Evidences for local non-centrosymmetricity and strong phonon anomaly in EuCu2As2: a Raman spectroscopy and lattice dynamics study.

Phonon modes and their association with the electronic states have been investigated for the metallic EuCu2As2system. In this work, we present the Raman spectra of this pnictide system which clearly shows the presence of seven well defined peaks above 100 cm-1that is consistent with the locally non-centrosymmetricP4/nmmcrystal structure, contrary to that what is expected from the accepted symmorphicI4/mmmstructure. Lattice dynamics calculations using theP4/nmmsymmetry attest that there is a commendable agreement between the calculated phonon spectra at the Γ point and the observed Raman mode frequencies, with the most intense peak at∼232 cm-1being ascribed to the A1gmode. Temperature dependent Raman measurements show that there is a significant deviation from the expected anharmonic behaviour around 165 K for the A1gmode, with anomalies being observed for several other modes as well, although to a lesser extent. Attempts are made to rationalize the observed anomalous behavior related to the hardening of the phonon modes, with parallels being drawn from metal dichalcogenide and allied systems. Similarities in the evolution of the Raman peak frequencies with temperature seem to suggest a strong signature of a subtle electronic density wave instability below 165 K in this compound.

Spectropathologic endorsement of ocular carotenoids for early detection of diabetic retinopathy.

Diabetic retinopathy (DR) is a common health concern. Unfortunately, the metabolic pathway causing DR is yet to be understood. The carotenoid level in the human body is known to protect the health of the eyes. In this work, resonance Raman spectroscopy and multivariate analysis of the spectral data of human serum are reported as next-generation spectropathologic tools to detect retinal degeneration efficiently. The proposed technique shows promise by endorsing ocular carotenoids as a critical biomarker for such pathosis. Furthermore, the multivariate analysis of the spectral data distinguishes between two different stages of the disease. The machine learning algorithm is used to estimate a significant accuracy of 94% of the proposed model for the classification. As the carotenoid level can be controlled by dietary intake, we believe that the reported results also indicate a therapeutic role of the same in DR.

Biomolecular response to hour-long ultralow field microwave radiation: An effective coarse-grained model simulation.

Various electronic devices, which we commonly use, radiate microwaves. Such external perturbation influences the functionality of biomolecules. In an ultralow field, the cumulative response of a molecule is expected only over a time scale of hours. To study the structural dynamics of biomolecules over hours, we adopt a simple methodology for constructing the coarse-grained structure of the protein molecule and solve the Langevin equation under different working potentials. In this approach, each amino acid residue of a biomolecule is mapped onto a number of beads, a few for the backbone, and few for the side chain, depending on the complexity of its chemical structure. We choose the force field in such a way that the dynamics of the protein molecule in the presence of ultralow radiation field of microvolt/nm could be followed over the time frame of 2 h. We apply the model to describe a biomolecule, hen egg white lysozyme, and simulate its structural evolution under ultralow strength electromagnetic radiation. The simulation revealed the finer structural details, like the extent of exposure of bioactive residues and the state of the secondary structures of the molecule, further confirmed from spectroscopic measurements [details are available in Phys. Rev. E 97, 052416 (2018)10.1103/PhysRevE.97.052416 and briefly described here]. Though tested for a specific system, the model is quite general. We believe that it harnesses the potential in studying the structural dynamics of any biopolymer under external perturbation over an extended time scale.

Role of defects and grain boundaries in the thermal response of wafer-scale hBN films.

With more widespread applications of nanotechnology, heat dissipation in nanoscale devices is becoming a critical issue. We study the thermal response of wafer-scale hexagonal boron nitride (hBN) layers, which find potential applications as ideal substrates in two dimensional devices. Sapphire-supported thin hBN films, 2'' in size and of different thicknesses, were grown using metalorganic vapour phase epitaxy. These large-scale films exhibit wrinkles defects and grain boundaries over their entire area. The shift of [Formula: see text] phonon mode with temperature is analysed by considering the cumulative contribution of anharmonic phonon decay along with lattice thermal expansion, defect, and strain modulation. The study demonstrates that during heat treatment the strain evolution plays a dominating role in governing the characteristics of the wrinkled thinner films. Interestingly we find that both defects and strain determine the spectral line-width of these wafer-scale films. To the end, from Raman line-width, the changes in phonon lifetime in delaminated and as-grown films is estimated. The results suggest the possibility of a reduction in thermal transport in these wafer-scale films compared to their bulk counterpart.

Restriction of microwave-induced amyloid fibrillar growth by gold nanoparticles.

