Ten-Eleven Translocation Genes are Downregulated in Endometriosis.

Our previous whole genome expression analysis of endometriomas suggested dysregulation of the ten-eleven translocation genes (TET1, TET2, and TET3), involved in converting 5- methylcytosine to 5-hydroxymethylcytosine (5-hmC). The objective of this study was to validate the expression of TET genes in ectopic and eutopic endometrium and in primary cultures of human endometrial stromal fibroblasts (HESF) during in vitro decidualization and to quantify 5-hmC levels in patients with endometriosis. Blood, eutopic endometrium, and endometriotic tissues were collected at time of gynecologic surgery. HESF cultures were created from eutopic endometrium of women without (HESF-CONTROL) and with endometriosis (HESF-ENDO) and underwent in vitro decidualization. Genomic DNA from blood and tissues underwent quantification of the absolute amount of 5-hmC using ELISA. The expression of TET1, TET2, and TET3 was decreased in endometriosis compared to non-endometriosis control eutopic endometrium. Surprisingly, the global amount of 5-hmC was higher in ectopic endometrium than control eutopic endometrium, while genomic DNA from blood of women with endometriosis contained statistically significantly less 5-hmC than women without endometriosis. Expression of TET1, TET2, and TET3 was decreased in non-decidualized HESFENDO. Upon in vitro decidualization, control HESF showed decreased expression of TET3, while decidualized HESF-ENDO showed no statistically significant change in expression of TET1, TET2, or TET3. These results indicate that the TET genes are downregulated in ectopic endometrium and in HESF-ENDO, and suggest for the first time that TET genes play a role in endometriosis. High global amounts of 5-hmC in endometriotic tissues suggest unique epigenetic regulation in these tissues.

Surface emission determination of volatile organic compounds (VOC) from a closed industrial waste landfill using a self-designed static flux chamber.

Closed landfills can be a source of VOC and odorous nuisances to their atmospheric surroundings. A self-designed cylindrical air flux chamber was used to measure VOC surface emissions in a closed industrial landfill located in Cerdanyola del Vallès, Catalonia, Spain. The two main objectives of the study were the evaluation of the performance of the chamber setup in typical measurement conditions and the determination of the emission rates of 60 different VOC from that industrial landfill, generating a valuable database that can be useful in future studies related to industrial landfill management. Triplicate samples were taken in five selected sampling points. VOC were sampled dynamically using multi-sorbent bed tubes (Carbotrap, Carbopack X, Carboxen 569) connected to SKC AirCheck 2000 pumps. The analysis was performed by automatic thermal desorption coupled with a capillary gas chromatograph/mass spectrometry detector. The emission rates of sixty VOC were calculated for each sampling point in an effort to characterize surface emissions. To calculate average, minimum and maximum emission values for each VOC, the results were analyzed by three different methods: Global, Kriging and Tributary area. Global and Tributary area methodologies presented similar values, with total VOC emissions of 237 ± 48 and 222 ± 46 g day(-1), respectively; however, Kriging values were lower, 77 ± 17 gd ay(-1). The main contributors to the total emission rate were aldehydes (nonanal and decanal), acetic acid, ketones (acetone), aromatic hydrocarbons and alcohols. Most aromatic hydrocarbon (except benzene, naphthalene and methylnaphthalenes) and aldehyde emission rates exhibited strong correlations with the rest of VOC of their family, indicating a possible common source of these compounds. B:T ratio obtained from the emission rates of the studied landfill suggested that the factors that regulate aromatic hydrocarbon distributions in the landfill emissions are different from the ones from urban areas. Environmental conditions (atmospheric pressure, temperature and relative humidity) did not alter the pollutant emission fluxes.

Characterization and determination of the odorous charge in the indoor air of a waste treatment facility through the evaluation of volatile organic compounds (VOCs) using TD-GC/MS.

