Environmental and economic assessment of a floating constructed wetland to rehabilitate eutrophicated waterways.

While the reduced carbon footprint of conventional constructed wetlands (CW) for wastewater treatment has been described in the literature, far less information is available on the economic performance of floating filters and their application for the treatment of other pressing environmental problems such as freshwater eutrophication. This investigation describes the technical characteristics and the environmental life cycle assessment (E-LCA) and a life cycle cost (LCC) analysis of a Typha domingensis floating constructed wetland (FCW) designed and constructed to rehabilitate eutrophicated waterways and which also produces biomass for animal feed. The analysis is based on a precise material, energy and economic inventory from a demonstration project built in the Alagón river basin (central Spain). The E-LCA followed a cradle-to-grave approach, used the EF3.0 impact assessment methodology and was referred to two complementary functional units related to the water treatment capacity of the floating filter: 1 m3 of treated water and 1 kg of N fixed, both over a 10-year operating cycle. Climate change emissions were estimated at 0.012 kg CO2 eq./m3, which included 0.082 kg CO2 eq./m3 caused by the construction, operation and decommissioning of the infrastructure, minus 0.070 kg CO2 eq./m3 credits from the production of fodder for animal feed. Considering its nitrogen uptake capacity, this may be represented as 0.845 kg CO2 eq./kg N. Most of this carbon footprint comes from the construction (63.2 %) and the operation (31.1 %) stages, with the former being dominated by auxiliary materials (mainly plastics and cereal straw) needed to build the infrastructure and the energy system (mainly PV panels). This same pattern is replicated in most other environmental categories and the aggregated single score. Further research is needed to quantify with precision direct CH4 and N2O emissions produced during the operation stage, whose contribution can be significant (up to 64.8 % over indirect LCA emissions). The LCC analysis resulted in discounted expenses over the 10-year cycle of 44,083 € and revenues derived from the sale of fodder for animal feed of 11,429 €, resulting in a net present value of 32,654 €. These expenses may be represented as 0.302 €/m3 of treated water (or 21.1 €/kg of N fixed). The monetary cost and environmental footprint per functional unit of floating CW are lower than those reported for other conventional small-scale wastewater treatment technologies.

Age ratio, crippling losses and factors affecting daily hunting bags of European Turtle-dove in Spain: Implications for sustainable harvest management of a declining migratory species.

Knowledge of seasonal variation in hunting pressure and the demographic composition of hunting bags is likely to be important for the effective management of quarry species. Such knowledge is particularly important where regulatory mechanisms aim to avoid the over-exploitation of quarry species having unfavourable conservation status. We compiled information on the age composition of harvested European Turtle-doves (Streptopelia turtur), and the daily numbers of doves shot and retrieved from 68 hunting estates spread across four Spanish regions. We use these data to describe temporal variation, and identify factors affecting daily hunting bags, age composition and crippling losses. We found that more juvenile doves were hunted than adults (and more than expected in a stable population) especially at the beginning of the hunting season, suggesting greater vulnerability of juveniles to hunting. The number of doves hunted each day declined through the hunting season and increased with the number of hunters present. Crippling losses averaged 9.6 % of all doves shot; applying this rate to recent Spanish government hunting statistics suggests under-recording of approximately 90,000 doves annually for the entire country. Our data on age composition and crippling losses can serve as direct inputs into future models of sustainable harvest for Turtle Dove in Europe. Our results highlight the importance of improving knowledge about the variables influencing take at the hunting event level for designing more efficiency regulatory measures.

Hunting Levels of Turtle Dove (Streptopelia turtur) at Sites Where Food Is Provided: Implications for Sustainable Harvesting.

In some regions of Spain, hunting grounds conduct management targeting the European turtle dove (Streptopelia turtur), a commonly hunted species, and unsustainable harvesting levels at these sites have been identified as one of the factors responsible for the species' decline across its range. In hunting grounds where food was provided, we estimated the local turtle dove abundance before the hunting season, productivity (juvenile/adult ratio) and harvesting levels using harvest data from managed grounds over 4 years (2009, 2015, 2019 and 2020). Compared to previous research, a higher productivity value was found (median 1.67, range 1.24-4.15) in grounds providing more food for a longer period. We calculated that the harvesting rate should not exceed 37% of the estimated turtle dove population size (35-45%). Significant differences were found between the estimated local turtle dove abundance using a removal sampling protocol and the number of birds observed by hunters before the hunting season, which suggests that in a high proportion of grounds, the latter method may have led to bird overestimation and overharvesting. Our research supports the current European Union's harvest management plan to promote sustainable hunting in grounds where targeted management is conducted.

Drug design and repurposing with DockThor-VS web server focusing on SARS-CoV-2 therapeutic targets and their non-synonym variants.

