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1.
Sci Total Environ ; 913: 169297, 2024 Feb 25.
Artigo em Inglês | MEDLINE | ID: mdl-38103616

RESUMO

Inter-basin water diversion (IBWD) is a viable strategy to tackle water scarcity and quality degradation due to climate change and increasing water demand in headwaters regions. Nevertheless, the capacity of IBWD to mitigate the impacts of climate change on water quality has rarely been quantified, and the underlying processes are not well understood. Therefore, this study aims to elucidate how the IBWD manipulated total phosphorus (TP) loading dilution and conveying patterns under climate change and determine a critical threshold for the quantity of water entering downstream reservoirs (WIN) for operational scheduling. To resolve this issue, climate-driven hydrologic variability over a 60-year period was derived utilizing the least square fitting approach. Subsequently, six scenarios evaluating the response of in-lake TP concentrations (TPL) to increased temperatures and IBWDs of 50 %, 100 %, and 150 % from the baseline water volume in 2030 and 2050 were studied by employing a calibrated hydrological-water quality model (SWAT-YRWQM). In the next stage, three datasets derived from mathematical statistics based on the observed data, the Vollenweider formula, and modeled projections were integrated to formulate best management practices. The results revealed that elevated air temperatures would lead to reduced annual catchment runoff but increased IBWD. Additionally, our study quantified the IBWD potential for mitigating water quality degradation, indicating the adverse effects of climate change on TPL would be weakened by 4.2-14.4 %. A critical threshold for WIN was also quantified at 617 million m3, maintaining WIN at or near 617 million m3 through optimized operational scheduling of IBWD could effectively restrict external inflow TP loading to lower levels. This study clearly illustrates the intricate interactive effects of climate change and IBWD on aquatic environments. The methodology elucidated in this study for determining the critical threshold of WIN could be applied in water management for analogous watershed-receiving waterbody systems.

2.
Front Oncol ; 13: 1132514, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37064148

RESUMO

Background: Artificial intelligence (AI) discrimination models using single radioactive variables in recognition algorithms of lung nodules cannot predict lung cancer accurately. Hence, we developed a clinical model that combines AI with blood test variables to predict lung cancer. Methods: Between 2018 and 2021, 584 individuals (358 patients with lung cancer and 226 individuals with lung nodules other than cancer as control) were enrolled prospectively. Machine learning algorithms including lasso regression and random forest (RF) were used to select variables from blood test data, Logistic regression analysis was used to reconfirm the features to build the nomogram model. The predictive performance was assessed by performing the receiver operating characteristic (ROC) curve analysis as well as calibration, clinical decision and impact curves. A cohort of 48 patients was used to independently validate the model. The subgroup application was analyzed by pathological diagnosis. Findings: A total of 584 patients were enrolled (358 lung cancers, 61.30%,226 patients for the control group) to establish the model. The integrated model identified eight potential factors including carcinoembryonic antigen (CEA), AI score, Pro-Gastrin Releasing Peptide (ProGRP), cytokeratin 19 fragment antigen21-1(CYFRA211), squamous cell carcinoma antigen(SCC), indirect bilirubin(IBIL), activated partial thromboplastin time(APTT) and age. The area under the curve (AUC) of the nomogram was 0.907 (95% CI, 0.881-0.929). The decision and clinical impact curves showed good predictive accuracy of the model. An AUC of 0.844 (95% CI, 0.710 - 0.932) was obtained for the external validation group. Conclusion: The nomogram model integrating AI and clinical data can accurately predict lung cancer, especially for the squamous cell carcinoma subtype.

3.
Theriogenology ; 205: 40-49, 2023 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-37084502

RESUMO

This study was designed to investigate the roles of melatonin administration during different sensitive windows of the first half of pregnancy in the function and gene expression of the ovary and placenta, hormone profile, and pregnancy outcomes in rabbits. Four equal experimental groups of 20 rabbits each were used. The first (FW), second (SW), and third (F + SW) groups comprised rabbits that orally received 0.7-mg melatonin/kg body weight during the first week, second weeks, and during both weeks of pregnancy; and the fourth group served as the control group (C). The total number of visible follicles significantly increased in all melatonin-treated groups compared with that in the C group. In all melatonin-treated groups, the number of absorbed fetuses was significantly reduced, whereas the weights of embryonic sacs and fetuses were higher than in the C group. The placenta efficiency was significantly increased in the F + SW group compared with that in the C group, followed by the SW group, whereas no significant difference in the placenta efficiency was found between the FW and C groups. Melatonin treatments significantly improved the expression of antioxidants, gonadotropin receptors, and cell cycle regulatory genes in the ovary, whereas only FW treatment upregulated steroidogenic acute regulatory gene. Compared with the C and FW groups, melatonin treatments during the SW and F + SW significantly upregulated the expression of most genes in the placenta. The concentrations of estradiol were significantly higher in the SW and F + SW groups than in the FW and C groups. The concentrations of progesterone were significantly increased in the FW group compared with those in the C and SW groups, whereas the F + SW group showed intermediate values. The litter size and weight at birth significantly increased in all melatonin-treated groups compared with those in the C group. The second week of pregnancy seems to be a sensitive window for melatonin actions during pregnancy. Thus, melatonin administration during the second week of pregnancy can be effective in improving pregnancy outcomes in rabbits.