Municipal solid waste treatment facilities are generally faced with odorous nuisance problems. Characterizing and determining the odorous charge of indoor air through odour units (OU) is an advantageous approach to evaluate indoor air quality and discomfort. The assessment of the OU can be done through the determination of volatile organic compounds (VOCs) concentrations and the knowledge of their odour thresholds. The evaluation of the presented methodology was done in a mechanical-biological waste treatment plant with a processing capacity of 245.000 tons year(-1) of municipal residues. The sampling was carried out in five indoor selected locations of the plant (Platform of Rotating Biostabilizers, Shipping warehouse, Composting tunnels, Digest centrifugals, and Humid pre-treatment) during the month of July 2011. VOC and volatile sulphur compounds (VSCs) were sampled using multi-sorbent bed (Carbotrap, Carbopack X, Carboxen 569) and Tenax TA tubes, respectively, with SKC AirCheck 2000 pumps. The analysis was performed by automatic thermal desorption (ATD) coupled with a capillary gas chromatography (GC)/mass spectrometry detector (MSD). One hundred and thirty chemical compounds were determined qualitatively in all the studied points (mainly alkanes, aromatic hydrocarbons, alcohols, aldehydes, esters, and terpenes), from which 86 were quantified due to their odorous characteristics as well as their potentiality of having negative health effects. The application of the present methodology in a municipal solid waste treatment facility has proven to be useful in order to determine which type of VOC contribute substantially to the indoor air odorous charge, and thus it can be a helpful method to prevent the generation of these compounds during the treatment process, as well as to find a solution in order to suppress them.

Evaluation of the effect of different sampling time periods and ambient air pollutant concentrations on the performance of the Radiello diffusive sampler for the analysis of VOCs by TD-GC/MS.

The effect of different sampling exposure times and ambient air pollutant concentrations on the performance of Radiello® samplers for analysis of volatile organic compounds (VOCs) is evaluated. Quadruplicate samples of Radiello® passive tubes were taken for 3, 4, 7 and 14 days. Samples were taken indoors during February and March 2010 and outdoors during July 2010 in La Canonja (Tarragona, Spain). The analysis was performed by automatic thermal desorption (ATD) coupled with capillary gas chromatography (GC)/mass spectrometry detection (MS). The results show significant differences (t-test, p < 0.05) between the amounts of VOCs obtained from the sum of two short sampling periods and a single equivalent longer sampling period for 65% of all the data. 17% of the results show significantly larger amounts of pollutant in the sum of two short sampling periods. Back diffusion due to changes in concentrations together with saturation and competitive effects between the compounds during longer sampling periods could be responsible for these differences. The other 48% of the results that are different show significantly larger amounts in the single equivalent longer sampling period. The remaining 35% of the results do not show significant differences. Although significant differences are observed in the amount of several VOCs collected over two shorter sampling intervals compared to the amount collected during a single equivalent longer sampling period, the ratios obtained are very close to unity (between 0.7 and 1.2 in 75% of cases). We conclude that Radiello® passive samplers are useful tools if their limitations are taken into account and the manufacturer's recommendations are followed.

Comparative study of the adsorption performance of an active multi-sorbent bed tube (Carbotrap, Carbopack X, Carboxen 569) and a Radiello(®) diffusive sampler for the analysis of VOCs.

A simple comparison is made to evaluate the relative performance of active and passive sampling methods for the analysis of volatile organic compounds (VOCs) in ambient air. The active sampling is done through a multi-sorbent bed tube (Carbotrap, Carbopack X, Carboxen 569) created in our laboratory and the passive sampling through the Radiello(®) diffusive sampler specified for thermal desorption (filled with Carbograph 4). Daily duplicate samples of multi-sorbent bed tubes were taken during a period of 14 days. During the same period of time, quadruplicate samples of Radiello(®) tubes were taken during 3 days, 4 days, 7 days and 14 days. The sampling was carried out indoors during the months of February and March 2010 and outdoors during the month of July 2010 in La Canonja (Tarragona, Spain). The analysis was performed by automatic thermal desorption (ATD) coupled with capillary gas chromatography (GC)/mass spectrometry detector (MSD). The analytical performance of the two sampling approaches was evaluated by describing several quality assurance parameters. The results show that the analytical performances of the methodologies studied are quite similar. They display low limits of detection, good precision, accuracy and desorption efficiency, and low levels of breakthrough for multi-sorbent bed tubes. However, the two monitoring methods produced varying air-borne concentration data for most of the studied compounds, and the Radiello(®) samplers generally gave higher results. Sampling rates (Q(k)) were determined experimentally, and their values were higher than those supplied by the producer. As the experimental calculation of Q(k) values is generally carried out by the suppliers in exposure chambers with only the target compounds present in the air samples, as well as in concentrations dissimilar to those found in ambient air, the use of constant settled Q(k) can lead to inaccurate results in complex samples.

Comparative study of the adsorption performance of a multi-sorbent bed (Carbotrap, Carbopack X, Carboxen 569) and a Tenax TA adsorbent tube for the analysis of volatile organic compounds (VOCs).

