complexes, with the order being Trp-AlIII > Tyr-AlIII > Phe-AlIII, starting from the most stable one. Cation-pi interactions between the metal and the aromatic ring are present in the lowest energy conformers, especially for Trp, which seems to be very well suited for these kinds of interactions, occurring with both the six- and five-membered rings of the indole side chain. The most stable coordination mode for the three AAAs is found to be tricoordinated with the N and O of the backbone chain and the aromatic ring, as was found theoretically and experimentally for other metals.