Microwave radiations from various electronic devices are of serious health concern. In this article, using spectroscopic measurements, we show that the microwave radiation of strength 22 dBm and frequency 10 GHz facilitates protein fibrillation. However, this adverse effect of low-field radiation can be restricted by the presence of biocompatible citrate-capped gold nanoparticles. The dissipative field by metallic particles is able to disrupt the fibrillar network. We believe that the obtained results paved a way to find a therapeutic measure to combat fibrillation related diseases.

Microwave-radiation-induced molecular structural rearrangement of hen egg-white lysozyme.

We have investigated the nonthermal effect of 10 GHz/22 dBm microwave radiation on hen egg-white lysozyme (HEWL) over different irradiation times, ranging from 2 min to 1 h. To ensure a control over the radiation parameters, a pair of microwave rectangular waveguides is used to irradiate the samples. Optical spectroscopic measurements, which include UV-visible absorption spectroscopy, Raman spectroscopy, and far UV CD spectroscopy, reveal the exposure of the buried tryptophan (Trp) residues of the native molecule between 15 and 30 min of radiation. The higher duration of the perturbation leads to a compact structure of the protein and Trp residues are buried again. Interestingly, we do not find any change in the secondary structure of the protein even for 1 h duration of radiation. The relaxation dynamics of the irradiated molecules also has been discussed. We have shown that the molecules relax to their native configuration in 7-8 h after the radiation field is turned off. The structural rearrangement over the above timescale has further been probed by a model calculation, based on a modified Langevin equation. Our coarse-grained simulation approach utilizes the mean of atomic positions and net atomic charge of each amino acid of native HEWL to mimic the initial conformation of the molecule. The modified positions of the residues are then calculated for the given force fields. The simulation results reveal the nonmonotonous change in overall size of the molecule, as observed experimentally. The radiation parameters used in our experiments are very similar to those of some of the electronic devices we often come across. Thus, we believe that the results of our studies on a simple protein structure may help us in understanding the effect of radiation on complex biological systems as well.

Rare earth indates (RE: La-Yb): influence of the synthesis route and heat treatment on the crystal structure.

Rare earth indates are an interesting class of compounds with rich crystallography. The present study explores the crystallographic phases observed in REInO3 (RE: La-Yb) systems and their dependence on synthesis routes and annealing temperature. All REInO3 compositions were synthesized by a solid state route as well as gel-combustion synthesis (GC) followed by annealing at different temperatures. The systems were well characterized by powder XRD studies and were analysed by Rietveld refinement for the structural parameters. The cell parameters were observed to decrease in accordance with the trend in ionic radii on proceeding from lighter to heavier rare earth ions. Interestingly, the synthesis route and the annealing temperature had a profound bearing on the phase relationships observed in the REInO3 series. The solid state synthesized samples depicted an orthorhombic phase (Pbnm) field for LaInO3 to SmInO3, followed by a hexagonal-type phase (P63cm) for GdInO3 to DyInO3. However, the phase field distribution was greatly influenced upon employing gel-combustion (GC) wherein both single-phasic hexagonal and orthorhombic phase fields were found to shrink. Annealing the GC-synthesized compositions to still higher temperatures (1250 °C) further evolved the phase boundaries. An important outcome of the study is observance of polymorphism in SmInO3 which crystallized in the hexagonal phase when synthesized by GC and orthorhombic phase by solid state synthesis. This reveals the all-important role played by synthesis conditions. The existence and energetics of the two polymorphs have been elucidated and discussed with the aid of theoretical studies.

Revealing magnetic ordering and spin-phonon coupling in Y1-x Tb x MnO3 (0.1 ⩽ x ⩽ 0.3) compounds.

The structural and magnetic properties of the Y1-x Tb x MnO3 (0.1 ⩽ x ⩽ 0.3) compounds were investigated. Neutron diffraction patterns for all three samples, recorded at room temperature (RT), were fitted to the nuclear structure confirming the paramagnetic nature of the compounds. At 2.8 K, for the x = 0.1 sample magnetic moments of the Tb3+ ionic as well as Mn3+ ionic were ordered. At 5 K for the x = 0.2 sample only the Mn3+ ionic magnetic moments were ordered. There were six sites for Mn atoms. Three on the z = 0 plane and three on the z = 0.5 plane (where z corresponds to +c axis).The Mn3+ionic moments were confined to the a-b plane with a net magnitude of 2.78(3) µ B, and 2.90(3) µ B for the x = 0.1 and the x = 0.2 samples. The Tb3+ionic moments had a magnitude of 1.36(4) µ B at 2.8 K and were aligned antiferromagnetically along the crystallographic c-axis for the x = 0.1 sample. The low moment in comparison with Mn3+ free ions has been attributed to crystalline electric fields similar to that found in the parent compound YMnO3 and also in another rare earth manganite viz HoMnO3. The x = 0.3 sample was found to be a canonical spin glass. To investigate the role of the above spin ordering in Y1-x Tb x MnO3 in governing the phonon dynamics, temperature dependent Raman measurements were carried out. We observed the deviation of the phonon frequency near 685 cm-1 and its line-width from the expected anharmonic behaviour around magnetic ordering temperature for Tb substituted compounds with x = 0.1 and 0.2. This was attributed to the spin-phonon coupling in these systems. The anomalous behaviour of this phonon mode in the canonical spin glass compound with x = 0.3, indicated that the coupling sustained even in the presence of only local magnetic ordering.