A comparison between two types of adsorbent tubes, the commonly used Tenax TA and a multi-sorbent bed (Carbotrap, Carbopack X, Carboxen 569) tube developed in our laboratory, has been done to evaluate their usefulness in the analysis of VOCs in ambient air. Duplicate indoor and outdoor samples of Tenax TA and multi-sorbent tubes of 10, 20, 40, 60 and 90l were taken in Barcelona city (Spain) on July and October of 2009. Breakthrough values (defined as %VOCs found in the back tube) were determined for all sampling volumes connecting two sampling tubes in series. The analysis was performed by automatic thermal desorption (ATD) coupled with capillary gas chromatography (GC)/mass spectrometry detector (MSD). Significant differences between the concentrations obtained-from multi-sorbent bed and Tenax TA tubes are observed for the very volatile compounds (56 degrees C

VOCs and PAHs emissions from creosote-treated wood in a field storage area.

In this study, the emissions of volatile organic compounds (VOCs, in this case aromatic hydrocarbons containing one benzene ring and furans) and polycyclic aromatic hydrocarbons (PAHs) from wood recently treated with creosote are examined. The VOCs and PAHs were identified and quantified in the gas phase. Additionally, the PAHs were quantified in the particulate phase. Glass multi-sorbent tubes (Carbotrap, Carbopack X, Carboxen-569) were used to hold the VOCs. The analysis was performed using automatic thermal desorption (ATD) coupled with capillary gas chromatography/mass spectrometry (GC/MS). PAHs vapours were collected on XAD-2 resin, and particulate matter was collected on glass fibre filters. The PAHs were analysed using GC/MS. The main components of the vapours released from the creosote-treated wood were naphthalene, toluene, m+p-xylene, ethylbenzene, o-xylene, isopropylbenzene, benzene and 2-methylnaphthalene. VOCs emission concentrations ranged from 35 mg m(-3) of air on the day of treatment to 5 mg m(-3) eight days later. PAHs emission concentrations ranged from 28 microg m(-3) of air on the day of treatment to 4 microg m(-3) eight days later. The air concentrations of PAHs in particulate matter were composed predominantly of benzo[b+j]fluoranthene, benzo[a]anthracene, chrysene, fluoranthene, benzo[e]pyrene and 1-methylnaphthalene. The emission concentrations of particulate polycyclic aromatic hydrocarbons varied between 0.2 and 43.5 ng m(-3). Finally, the emission factors of VOCs and PAHs were determined.

Turbot TNFalpha gene: molecular characterization and biological activity of the recombinant protein.

The tumor necrosis factor (TNF) superfamily is composed by several proteins with similar structure and functions. One of the main representatives of this family is TNF-alpha (TNFalpha), a proinflammatory cytokine which is produced by different immune cells and presents a wide variety of activities. Using the RACE technique, we have cloned and sequenced the turbot TNF cDNA. The analysis of its sequence showed several conserved motifs characteristic of members of the TNFalpha family. A phylogenetic tree constructed with different TNFs of fish and mammals grouped our sequence within the fish TNFalpha cluster. Therefore, the turbot TNF here studied was identified as TNFalpha. The complete TNFalpha gene was obtained by gene walking, and, similarly to the other known fish TNFalpha genes, presented three introns and four exons. A PCR was designed to study the turbot TNFalpha expression in vivo using as stimulus the bacteria Vibrio pelagius strain Hq222 and virus VHSV. The expression of the cytokine happened early after injection, and it was dependent on the pathogen injected and organ analyzed. Virus induced a higher TNFalpha expression, but this response was shorter in time than that induced by bacteria. In addition, TNFalpha expression was in general higher in kidney than in liver, as expected since the former is the haematopoietic organ of fish. The turbot recombinant TNFalpha (rTNFalpha) was obtained by IPTG induction of bacteria transformed with the pET15b-TNFalpha construct, and it was purified in native conditions. The recombinant protein was approximately 20 kDa in size, and its biological activity was assessed in vitro. No effect of the rTNFalpha neither alone nor in combination with LPS was observed on the chemiluminescence activity of turbot macrophages at any time tested. However, NO production was enhanced by the recombinant protein alone or with LPS 72 h after the addition of the treatments. Finally, turbot rTNFalpha was able to recruit and activate inflammatory cells when injected in gilthead seabream, although to a lesser extent than gilthead seabream rTNFalpha.