Global phylogeography of the dolphinfish (Coryphaena hippurus): the influence of large effective population size and recent dispersal on the divergence of a marine pelagic cosmopolitan species.

Pelagic fish that are distributed circumtropically are characterised by a low population structure level as a result of a high capacity for dispersion and large population sizes. Nevertheless, historical and contemporary processes, including past demographic and/or range expansions, secondary contact, dispersal, gene flow, and the achievement of large effective population sizes, may play a part in the detection of divergence signals, especially in the case of tropical pelagic species, whose distribution range depends strongly on the sea surface temperature. The connectivity and historical demography of Atlantic, Indian, Pacific and Mediterranean populations of dolphinfish (Coryphaena hippurus) was studied using partial sequences of the mitochondrial DNA NADH dehydrogenase subunit 1 (ND1). AMOVA analyses revealed significant inter-oceanic divergence with three phylogroups located in the Indo-Pacific, Eastern Atlantic, and Mediterranean Sea, the last one being the most divergent. However, it was not possible to clearly observe any genetic differentiation between the Indo-Pacific and Atlantic populations, as has been reported for most tropical pelagic species of tuna and billfishes. This supports the assumption of recent dispersal among basins facilitated by the actual continuous distribution of dolphinfish populations. Moreover, the lack of a divergence signal for populations separated by the Panamanian Isthmus reveals that genetic drift does not exert a strong influence on tropical pelagic species with large effective population sizes.

The panmixia paradigm of eastern Pacific olive ridley turtles revised: consequences for their conservation and evolutionary biology.

Previous studies of the olive ridley Lepidochelys olivacea population structure in the tropical eastern Pacific have indicated the existence of a single panmictic population ranging from Costa Rica to Mexico. This information has been used to design specific management measures to conserve primary nesting beaches in Mexico. However, little is known about olive ridleys in the Baja California Peninsula, their northernmost reproductive limit, where recent observations have shown differences in nesting female behaviour and size of hatchlings relative to other continental rookeries. We used mtDNA control region sequences from 137 turtles from five continental and four peninsular nesting sites to determine whether such differences correspond to a genetic distinction of Baja California olive ridleys or to phenotypic plasticity associated with the extreme environmental nesting conditions of this region. We found that genetic diversity in peninsular turtles was significantly lower than in continental nesting colonies. Analysis of molecular variance revealed a significant population structure (Phi ST = 0.048, P = 0.006) with the inclusion of peninsular samples. Our results: (i) suggest that the observed phenotypic variation may be associated with genetic differentiation and reproductive isolation; (ii) support the recent colonization of the eastern Pacific by Lepidochelys; (iii) reveal genetic signatures of historical expansion and colonization events; and (iv) significantly challenge the notion of a single genetic and conservation unit of olive ridleys in the eastern Pacific. We conclude that conservation measures for olive ridleys in Mexico should be revised to grant peninsular beaches special attention.

Decoupling of molecular and morphological evolution in deep lineages of a meiobenthic harpacticoid copepod.

Molecular and biochemical genetic analyses have revealed that many marine invertebrate taxa, including some well-studied and presumably cosmopolitan species, are actually complexes of sibling species. When morphological differences are slight and estimated divergence times are old, data suggest either unusually high rates of sequence evolution or long-term morphological stasis. Here, five gene regions (mitochondrial cytochrome oxidase subunit I and large-subunit ribosomal 16S rDNA and nuclear ITS1, 5.8S rDNA, and ITS2) were analyzed in four geographic samples of the meiobenthic harpacticoid copepod Cletocamptus deitersi. Molecular sequences revealed four extremely differentiated molecular lineages with unalignable nuclear intergenic spacers and mitochondrial uncorrected divergences reaching 25% (cytochrome oxidase) and 36% (16S rDNA). These levels of divergence are greater than those reported previously for congeneric species in diverse invertebrate taxa, including crustaceans. The nominally intraspecific divergence matches or exceeds the corresponding divergence from a known congener (Cletocamptus helobius). A molecular clock applied to the cytochrome oxidase subunit I data suggests that these lineages split in the Miocene, consistent with the fossil record of a North American Cletocamptus from the same period. Morphological differences among the major lineages are subtle but congruent with the patterns of genetic differentiation. Our conclusion, based on concordant patterns of variation in two mitochondrial and three nuclear gene regions, as well as morphological observations, is that C. deitersi in North America is composed of at least four separate species by the genealogical concordance, phylogenetic, and morphological-species criteria. Alternative explanations for the deep phylogenetic nodes and apparent morphological stasis, including high rates of sequence evolution, balancing selection, and genetic signatures of historical events, are considered unlikely.