Assuntos
Melatonina , Gravidez , Coelhos , Feminino , Animais , Ovário , Placenta/metabolismo , Parto , Resultado da Gravidez
4.
J Adv Med Educ Prof ; 11(1): 42-49, 2023 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-36685147

RESUMO

Introduction: Professionalism, as one of the core competencies of physicians, is essential for providing the patients with higher quality care. It is an abstract concept and its education and assessment need objective and operational methods. The present study aimed at teaching the concepts of professionalism based on a scenario-based approach using role-playing and reflection. Methods: This is a pre-experimental study (one-group pretest-posttest design) with a mixed method approach. The study was conducted on 18 medical students (by voluntary sampling method) who had enrolled in the Medical Ethics Course at Kashan University of Medical Sciences in 2020. Twelve scenarios were designed about the most prevalent issues of medical professionalism. In each session, one group of students played out their scenarios and then, the participants and instructors discussed their role-playing. Participants' knowledge about professionalism was assessed at the beginning and end of each session, and they completed a satisfaction questionnaire and a reflection form. T-tests (one-sample and paired T-test) were applied for statistical analysis. Quantitative and qualitative data were analyzed using SPSS software (version 26), and P<0.05 was considered statistically significant. Conventional content analysis was used to analyze the qualitative data. Results: The mean scores of the participants' knowledge in post-test were significantly higher than those in the pre-test (P=0.042, t=-2.074). The mean scores of the participants' role-playing quality (p<0.001) and satisfaction (p=0.001) were significantly higher than their corresponding test values. Qualitative analysis of the participants' reflections revealed their satisfaction with the study intervention. Conclusion: The scenarios, role-playing, and reflection could provide an opportunity for operationalizing the concepts of professionalism and deep learning of students. Medical instructors need to improve their knowledge and skills of using active methods in teaching professionalism to medical students.

5.
Genes Cancer ; 13: 52-59, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36471781

RESUMO

AIM: Cervical cancer (CC) is one of the most common cancers in women. Recent advances in screening and vaccination against the papilloma virus (HPV) have increased protection against CC. However, there is no effective diagnostic biomarker and treatment approach during the course of the disease. The current study is thus aimed to evaluate the changes in the expression of lncRNA associated with microvascular invasion in hepatocellular carcinoma (lncRNA MVIH) and its diagnostic value as a biomarker in CC patients. MATERIALS AND METHODS: One-hundred and fifteen (n = 115) pairs of CC primary tumor and marginal non-tumor tissue samples were obtained from Tabriz Valiasr International Hospital (Tabriz, Iran). RNA extraction and cDNA synthesis followed by quantitative reverse transcriptase PCR (qRT-PCR) were considered to investigate alterations in the expression levels of MVIH in patients with CC. The associations between MVIH expression changes and clinicopathological features as well as its potential as a diagnostic biomarker were assessed using SPSS and GraphPad prism software and the receiver operating characteristic (ROC). RESULTS: The expression levels of MVIH were significantly higher in CC tumors as compared to marginal non-tumor samples (p < 0.0001). Overexpression of MVIH was significantly associated with younger age (p = 0.033), lymph node metastasis (p = 0.031), tumor invasion depth (p = 0.035), and squamous cell type of CC (p = 0.019). The ROC analysis for MVIH as a diagnostic biomarker revealed the respective sensitivity and specificity of 67.83 and 80. CONCLUSIONS: Overexpression of MVIH in CC tumors suggests its oncogenic role during tumorigenesis. Thus, it may serve as a potential diagnostic biomarker.

