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1.
Front Neural Circuits ; 18: 1414452, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38978957

RESUMO

As an evolutionarily ancient sense, olfaction is key to learning where to find food, shelter, mates, and important landmarks in an animal's environment. Brain circuitry linking odor and navigation appears to be a well conserved multi-region system among mammals; the anterior olfactory nucleus, piriform cortex, entorhinal cortex, and hippocampus each represent different aspects of olfactory and spatial information. We review recent advances in our understanding of the neural circuits underlying odor-place associations, highlighting key choices of behavioral task design and neural circuit manipulations for investigating learning and memory.


Assuntos
Odorantes , Animais , Condutos Olfatórios/fisiologia , Olfato/fisiologia , Humanos , Percepção Olfatória/fisiologia , Percepção Espacial/fisiologia , Encéfalo/fisiologia
2.
ArXiv ; 2024 Jan 22.
Artigo em Inglês | MEDLINE | ID: mdl-37873012

RESUMO

Neuroscience research has evolved to generate increasingly large and complex experimental data sets, and advanced data science tools are taking on central roles in neuroscience research. Neurodata Without Borders (NWB), a standard language for neurophysiology data, has recently emerged as a powerful solution for data management, analysis, and sharing. We here discuss our labs' efforts to implement NWB data science pipelines. We describe general principles and specific use cases that illustrate successes, challenges, and non-trivial decisions in software engineering. We hope that our experience can provide guidance for the neuroscience community and help bridge the gap between experimental neuroscience and data science.

4.
J Neural Eng ; 13(6): 066013, 2016 12.
Artigo em Inglês | MEDLINE | ID: mdl-27762238

RESUMO

OBJECTIVE: Behavioral neuroscience studies in freely moving rodents require small, light-weight implants to facilitate neural recording and stimulation. Our goal was to develop an integrated package of 3D printed parts and assembly aids for labs to rapidly fabricate, with minimal training, an implant that combines individually positionable microelectrodes, an optical fiber, zero insertion force (ZIF-clip) headstage connection, and secondary recording electrodes, e.g. for electromyography (EMG). APPROACH: Starting from previous implant designs that position recording electrodes using a control screw, we developed an implant where the main drive body, protective shell, and non-metal components of the microdrives are 3D printed in parallel. We compared alternative shapes and orientations of circuit boards for electrode connection to the headstage, in terms of their size, weight, and ease of wire insertion. We iteratively refined assembly methods, and integrated additional assembly aids into the 3D printed casing. MAIN RESULTS: We demonstrate the effectiveness of the OptoZIF Drive by performing real time optogenetic feedback in behaving mice. A novel feature of the OptoZIF Drive is its vertical circuit board, which facilities direct ZIF-clip connection. This feature requires angled insertion of an optical fiber that still can exit the drive from the center of a ring of recording electrodes. We designed an innovative 2-part protective shell that can be installed during the implant surgery to facilitate making additional connections to the circuit board. We use this feature to show that facial EMG in mice can be used as a control signal to lock stimulation to the animal's motion, with stable EMG signal over several months. To decrease assembly time, reduce assembly errors, and improve repeatability, we fabricate assembly aids including a drive holder, a drill guide, an implant fixture for microelectode 'pinning', and a gold plating fixture. SIGNIFICANCE: The expanding capability of optogenetic tools motivates continuing development of small optoelectric devices for stimulation and recording in freely moving mice. The OptoZIF Drive is the first to natively support ZIF-clip connection to recording hardware, which further supports a decrease in implant cross-section. The integrated 3D printed package of drive components and assembly tools facilities implant construction. The easy interfacing and installation of auxiliary electrodes makes the OptoZIF Drive especially attractive for real time feedback stimulation experiments.


Assuntos
Optogenética/métodos , Estimulação Luminosa/métodos , Impressão Tridimensional , Próteses e Implantes , Animais , Comportamento Animal , Estimulação Elétrica , Eletrodos Implantados , Eletromiografia/instrumentação , Eletromiografia/métodos , Desenho de Equipamento , Músculos Faciais/inervação , Músculos Faciais/fisiologia , Camundongos
5.
J Neurophysiol ; 115(4): 1797-809, 2016 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-26792880

RESUMO

In the rodent whisker system, a key model for neural processing and behavioral choices during active sensing, whisker motion is increasingly recognized as only part of a broader motor repertoire employed by rodents during active touch. In particular, recent studies suggest whisker and head motions are tightly coordinated. However, conditions governing the selection and temporal organization of such coordinated sensing strategies remain poorly understood. We videographically reconstructed head and whisker motions of freely moving mice searching for a randomly located rewarded aperture, focusing on trials in which animals appeared to rapidly "correct" their trajectory under tactile guidance. Mice orienting after unilateral contact repositioned their whiskers similarly to previously reported head-turning asymmetry. However, whisker repositioning preceded head turn onsets and was not bilaterally symmetric. Moreover, mice selectively employed a strategy we term contact maintenance, with whisking modulated to counteract head motion and facilitate repeated contacts on subsequent whisks. Significantly, contact maintenance was not observed following initial contact with an aperture boundary, when the mouse needed to make a large corrective head motion to the front of the aperture, but only following contact by the same whisker field with the opposite aperture boundary, when the mouse needed to precisely align its head with the reward spout. Together these results suggest that mice can select from a diverse range of sensing strategies incorporating both knowledge of the task and whisk-by-whisk sensory information and, moreover, suggest the existence of high level control (not solely reflexive) of sensing motions coordinated between multiple body parts.