Mapping of the electronic band gap along the axis of a single InAs/InSbxAs1-x heterostructured nanowire.

Herein, we report the graded electronic band gap along the axis of individual heterostructured WZ-ZB InAs/InSb0.12As0.88 nanowires. Resonance Raman imaging has been exploited to map the axial variation in the second excitation gap energy (E1) at the high symmetry point (L point) of the Brillouin zone. We relate the origin of the observed evolution of the gap energy to the fine tuning of the alloy composition from the tip towards the interface of the nanowire. The electronic band structures of InAs, InSb and InSbxAs1-x alloy systems at x = 0.125, 0.25, 0.50, 0.75 and 0.875, using the all electron density functional theory code Wien2k, are reported. The measured band gap along the axis of the InAs/InSb0.12As0.88 nanowire is correlated with the calculated gap energy at the A point and the L point of the Brillouin zone for InAs and InSb0.125As0.875, respectively. We draw a one-to-one correspondence between the variation of the E1 gap and the fundamental E0 gap in the calculated electronic band structure and propose the graded fundamental gap energy across the axis of the nanowire.

Type II band alignment in InAs zinc-blende/wurtzite heterostructured nanowires.

In this article we demonstrate type-II band alignment at the wurtzite/zinc-blende hetero-interface in InAs polytype nanowires using resonance Raman measurements. Nanowires were grown with an optimum ratio of the above mentioned phases, so that in the electronic band alignment of such NWs the effect of the difference in the crystal structure dominates over other perturbing effects (e.g. interfacial strain, confinement of charge carriers and band bending due to space charge). Experimental results are compared with the band alignment obtained from density functional theory calculations. In resonance Raman measurements, the excitation energies in the visible range probe the band alignment formed by the E 1 gap of wurtzite and zinc-blende phases. However, we expect our claim to be valid also for band alignment near the fundamental gap at the heterointerface.

Evidence of two oxidation states of copper during aggregation of hen egg white lysozyme (HEWL).

In vitro fibrillation of hen egg white lysozyme (HEWL) causes complete reduction of Cu(II) to Cu(I) at pH 7. Here in the present article, we have shown the presence of both Cu(II) and Cu(I) at pH 11 during fibrillation of HEWL using electron paramagnetic resonance and Raman spectroscopy. Our results suggest the existence of a partially reducing environment during fibrillation of hen egg white lysozyme at pH 11. The fibrillation process is governed by the pH of the solution and maximum fibrillation is found to occur at pH 11. Fibrils formed in the absence of Cu(II) were also found to cause significant hemolysis of RBC.

Effect of (-)-epigallocatechin gallate on the fibrillation of human serum albumin.

Human serum albumin (HSA), the most abundant plasma protein in the human body is known to form fibrils under partial denaturing conditions. Natural polyphenols are known to interact with HSA and some polyphenols have been shown to be potent inhibitors of amyloid fibrillation. (-)-Epigallocatechin gallate (EGCG), the major component of green tea is known to inhibit amyloid fibrillation. In this report, we have investigated the effect of EGCG on native HSA as well as on the fibrillation process of HSA from amide III band analysis of their respective visible Raman spectra. The differential role of the tryptophan (Trp214) residue present in domain II of HSA in the absence and presence of EGCG has been pointed out using fluorescence anisotropy and visible Raman spectroscopy.

Does shining light on gold colloids influence aggregation?

In this article we revisit the much-studied behavior of self-assembled aggregates of gold colloidal particles. In the literature, the electrostatic interactions, van der Waals interactions, and the change in free energy due to ligand-ligand or ligand-solvent interactions are mainly considered to be the dominating factors in determining the characteristics of the gold aggregates. However, our light scattering and imaging experiments clearly indicate a distinct effect of light in the growth structure of the gold colloidal particles. We attribute this to the effect of a non-uniform distribution of the electric field in aggregated gold colloids under the influence of light.

Distribution of protein Ramachandran psi (ψ) angle using non-resonance visible raman scattering measurements.