6.
Artigo em Inglês | MEDLINE | ID: mdl-35580209

RESUMO

In the current study, the expression levels of two important lncRNAs, i.e., AK058003 and APOC1P1, in breast tumors were compared with adjacent non-tumor tissues to evaluate their diagnostic potential in a panel of 121 patients. Total RNA was extracted, cDNA was synthesized and expression of AK058003 and APOC1P1 was assessed using qRT-PCR. A significant overexpression and positive correlation between these two lncRNAs were observed in tumor tissues compared to marginal healthy tissues. In conclusion, the examined lncRNAs were overexpressed in tumor tissues, suggesting their significant diagnostic value in breast cancer.


Assuntos
Neoplasias da Mama , RNA Longo não Codificante , Neoplasias da Mama/diagnóstico , Neoplasias da Mama/genética , Feminino , Regulação Neoplásica da Expressão Gênica , Humanos , RNA Longo não Codificante/genética , RNA Longo não Codificante/metabolismo
7.
Sci Rep ; 12(1): 5846, 2022 04 07.
Artigo em Inglês | MEDLINE | ID: mdl-35393477

RESUMO

The medicinal potential of marine invertebrates' bioactive components that may act as anti-COVID-19 demonstrated promising results. Ophiocoma dentata, which is common in the Red Sea, is one such source. Therefore, this study aimed to isolate a new compound from the brittle star, Ophiocoma dentata, and evaluate its efficacy as anti-COVID-19 in-silico and in-vitro. Standard procedures were followed in order to assess the isolated compound's preliminary toxicity and anti-inflammatory properties. Computer virtual screening technology through molecular docking and ADMET studies was conducted as well as a new steroid derivative was isolated for the first time, named 5α-cholesta-4(27), 24-dien-3ß, 23 ß-diol. Investigation of the Anti-Covid-19 activity of the isolated compound using a Plaque reduction assay revealed 95% inhibition at a concentration of 5 ng/µl (12.48 µM). Moreover, this compound showed an IC50 of 11,350 ± 1500 ng/ml against the normal fibroblast cells, indicating its safety. Interestingly, this compound exhibited anti-inflammatory activity with an IC50 of 51.92 ± 0.03 µg/ml compared to a reference drug's IC50 of 53.64 ± 0.01 µg/ml, indicating that this compound is a potent anti-inflammatory. In silico data have proved that the isolated compound is a promising viral inhibitor against SARS-CoV2 and is thus recommended as a future nature preventive and curative antiviral drug.


Assuntos
Tratamento Farmacológico da COVID-19 , Anti-Inflamatórios/farmacologia , Humanos , Simulação de Acoplamento Molecular , RNA Viral , SARS-CoV-2 , Esteroides
8.
J Gastrointest Cancer ; 53(3): 687-691, 2022 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-34478035

RESUMO

PURPOSE: Gastric cancer (GC) is one of the most frequent tumors worldwide and identification of a sensitive and specific prognostic biomarker is of great importance. Long non-coding RNAs (lncRNAs) play crucial roles in tumorigenesis of various malignancies. In the present study, we investigated lncRNA FOXD2-AS1 expression in gastric tumors and assessed its potential as a prognostic biomarker. METHODS: A total of 95 tumor and corresponding adjacent non-tumor tissue specimens were collected from patients with GC from Imam Reza hospital, Tabriz, Iran. Total RNA was isolated and FOXD2-AS1 expression was measured using quantitative reverse transcriptase (qRT)-PCR. RESULTS: FOXD2-AS1 was significantly upregulated in tumor samples as compared to non-tumor tissues (P < 0.0001). In addition, higher expression of FOXD2-AS1 was significantly associated with lymph node metastasis and Helicobacter pylori infection. The receiver operating characteristic (ROC) curve analysis revealed that FOXD2-AS1 might be served as a potential prognostic biomarker for GC. CONCLUSION: FOXD2-AS1 is upregulated in gastric tumors and can be used as a valuable biomarker in the prognosis of patients with GC.


Assuntos
Infecções por Helicobacter , Helicobacter pylori , RNA Longo não Codificante , Neoplasias Gástricas , Linhagem Celular Tumoral , Proliferação de Células/genética , Regulação Neoplásica da Expressão Gênica , Infecções por Helicobacter/complicações , Infecções por Helicobacter/genética , Helicobacter pylori/genética , Humanos , Prognóstico , RNA Longo não Codificante/metabolismo , Neoplasias Gástricas/genética , Neoplasias Gástricas/patologia
9.
J Gastrointest Cancer ; 53(4): 1014-1019, 2022 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-34766250