Assuntos
Objetivos , Movimento , Tato , Vibrissas/fisiologia , Animais , Cabeça/fisiologia , Masculino , Camundongos , Percepção do Tato
6.
Artigo em Inglês | MEDLINE | ID: mdl-24110113

RESUMO

The rodent whisker system is a common model for somatosensory neuroscience and sensorimotor integration. In support of ongoing efforts to assess neural stimulation approaches for future sensory prostheses, in which we deliver optogenetic stimulation to the somatosensory cortex of behaving mice, we must coordinate feedback in real time with active sensing whisker motions. Here we describe methods for extracting the times of whisker palpations from bilateral bipolar facial electromyograms (EMG). In particular, we show onset times extracted offline from EMG envelopes lead whisker motion onsets extracted from high speed video (HSV) by ≈ 16 ms. While HSV provides ground truth for sensing motions, it is not a feasible source of real time information suitable for neurofeedback experiments. As an alternative, we find the temporal derivative of the EMG envelope reliably predicts whisker motion onsets with short latency. Thus EMG, although providing noisy and partial information, can serve well as an input to control algorithms for testing neural processing of active sensing information, and providing stimulation for artificial touch experiments.


Assuntos
Eletromiografia/métodos , Face/fisiologia , Palpação/métodos , Córtex Somatossensorial/fisiologia , Tato/fisiologia , Animais , Camundongos , Movimento/fisiologia , Estimulação Física/métodos , Vibrissas/fisiologia
7.
Artigo em Inglês | MEDLINE | ID: mdl-23576956

RESUMO

Motivated by experiments employing optogenetic stimulation of cortical regions, we consider spike control strategies for ensembles of uncoupled integrate and fire neurons with a common conductance input. We construct strategies for control of spike patterns, that is, multineuron trains of action potentials, up to some maximal spike rate determined by the neural biophysics. We emphasize a constructive role for parameter heterogeneity, and find a simple rule for controllability in pairs of neurons. In particular, we determine parameters for which common drive is not limited to inducing synchronous spiking. For large ensembles, we determine how the number of controllable neurons varies with the number of observed (recorded) neurons, and what collateral spiking occurs in the full ensemble during control of the subensemble. While complete control of spiking in every neuron is not possible with a single input, we find that a degree of subensemble control is made possible by exploiting dynamical heterogeneity. As most available technologies for neural stimulation are underactuated, in the sense that the number of target neurons far exceeds the number of independent channels of stimulation, these results suggest partial control strategies that may be important in the development of sensory neuroprosthetics and other neurocontrol applications.


Assuntos
Potenciais de Ação , Algoritmos , Neurônios , Optogenética/métodos , Potenciais de Ação/fisiologia , Neurônios/fisiologia , Distribuição Aleatória
8.
Nat Neurosci ; 14(9): 1118-20, 2011 Jul 24.
Artigo em Inglês | MEDLINE | ID: mdl-21785436

RESUMO

The thalamic reticular nucleus (TRN) is hypothesized to regulate neocortical rhythms and behavioral states. Using optogenetics and multi-electrode recording in behaving mice, we found that brief selective drive of TRN switched the thalamocortical firing mode from tonic to bursting and generated state-dependent neocortical spindles. These findings provide causal support for the involvement of the TRN in state regulation in vivo and introduce a new model for addressing the role of this structure in behavior.


Assuntos
Potenciais de Ação/fisiologia , Potenciais Somatossensoriais Evocados/fisiologia , Neurônios/fisiologia , Dispositivos Ópticos , Córtex Somatossensorial/fisiologia , Núcleos Talâmicos/fisiologia , Animais , Proteínas de Bactérias/genética , Mapeamento Encefálico , Channelrhodopsins , Eletroencefalografia/métodos , Eletromiografia , Glutamato Descarboxilase/metabolismo , Imageamento Tridimensional , Luz , Proteínas Luminescentes/genética , Camundongos , Camundongos Endogâmicos C57BL , Camundongos Transgênicos , Microscopia Confocal , Vias Neurais/fisiologia , Técnicas de Patch-Clamp , Córtex Somatossensorial/citologia , Núcleos Talâmicos/citologia , Proteínas Vesiculares de Transporte de Aminoácidos Inibidores/genética
9.
Neuron ; 57(4): 599-613, 2008 Feb 28.
Artigo em Inglês | MEDLINE | ID: mdl-18304488

RESUMO

Peripheral sensory organs provide the first transformation of sensory information, and understanding how their physical embodiment shapes transduction is central to understanding perception. We report the characterization of surface transduction during active sensing in the rodent vibrissa sensory system, a widely used model. Employing high-speed videography, we tracked vibrissae while rats sampled rough and smooth textures. Variation in vibrissa length predicted motion mean frequencies, including for the highest velocity events, indicating that biomechanics, such as vibrissa resonance, shape signals most likely to drive neural activity. Rough surface contact generated large amplitude, high-velocity "stick-slip-ring" events, while smooth surfaces generated smaller and more regular stick-slip oscillations. Both surfaces produced velocities exceeding those applied in reduced preparations, indicating active sensation of surfaces generates more robust drive than previously predicted. These findings demonstrate a key role for embodiment in vibrissal sensing and the importance of input transformations in sensory representation.


Assuntos
Tato/fisiologia , Vibrissas/fisiologia , Animais , Fenômenos Biomecânicos/métodos , Aprendizagem por Discriminação/fisiologia , Estimulação Física/métodos , Ratos , Ratos Long-Evans , Ratos Sprague-Dawley
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