The COVID-19 caused by the SARS-CoV-2 virus was declared a pandemic disease in March 2020 by the World Health Organization (WHO). Structure-Based Drug Design strategies based on docking methodologies have been widely used for both new drug development and drug repurposing to find effective treatments against this disease. In this work, we present the developments implemented in the DockThor-VS web server to provide a virtual screening (VS) platform with curated structures of potential therapeutic targets from SARS-CoV-2 incorporating genetic information regarding relevant non-synonymous variations. The web server facilitates repurposing VS experiments providing curated libraries of currently available drugs on the market. At present, DockThor-VS provides ready-for-docking 3D structures for wild type and selected mutations for Nsp3 (papain-like, PLpro domain), Nsp5 (Mpro, 3CLpro), Nsp12 (RdRp), Nsp15 (NendoU), N protein, and Spike. We performed VS experiments of FDA-approved drugs considering the therapeutic targets available at the web server to assess the impact of considering different structures and mutations to identify possible new treatments of SARS-CoV-2 infections. The DockThor-VS is freely available at www.dockthor.lncc.br .

Prevalence and genetic diversity of avian haemosporidian parasites in wild bird species of the order Columbiformes.

Diseases can play a role in species decline. Among them, haemosporidian parasites, vector-transmitted protozoan parasites, are known to constitute a risk for different avian species. However, the magnitude of haemosporidian infection in wild columbiform birds, including strongly decreasing European turtle doves, is largely unknown. We examined the prevalence and diversity of haemosporidian parasites Plasmodium, Leucocytozoon and subgenera Haemoproteus and Parahaemoproteus in six species of the order Columbiformes during breeding season and migration by applying nested PCR, one-step multiplex PCR assay and microscopy. We detected infections in 109 of the 259 screened individuals (42%), including 15 distinct haemosporidian mitochondrial cytochrome b lineages, representing five H. (Haemoproteus), two H. (Parahaemoproteus), five Leucocytozoon and three Plasmodium lineages. Five of these lineages have never been described before. We discriminated between single and mixed infections and determined host species-specific prevalence for each parasite genus. Observed differences among sampled host species are discussed with reference to behavioural characteristics, including nesting and migration strategy. Our results support previous suggestions that migratory birds have a higher prevalence and diversity of blood parasites than resident or short-distance migratory species. A phylogenetic reconstruction provided evidence for H. (Haemoproteus) as well as H. (Parahaemoproteus) infections in columbiform birds. Based on microscopic examination, we quantified parasitemia, indicating the probability of negative effects on the host. This study provides a large-scale baseline description of haemosporidian infections of wild birds belonging to the order Columbiformes sampled in the northern hemisphere. The results enable the monitoring of future changes in parasite transmission areas, distribution and diversity associated with global change, posing a potential risk for declining avian species as the European turtle dove.

High prevalence of Trichomonas gallinae in wild columbids across western and southern Europe.

BACKGROUND: Avian trichomonosis is known as a widespread disease in columbids and passerines, and recent findings have highlighted the pathogenic character of some lineages found in wild birds. Trichomonosis can affect wild bird populations including endangered species, as has been shown for Mauritian pink pigeons Nesoenas mayeri in Mauritius and suggested for European turtle doves Streptopelia turtur in the UK. However, the disease trichomonosis is caused only by pathogenic lineages of the parasite Trichomonas gallinae. Therefore, understanding the prevalence and distribution of both potentially pathogenic and non-pathogenic T. gallinae lineages in turtle doves and other columbids across Europe is relevant to estimate the potential impact of the disease on a continental scale. RESULTS: We examined 281 samples from four wild columbid species for Trichomonas infection and determined the genetic lineages. The overall prevalence was 74%. There were significant differences between the species (P = 0.007). The highest prevalence was found in stock doves Columba oenas (86%, n = 79) followed by wood pigeons Columba palumbus (70%, n = 61) and turtle doves (67%, n = 65), while three of five collared doves Streptopelia decaocto (60%) were infected. We found seven different lineages, including four lineages present in columbids in the UK, one lineage already described from Spain and three new lineages, one of those found in a single turtle dove migrating through Italy and another one found in a breeding stock dove. Stock doves from Germany and collared doves from Malta were infected with a potentially pathogenic lineage (lineage A/B), which is known to cause lesions and mortality in columbids, raptors and finches. CONCLUSIONS: Generally, turtle doves showed high prevalence of Trichomonas infection. Furthermore, the potentially pathogenic lineage A/B (or genotype B according to previous literature) was found in a recovering stock dove population. Both findings are worrying for these columbid species due to the occasional epidemic character of trichomonosis, which can have severe negative effects on populations.

Experimental transmission of rabbit haemorrhagic disease virus (RHDV) from rabbit to wild mice (Mus spretus and Apodemus sylvaticus) under laboratory conditions.