RESUMO

PURPOSE: Gastric cancer (GC) is a heterogeneous disease, and this heterogeneity significantly affects survival and treatment outcomes. Identification of molecular biomarkers specific for early-stage GC can help clinicians to choose more precise and effective treatment approaches. Long non-coding RNAs (lncRNAs) have the potential to be used as biomarkers because of their tissue specificity, stability, and availability in body fluids. In this study, we aimed to investigate changes in the expression levels of lncRNA KRT18P55 and to assess its biomarker potentials in patients with GC. METHODS: Tumor and non-tumor marginal tissues were collected from 102 patients at Noor-Nejat Hospital (Tabriz, Iran). RNA was isolated, and quantitative reverse transcriptase PCR (qRT-PCR) was performed to assess KRT18P55 expression levels in tumor and non-tumor tissue samples. The receiver operating characteristic (ROC) curve analysis was performed to evaluate potentials of KRT18P55 as a prognostic biomarker in GC. SPSS and GraphPad Prism software were used for data analysis. RESULTS: We found that KRT18P55 is significantly overexpressed in tumor as compared to non-tumor tissues (p < 0.0001). We found a significant association between KRT18P55 overexpression and intestinal GC subtype (p < 0.0001), lymph node metastasis (p = 0.013), and Helicobacter pylori infection (p = 0.033). Based on the ROC analysis, KRT18P55 showed a sensitivity and specificity of 53.92% and 77.45%, respectively. CONCLUSION: Overexpression of KRT18P55 in gastric tumors is suggestive of its oncogenic role in GC. In addition, KRT18P55 may be used as a potential prognosis biomarker and therapeutic target in intestinal GC subtype.


Assuntos
RNA Longo não Codificante , Neoplasias Gástricas , Humanos , Biomarcadores Tumorais/genética , Infecções por Helicobacter , Prognóstico , RNA Longo não Codificante/genética , Neoplasias Gástricas/genética , Neoplasias Gástricas/patologia
11.
Biomed Pharmacother ; 143: 112190, 2021 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-34560543

RESUMO

Brain metastasis (BM) is the most common event in patients with lung cancer. Despite multimodal treatments and advances in systemic therapies, development of BM remains one of the main factors associated with poor prognosis and mortality in patients with lung cancer. Therefore, better understanding of mechanisms involved in lung cancer brain metastasis (LCBM) is of great importance to suppress cancer cells and to improve the overall survival of patients. Several cancer-related genes such as EGFR and KRAS have been proposed as potential predictors of LCBM. In addition, there is ample evidence supporting crucial roles of non-coding RNAs (ncRNAs) in mediating LCBM. In this review, we provide comprehensive information on risk assessment, predictive, and prognostic panels for early detection of BM in patients with lung cancer. Moreover, we present an overview of LCBM molecular mechanisms, cancer driver genes, and ncRNAs which may predict the risk of BM in lung cancer patients. Recent clinical studies have focused on determining mechanisms involved in LCBM and their association with diagnosis, prognosis, and treatment outcomes. These studies have shown that alterations in EGFR, KRAS, BRAF, and ALK, as the most frequent coding gene alterations, and dysregulation of ncRNAs such as miR-423, miR-330-3p, miR-145, piR-651, and MALAT1 can be considered as potential biomarkers of LCBM.


Assuntos
Biomarcadores Tumorais/genética , Neoplasias Encefálicas/genética , Variação Genética , Neoplasias Pulmonares/genética , RNA não Traduzido/genética , Animais , Biomarcadores Tumorais/metabolismo , Neoplasias Encefálicas/metabolismo , Neoplasias Encefálicas/secundário , Regulação Neoplásica da Expressão Gênica , Humanos , Neoplasias Pulmonares/metabolismo , Neoplasias Pulmonares/patologia , Valor Preditivo dos Testes , Prognóstico , RNA não Traduzido/metabolismo , Medição de Risco , Fatores de Risco , Transdução de Sinais
12.
J Pharm Investig ; 51(6): 735-757, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34513113