Cryptic species of rockfishes (Sebastes: Scorpaenidae) in the southern hemisphere inferred from mitochondrial lineages.

We used mitochondrial DNA sequence variation of Sebastes from the southeastern Pacific and three localities in the South Atlantic to address long-standing systematic and evolutionary issues regarding the number of species in the Southern Hemisphere. Sequences of the hypervariable mitochondrial control region were obtained from 10 specimens of S. capensis from South Africa (n = 5) and from Tristan da Cunha Island (n = 5) and 27 of S. oculatus from Valparaiso, Chile (n = 10), and the Falkland Islands (n = 17). Results of the study include (1) significant levels of genetic differentiation among the sampled populations (phi ST = 0.225, P < .000001), thus indicating limited gene flow; (2) corroboration of the existence of two different lineages of austral Sebastes corresponding to S. capensis and S. oculatus; (3) finding that S. capensis is not restricted to Tristan da Cunha and South Africa, but is widespread across the South Atlantic; (4) the position of S. capensis as the ancestral lineage of the austral Sebastes; (5) the existence of a third evolutionary lineage with high levels of genetic divergence, particularly abundant in the south-western Atlantic, which may be recognized as a third austral species of Sebastes.

Evolution of a mitochondrial cytochrome b gene sequence in the species-rich genus sebastes (Teleostei, Scorpaenidae) and its utility in testing the monophyly of the subgenus Sebastomus.

The ecologically diverse and species-rich rockfishes (Sebastes) are a useful group for the study of marine speciation. The monophyly of the genus is generally accepted, as is the validity of most of the numerous species found along the West Coast of North America. However, the subgeneric groupings that would help in the proposal and interpretation of various speciation schemes are poorly supported based on widely overlapping morphological characters. The use of genetic characters provides an alternative approach. In this study, we present the first quantitative analysis supporting the monophyly of all 14 species of the subgenus Sebastomus among 54 congeners. The structural features and evolution of the 750 bp of the cytochrome b gene used to test the monophyly were similar to those of other vertebrates. Low levels of intrageneric sequence divergence (<10%) and incipient levels of saturation at third-codon positions were found in the gene. The monophyly of Sebastomus was supported in extensive phylogenetic analyses using distance, cladistic, and likelihood methods. Further corroboration was obtained from permutation- and simulation-based statistical tests.

Molecular evolution, systematics, and zoogeography of the rockfish subgenus Sebastomus (Sebastes, Scorpaenidae) based on mitochondrial cytochrome b and control region sequences.

Sebastomus is one of the most species-rich subgenera of Sebastes, whose monophyly is well supported by morphological and molecular data. We present the first description of the complete nucleotide sequence of the mitochondrial cytochrome b gene and the partial sequence of the control region of the 14 species of Sebastomus. We used these data in phylogenetic analyses to investigate their evolutionary relationships. Extremely low levels of sequence divergence indicated a recent ancestry of these species, suggesting a very rapid radiation within the last million years. The molecular data revealed two main clades within Sebastomus, each with species of different affinities that invaded new habitats from the subgeneric center of distribution. The rapid speciation in this lineage was manifested in the poor resolution of some nodes in the phylogeny. Internal fertilization and viviparity in Sebastes may have played an important role in the sudden acquisition of reproductive barriers during its radiation. The mitochondrial DNA data suggest that prolific speciation in Sebastomus may have been associated with rapid lineage sorting punctuated by allopatric reproductive isolation subsequent to dispersal events and, perhaps, by sympatric reproductive isolation associated with internal fertilization.