Rabbit haemorrhagic disease (RHD) is a highly lethal and contagious viral disease that produces haemorrhagic lesions in liver and lungs of domestic and wild rabbits (Oryctolagus cuniculus). This study investigates the transmission of RHDV from infected rabbits to mice, based on the detection of viral RNA. Sixteen wild mice (Mus spretus, n=12 and Apodemus sylvaticus, n=4) were put in contact with nine rabbits inoculated with RHDV. No mice died following exposure to RHDV-infected rabbits or developed macroscopic haemorrhagic lesions. On the fourth day of contact, RHDV was detected by RT-PCR in the faeces of three of the four mice killed and in the livers of two of them. Three days after contact period with the inoculated rabbits (7th day of the experiment), RHDV was detected by RT-PCR in 100% (n=4) of the faeces and 50% (n=2) of the livers of euthanized animals. Ten days after contact period (14th day of the experiment), RHDV was not detected in the faeces or liver from any of the mice euthanized. However, 64days after contact period, RHDV was detected in the faeces of one mouse (1 of 4). We demonstrate cross-species transmission of RHDV-RNA from rabbit to rodent and the capability of RHDV-RNA to persist in mice for at least 10days after contact, and potentially up to two months, although viral replication within the rodent and/or infectivity was not evaluated in the present study.

Genomic evidence of demographic fluctuations and lack of genetic structure across flyways in a long distance migrant, the European turtle dove.

BACKGROUND: Understanding how past climatic oscillations have affected organismic evolution will help predict the impact that current climate change has on living organisms. The European turtle dove, Streptopelia turtur, is a warm-temperature adapted species and a long distance migrant that uses multiple flyways to move between Europe and Africa. Despite being abundant, it is categorized as vulnerable because of a long-term demographic decline. We studied the demographic history and population genetic structure of the European turtle dove using genomic data and mitochondrial DNA sequences from individuals sampled across Europe, and performing paleoclimatic niche modelling simulations. RESULTS: Overall our data suggest that this species is panmictic across Europe, and is not genetically structured across flyways. We found the genetic signatures of demographic fluctuations, inferring an effective population size (Ne) expansion that occurred between the late Pleistocene and early Holocene, followed by a decrease in the Ne that started between the mid Holocene and the present. Our niche modelling analyses suggest that the variations in the Ne are coincident with recent changes in the availability of suitable habitat. CONCLUSIONS: We argue that the European turtle dove is prone to undergo demographic fluctuations, a trait that makes it sensitive to anthropogenic impacts, especially when its numbers are decreasing. Also, considering the lack of genetic structure, we suggest all populations across Europe are equally relevant for conservation.

Detection of rabbit haemorrhagic disease virus (RHDV) in nonspecific vertebrate hosts sympatric to the European wild rabbit (Oryctolagus cuniculus).

Since its detection in China in 1984, rabbit haemorrhagic disease (RHD) has been the subject of numerous studies. Yet, the evolutionary origin of rabbit haemorrhagic disease virus (RHDV) is still under debate. For example, some aspects related to the epidemiology of the disease are still unknown, such as where the virus is hosted between RHD outbreaks. To detect the presence of RHDV in rabbit-sympatric micromammals, 51 rodents (29 Mus spretus and 22 Apodemus sylvaticus) and 31 rabbits (Oryctolagus cuniculus) from the same location in central Spain were analyzed. In those samples in which the virus was detected, a fragment of the VP60 protein gene from the RHDV capsid was sequenced and the phylogenetic relationships between them and other strains of RHDV in the Iberian Peninsula were analyzed. In total, five viral strains were identified in A. sylvaticus, M. spretus and O. cuniculus. All strains were found to be well supported within the clade of RHDV found in rabbits in the Iberian Peninsula. Moreover, one of the strains was found in all three species under study, which suggests the capability of RHDV to infect other mammals apart from the rabbit which have not yet been investigated. The transmission of the virus is discussed as well as its ecoepidemiological implications.

Evolutionary history and molecular epidemiology of rabbit haemorrhagic disease virus in the Iberian Peninsula and Western Europe.

BACKGROUND: Rabbit haemorrhagic disease virus (RHDV) is a highly virulent calicivirus, first described in domestic rabbits in China in 1984. RHDV appears to be a mutant form of a benign virus that existed in Europe long before the first outbreak. In the Iberian Peninsula, the first epidemic in 1988 severely reduced the populations of autochthonous European wild rabbit. To examine the evolutionary history of RHDV in the Iberian Peninsula, we collected virus samples from wild rabbits and sequenced a fragment of the capsid protein gene VP60. These data together with available sequences from other Western European countries, were analyzed following Bayesian Markov chain Monte Carlo methods to infer their phylogenetic relationships, evolutionary rates and demographic history. RESULTS: Evolutionary relationships of RHDV revealed three main lineages with significant phylogeographic structure. All lineages seem to have emerged at a common period of time, between ~1875 and ~1976. The Iberian Peninsula showed evidences of genetic isolation, probably due to geographic barriers to gene flow, and was also the region with the youngest MRCA.Overall, demographic analyses showed an initial increase and stabilization of the relative genetic diversity of RHDV, and a subsequent reduction in genetic diversity after the first epidemic breakout in 1984, which is compatible with a decline in effective population size. CONCLUSIONS: Results were consistent with the hypothesis that the current Iberian RHDV arose from a single infection between 1869 and 1955 (95% HPD), and rendered a temporal pattern of appearance and extinction of lineages. We propose that the rising positive selection pressure observed throughout the history of RHDV is likely mediated by the host immune system as a consequence of the genetic changes that rendered the virus virulent. Consequently, this relationship is suggested to condition RHDV demographic history.