RESUMO

Purpose: A novel coronavirus (COVID-19) that has not been previously identified in humans and has no specific treatment has recently spread. Treatment trials using antiviral and immune-modulating drugs such as hydroxychloroquine (HCQ) were used to control this viral outbreak however several side effects have emerged. Berberine (BER) is an alkaloid that has been reported to reveal some pharmacological properties including antioxidant and antimicrobial activities. Additionally, Zinc oxide nanoparticles (ZnO-NPs) possess potent antioxidant and anti-inflammatory properties. Therefore, this study was undertaken to estimate the efficiency of both BER and synthetic ZnO/BER complex as an anti-COVID-19 therapy. Methods: First, the ZnO/BER complex was prepared by the facile mixing method. Then in vitro studies on the two compounds were conducted including VeroE6 toxicity, anti-COVID-19 activity, determination of inhibitory activity towards papain-like proteinase (PL pro) and spike protein- and receptor- binding domain (RBD) as well as assessment of drug toxicity on RBCs. Results: The results showed that ZnO/BER complex acts as an anti-COVID-19 by inhibiting spike protein binding with angiotensin-converting enzyme II (ACE II), PL pro activity, spike protein and E protein levels, and expression of both E-gene and RNA dependent RNA polymerase (RdRp) at a concentration lower than that of BER or ZnO-NPs alone. Furthermore, ZnO/BER complex had antioxidant and antimicrobial properties where it prevents the auto oxidation of 2,2-Diphenyl-1-picrylhydrazyl (DPPH) and the culture of lower respiratory system bacteria that affected Covid 19 patients. The ZnO/BER complex prevented as well the HCQ cytotoxic effect on both RBC and WBC (in vitro) and hepatotoxicity, nephrotoxicity and anemia that occurred after HCQ long administration in vivo. Conclusion: The ZnO/BER complex can be accounted as promising anti-COVID 19 candidate because it inhibited the virus entry, replication, and assembly. Furthermore, it could be used to treat a second bacterial infection that took place in hospitalized COVID 19 patients. Moreover, ZnO/BER complex was found to eliminate the toxicity of long-term administration of HCQ in vivo.

13.
Environ Sci Pollut Res Int ; 28(37): 51369-51383, 2021 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-33982260

RESUMO

The present study attempts to assess the threat of water contamination in Persian Gulf by heavy metals (Fe, Cr, Pb, Cu, Zn, Cd, Se, and Ni) and its subsequent effects on five fish species including Scomberomorus guttatus (S. guttatus), Lethrinus nebulosus (L. nebulosus), Brachirus orientalis (B. orientalis), Pomadasys kaakan (P. kaakan), and Scomberomorus commerson (S. commerson). Water and fish samples from fourteen monitoring stations were obtained to determine the concentrations of contaminants in water and fish. Heavy metal pollution index (HMPI) and non-carcinogenic hazard quotient (NHQI) were employed to evaluate contamination level in water and fish muscle. The Kriging geostatistical method was employed to determine the spatial distribution of different heavy metals around petrochemical plants. The highest NHQI values for P. kaakan and B. orientalis species were 1.036 and 1.046, respectively. In both cases, the NHQI values were higher than the maximum allowable value of 1, indicating that both fish species were on the verge of contamination by heavy metals, which in turn makes the consumption of these fish highly hazardous to human health. The lowest NHQI value was observed in S. commerson species at a value of 0.394, indicating its harmlessness to human health. Overall, fish species living within the top 5 m of the water column (S. commerson and S. guttatus) were found to be less contaminated by heavy metals compared to species dwelling near the seafloor (P. kaakan and B. orientalis). Results also indicated the pollution absorption rate in S. commerson and S. guttatus were 0.45 and 3.4 mg/kg-year, while the corresponding values for the B. orientalis and L. nebulosus species were 6 and 2 mg/kg-year, respectively. P. kaakan species showed a pollution absorption rate of 3.2 mg/kg-year. High heavy metal concentrations of 4.8, 10, 9.8, 5.2, 9.4, and 6.7 mg/L were obtained for Cr, Zn, Pb, Ni, Fe, Cu, and Cd, respectively, in water samples obtained from stations nearby petrochemical plants. The HMPI index for the most contaminated stations was ten times that of the maximum allowable limit. Given the intense activity of oil, gas, and petrochemical plants in the Persian Gulf, defining safe fishing areas by management practices similar to contamination zoning maps presented in this study can substantially protect the public health from heavy metal contamination.


Assuntos
Metais Pesados , Poluentes Químicos da Água , Animais , Monitoramento Ambiental , Humanos , Metais Pesados/análise , Plantas , Medição de Risco , Poluentes Químicos da Água/análise , Qualidade da Água
14.
Curr Stem Cell Res Ther ; 16(7): 877-887, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33563177