Knowing the distribution of Ramachandran angles helps in understanding peptide and protein backbone conformation. Empirical relations are proposed to correlate the spectral profile of the amide III3 band, obtained from ultraviolet resonance Raman measurements (UVRR), with the Ramachandran dihedral psi angle distribution in small peptide and protein molecules, in different environmental conditions (Mikhonin et al. J. Phys. Chem. B 2006, 110, 1928-1943). It has also been used for more complicated structures, like large globular proteins and protein fibrils. In our work here, we use visible Raman spectra and available empirical relations to obtain similar correlations for human serum albumin, hen egg white lysozyme, and human gamma crystallin. We also report the dihedral angle distribution in fibrils and a denatured protein in an ethanol environment using the same spectroscopic technique.

Structural differences between native Hen egg white lysozyme and its fibrils under different environmental conditions.

The difference in molecular structure of native HEWL and its fibrils, grown at a pH value near physiological pH 7.4 and at a pH value just above the pI, 10.7 in presence and absence of Cu(II) ions, is discussed. We focus on differences between the molecular structure of the native protein and fibrils using principal component analysis of their Raman spectra. The overlap areas of the scores of each species are used to quantify the difference in the structure of the native HEWL and fibrils in different environments. The overall molecular structures are significantly different for fibrils grown at two pH values. However, in presence of Cu(II) ions, the fibrils have similarities in their molecular structures at these pH environments. Spectral variation within each species, as obtained from the standard deviations of the scores in PCA plots, reveals the variability in the structure within a particular species.

Interaction of (-)-epigallocatechin gallate with lysozyme-conjugated silver nanoparticles.

The interaction of lysozyme (Lyz)-conjugated silver (Ag) nanoparticles with (-)-epigallocatechin gallate (EGCG), one of the major components of green tea, has been investigated. Interaction of a protein with ligand/drug molecules perturbs the conformation of secondary and tertiary structures of the protein. We have demonstrated the conformational changes in the tertiary structures of the Lyz molecules on EGCG binding using surface-enhanced Raman scattering (SERS) and circular dichroism (CD) spectroscopic measurements. From the analysis of the amide I band of Lyz in SERS and CD spectra, the site of interaction of EGCG with protein molecules in Lyz-conjugated Ag particles has been identified. Spectroscopic evidence for the conformational response of Trp62 and Trp63, in the ß-domain of the protein, to the binding of EGCG has been discussed.

Fibrillation of hen egg white lysozyme triggers reduction of copper(II).

Copper is known to exert diverse effects on the self-association of proteins and has been found in amyloid deposits that are involved in neurodegenerative disease processes. The effects of the metal ion on the protein during fibrillation were investigated by fluorescence, circular dichroism spectroscopy and fluorescence microscopy. We report for the first time, the complete reduction of Cu(II)→Cu(I) in vitro during fibrillation of hen egg white lysozyme at pH 7. This was confirmed by the lack of any signal for Cu(II) in electron paramagnetic resonance spectroscopy and quantification of Cu(I) was achieved by a bathocuproine disulfonate based assay.

Evidence of conformational changes in adsorbed lysozyme molecule on silver colloids.

In this article, we discuss metal-protein interactions in the Ag-lysozyme complex by spectroscopic measurements. The analysis of the variation in relative intensities of SERS bands reveals the orientation and the change in conformation of the protein molecules on the Ag surface with time. The interaction kinetics of metal-protein complexes has been analyzed over a period of 3h via Raman measurements. Our analysis indicates that the Ag nanoparticles most likely interact with Trp123 which is in close proximity to Phe34 of the lysozyme molecule.

Plasmon coupling between gold nanorod and adsorbed organic molecule.

In this article, the dipolar response of gold nanorods on the adsorbed organic molecule, benzonitrile, has been investigated. We estimate the average aspect ratio of nanorods using TEM measurements. The longitudinal and transverse plasmon modes of nanorods are measured and analyzed using theoretical estimates. Well characterized gold nanorods are further used to establish the effect of plasmon coupling on the characteristics of the ligand molecule. Making use of the dipolar response function model we are able to match the experimental and theoretical values of the frequencies of vibrational modes of ad-molecules upon adsorption on the rod surface. We believe that our studies using optical probes can explain the effect of the metallic nanorod, as a whole, on the ad molecules and can thereby serve as a sensitive tool to understand metal-ligand interactions for such metallic nanostructures.

A study on adsorption of acetonitrile on gold nanorods by non-resonant Raman measurements and density functional theory calculations.

Adsorption of acetonitrile (Ac) molecules on gold (Au) nanorods has been investigated by Raman spectroscopic measurements and density functional theory (DFT) calculations. DFT calculations provide a valuable insight into the underlying structure of the metal-molecule complex. From the best agreement between the observed and the calculated Raman frequencies and also from other spectroscopic observations, we propose that Ac molecules interact with Au nanorods and form an [Ac+2Au](0)-like complex on the surface of nanostructures. The environmental effect has also been taken into consideration to explain the Raman activity of the complex.