RESUMO

BACKGROUND: Cancer stem cells (CSCs) are a small subpopulation of cells within tumors and play significant roles in tumorigenesis, metastasis, resistance to treatment, and relapse. They are defined by self-renewal and multi-lineage differentiation, and aggressiveness. Epigenetic modifications, including DNA methylation and acetylation, histone modifications, and non-coding. RNAs (ncRNAs), are partly responsible for CSC potentials and are involved in the modification of key components of crucial pathways such as Notch and Wnt signaling in breast cancer. OBJECTIVE: In this review, we present an overview of the pathways and epigenetic events that lead to the transformation of mammary gland stem cells to breast CSCs (BCSCs). Based on the data presented here, important pathways such as TGF-ß/SMAD2 and Wnt/ß-catenin and epigenetic modifications, including histone modifications, DNA methylations, and microRNAs, play important roles in BCSC formation and maintenance. CONCLUSION: Epigenetic events can alter the expression of genes and functional RNAs, resulting in tumor initiation and progression. Thus, a better understanding of epigenetic modifications involved in BCSC maintenance signaling pathways may help to eliminate or suppress BCSCs and overcome cancer by generating more effective and efficient therapeutic agents.


Assuntos
Neoplasias da Mama , Epigênese Genética , Células-Tronco Neoplásicas , Neoplasias da Mama/genética , Feminino , Humanos , Glândulas Mamárias Humanas/citologia , Recidiva Local de Neoplasia , Transdução de Sinais
15.
Cancers (Basel) ; 12(10)2020 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-33019710

RESUMO

The number of genomic aberrations known to be relevant in making therapeutic decisions for non-small cell lung cancer patients has increased in the past decade. Multiple molecular tests are required to reliably establish the presence of these aberrations, which is challenging because available tissue specimens are generally small. To optimize diagnostic testing, we developed a transcriptome-based next-generation sequencing (NGS) assay based on single primed enrichment technology. We interrogated 11 cell lines, two patient-derived frozen biopsies, nine pleural effusion, and 29 formalin-fixed paraffin-embedded (FFPE) samples. All clinical samples were selected based on previously identified mutations at the DNA level in EGFR, KRAS, ALK, PIK3CA, BRAF, AKT1, MET, NRAS, or ROS1 at the DNA level, or fusion genes at the chromosome level, or by aberrant protein expression of ALK, ROS1, RET, and NTRK1. A successful analysis is dependent on the number of unique reads and the RNA quality, as indicated by the DV200 value. In 27 out of 51 samples with >50 K unique reads and a DV200 >30, all 19 single nucleotide variants (SNVs)/small insertions and deletions (INDELs), three MET exon 14 skipping events, and 13 fusion gene transcripts were detected at the RNA level, giving a test accuracy of 100%. In summary, this lung-cancer-specific all-in-one transcriptome-based assay for the simultaneous detection of mutations and fusion genes is highly sensitive.

16.
Recent Pat Anticancer Drug Discov ; 15(4): 329-340, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32990541

RESUMO

BACKGROUND: The Notch signaling pathway has a key role in angiogenesis and Delta - Like Ligand 4 (DLL4) is one of the main ligands of Notch involved in cell proliferation in sprouting vessels. OBJECTIVE: In this study, we aimed to evaluate the expression of DLL4 in primary breast tumors and to examine the effect of melatonin on DLL4 expression in vitro. METHODS: Eighty-five breast tumor and paired adjacent non-tumor tissue samples were collected. Apoptosis assay was performed on breast cancer cells to evaluate melatonin effects. Western blot and quantitative RT-PCR were used to measure DLL4 expression. Then, we investigated the effect of melatonin on the expression of DLL4 in four breast cancer cell lines at RNA and protein levels. We also performed a probabilistic neural network analysis to study genes closely associated with DLL4 expression. RESULTS: Our results showed a significantly higher expression of DLL4 in tumor tissues compared to non-tumor tissues (P = 0.027). Melatonin treatment substantially attenuated DLL4 expression in BT474 and MCF-7 cells, but not in SK-BR-3 and MDA-MB-231 cells. Also, melatonin induced apoptosis in all four cell lines. Network analysis revealed a set of 15 genes that had close association and interaction with DLL4. DLL4 was overexpressed in breast cancer tissues as compared to the non-tumor tissues. CONCLUSION: It can be concluded that melatonin treatment attenuated DLL4 expression only in estrogen- responsive breast cancer cells and is able to induce apoptosis in breast cancer cells.


Assuntos
Proteínas Adaptadoras de Transdução de Sinal/metabolismo , Antineoplásicos/farmacologia , Biomarcadores Tumorais/metabolismo , Neoplasias da Mama/tratamento farmacológico , Proteínas de Ligação ao Cálcio/metabolismo , Estrogênios/metabolismo , Melatonina/farmacologia , Proteínas Adaptadoras de Transdução de Sinal/antagonistas & inibidores , Antioxidantes/farmacologia , Apoptose , Neoplasias da Mama/metabolismo , Neoplasias da Mama/patologia , Proteínas de Ligação ao Cálcio/antagonistas & inibidores , Linhagem Celular Tumoral , Proliferação de Células , Feminino , Humanos , Pessoa de Meia-Idade , Patentes como Assunto , Transdução de Sinais
17.
Biochem Pharmacol ; 178: 114095, 2020 08.
Artigo em Inglês | MEDLINE | ID: mdl-32535106

RESUMO

Several different mechanisms are implicated in the resistance of lung cancer cells to epidermal growth factor receptor-tyrosine kinase inhibitors (EGFR-TKIs), and only few have been functionally investigated. Here, using genetically knocked out EGFR and TKI-resistant lung cancer cells, we show that loss of wild-type EGFR attenuates cell proliferation, migration and 3D-spheroid formation, whereas loss of mutant EGFR or resistance to TKIs reinforces those processes. Consistently, disruption of wild-type EGFR leads to suppression of HER2/HER3, while mutant EGFR ablation or resistance to TKIs increases HER2/HER3 expression, compensating for EGFR loss. Furthermore, HER2/HER3 nuclear translocation mediates overexpression of cyclin D1, leading to tumor cell survival and drug resistance. Cyclin D1/CDK4/6 inhibition resensitizes erlotinib-resistant (ER) cells to erlotinib. Analysis of cyclin D1 expression in patients with non-small cell lung carcinoma (NSCLC) showed that its expression is negatively associated with overall survival and disease-free survival. Our results provide biological and mechanistic insights into targeting EGFR and TKI resistance.


Assuntos
Carcinoma Pulmonar de Células não Pequenas/genética , Ciclina D1/genética , Regulação Neoplásica da Expressão Gênica , Neoplasias Pulmonares/genética , Receptor ErbB-2/genética , Receptor ErbB-3/genética , Antineoplásicos/uso terapêutico , Carcinoma Pulmonar de Células não Pequenas/tratamento farmacológico , Carcinoma Pulmonar de Células não Pequenas/mortalidade , Carcinoma Pulmonar de Células não Pequenas/patologia , Linhagem Celular Tumoral , Movimento Celular/efeitos dos fármacos , Proliferação de Células/efeitos dos fármacos , Ciclina D1/metabolismo , Quinase 4 Dependente de Ciclina/genética , Quinase 4 Dependente de Ciclina/metabolismo , Quinase 6 Dependente de Ciclina/genética , Quinase 6 Dependente de Ciclina/metabolismo , Resistencia a Medicamentos Antineoplásicos/genética , Células Epiteliais/efeitos dos fármacos , Células Epiteliais/metabolismo , Células Epiteliais/patologia , Receptores ErbB/deficiência , Receptores ErbB/genética , Cloridrato de Erlotinib/uso terapêutico , Humanos , Neoplasias Pulmonares/tratamento farmacológico , Neoplasias Pulmonares/mortalidade , Neoplasias Pulmonares/patologia , Inibidores de Proteínas Quinases/uso terapêutico , Receptor ErbB-2/metabolismo , Receptor ErbB-3/metabolismo , Transdução de Sinais , Esferoides Celulares/efeitos dos fármacos , Esferoides Celulares/metabolismo , Esferoides Celulares/patologia , Análise de Sobrevida , Ativação Transcricional
18.
Sci Rep ; 10(1): 8200, 2020 May 18.
Artigo em Inglês | MEDLINE | ID: mdl-32424250

RESUMO

Considering environmental concerns regarding air pollution which is induced by burning fossil fuels to generate electrical power, utilizing solar energy as a green and sustainable energy source is of great interest. This study proposes a novel framework to determine the optimal location for constructing solar photovoltaic (PV) farms. To locate the suitable areas for PV farms, firstly, a fuzzy-based method is utilized to homogenize the input parameters, thereafter, the analytical hierarchy process (AHP) and Dempster-Shafer (DS) methods are independently used. In the AHP method, the proper weight for each input parameter is generated utilizing a pairwise comparison matrix. However, the DS method identifies output in different confident levels. Finally, southeast of Fars province in Iran as a region with high sunny hours in the year is selected, and the applicability of proposed methods is examined. The results show that 32% of the case study is located at high and good suitability classes in the fuzzy_AHP method. However, it is 18.56%, 16.70%, 16.32% according to 95%, 99% and 99.5% confident levels in the fuzzy_DS method, respectively. Comparisons of the fuzzy_AHP and fuzzy_DS methods at 20 points with various solar radiation intensities and the number of dusty days parameters indicate that the fuzzy_DS method can more reliably determine the optimal PV farm locations. Additionally, as the fuzzy_DS method determines the optimal locations with different confident levels, this method can benefit decision-makers to determine the risks associated with selecting a specific site for constructing solar PV farms.

19.
PLoS One ; 15(5): e0232985, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32413049

RESUMO

Receptor tyrosine kinases, such as VEGFR, PDGFR and EGFR, play important roles in renal cancer. In this study, we investigated EGFR knockout as a therapeutic approach in renal cell carcinoma (RCC). We showed that a renal cell carcinoma cell line (RC21) has higher expression of EGFR as compared to other frequently used cell lines such as HEK293, A549, Hela and DLD1. Ablation of EGFR by CRISPR/Cas9 significantly restrained tumor cell growth and activated the MAPK (pERK1/2) pathway. The VEGFR and PDGFR inhibitor, sunitinib, attenuated the expression of MAPK (pERK1/2) and pAKT induced by EGFR loss and further inhibited EGFR-/- cell proliferation. We showed that loss of EGFR eventually leads to resistance to SAHA and cisplatin. Furthermore, EGFR loss induced G2/M phase arrest and resulted in an increased resistance to TNF-related apoptosis-inducing ligand (TRAIL) in renal cell carcinoma. Thus, ablation of overexpressed EGFR by CRISPR/Cas9 alone or in combination with sunitinib may be a new treatment option for renal cell carcinoma.


Assuntos
Sistemas CRISPR-Cas , Carcinoma de Células Renais/terapia , Técnicas de Inativação de Genes/métodos , Neoplasias Renais/terapia , Sunitinibe/uso terapêutico , Células A549 , Antineoplásicos/uso terapêutico , Apoptose/efeitos dos fármacos , Apoptose/genética , Carcinoma de Células Renais/genética , Carcinoma de Células Renais/patologia , Linhagem Celular Tumoral , Proliferação de Células/efeitos dos fármacos , Proliferação de Células/genética , Cisplatino/farmacologia , Terapia Combinada , Resistencia a Medicamentos Antineoplásicos/genética , Receptores ErbB/antagonistas & inibidores , Receptores ErbB/genética , Genes erbB-1 , Células HEK293 , Células HeLa , Humanos , Neoplasias Renais/genética , Neoplasias Renais/patologia , Sistema de Sinalização das MAP Quinases/efeitos dos fármacos , Sistema de Sinalização das MAP Quinases/genética , Modelos Biológicos , Inibidores de Proteínas Quinases/uso terapêutico
20.
Sci Total Environ ; 714: 136762, 2020 Apr 20.
Artigo em Inglês | MEDLINE | ID: mdl-32023782

RESUMO

Lake Arrowhead, an oligotrophic alpine lake in southern California, experienced a drought period from summer 2012 to winter 2018 followed by a season of intense storms in winter 2019 resulting in lake flooding. This study investigates the effects of seasonal variations combined with 3.5 m water level fluctuation from May 2018 to April 2019, on water quality and hydrodynamics of Lake Arrowhead. In-situ measured meteorological data and water quality profiles in five different bays were used to develop and calibrate a three-dimensional lake hydrodynamic model. The mean relative errors between simulated and measured temperature and salinity profiles were 6.1% and 4.2%, respectively. Root mean square errors between the measured and simulated water temperatures were slightly larger during the stratified period. However, no specific pattern was observed in error analysis of salinity simulations. Strong thermal stratification during summer and early-fall resulted in hypoxic hypolimnetic waters with dissolved oxygen (DO) concentrations of <1 mg L-1. Turbulent kinetic energy (TKE) generated by convective motions in the water column due to surface heat loss was typically more than two times greater than the wind-induced mixing energy during the stratification period. The lake experienced an energetic turbulent mixing regime with TKE fluxes >1.5 m-3 s-3, and Lake numbers <0.1 during the winter cooling period, resulting in a complete water column turnover and resuspension of bottom sediments. Entrainment of the hypoxic hypolimnion layers and sediment resuspension resulted in decreased DO and pH in the water column from December 2018 through mid-January 2019. Comparisons of Wedderburn and Lake numbers during different stratification conditions indicated the same trends in the strong stratification period (square of buoyancy frequency >10-4 s-2). However, in other conditions, the Lake number, considering the lake bathymetry and density profile, could better reflect vertical mixing conditions.

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