Carbon sequestration in the bio-edaphic ecosystem of National Highway-27 in Guwahati, Assam, India.

Vehicular pollution in cities is engendering the need to enhance the sequestration of CO2 through bio-edaphic factors, such as trees and soil. Hence, this pioneering study aimed to analyze the interdependencies of the bio-edaphic ecosystem during carbon sequestration on a national highway in Guwahati, Assam, India. To quantify the tree carbon stock, soil physicochemical properties, soil nutrients, bulk density, organic carbon, and soil carbon stock, trees with diameters at breast height (dbh) ≥ 2 cm and soil samples from different depths (0-15 cm, 15-30 cm, and 30-45 cm) were taken from six areas spread over 36 plots of equal size (2 × 10 m) arranged in a zig-zag manner. The studied parameters were compared among the different areas. It was found that the tree and soil carbon stock, along with soil nutrients, were greater in the Garchuk-Lokhra area (sample area-4). A significantly strong correlation was observed between the soil carbon stock and the above and below-ground biomass of trees (AGB, r = 0.865; BGB, r = 0.847), which indicated the co-dependencies of the bio-edaphic ecosystem in accumulating carbon. Peltophorum ferrugineum (Decne.) Benth is recommended for planting because it has emerged as a tolerant species and has the greatest carbon storage potential. The bio-edaphic ecosystem of the national highway is now on a carbon-friendly trajectory that follows the UNFCCC guidelines and the REDD+ (reducing emissions from deforestation and forest degradation) strategy. However further research on carbon budgeting is required.

[Point mutations in the DNA binding domain of p53 contribute to glioma progression and poor prognosis].

TP53 mutations play a significant role in glioma tumorigenesis. When located in in the DNA binding domain, these mutations can perturb p53 protein conformation and its function, often culminating in altered downstream signaling. Here we describe prevalent pattern of TP53 point mutations in a cohort of 40 glioma patients and show their relevance to gliomagenesis. Point mutations in exon 5-9 of TP53 gene were detected by DNA sequencing. Possible influence of identified mutations at the function of p53 was studied computationally and correlated with the survival. Point mutations in TP53 were detected in 10 glioma samples (25%), out of which 70% were from high grade glioma. A total of 19 TP53 point mutations were identified, out of which 42% were found to be in the DNA binding region of p53. Computational analysis predicted 87.5% of these mutations to be "probably damaging". In three patients with tumors possessing point mutations R273H, R248Q, Y163H and R175H and poor survival times, structural analysis revealed the nature of these mutations to be disruptive and associated with high risk for cancer progression. In high grade glioma, recurrent TP53 point mutations may be the key to tumor progression, thus, emphasizing their significance in gliomagenesis.

New Delhi metallo-ß-lactamase and extended spectrum ß-lactamases co-producing isolates are high in community-acquired urinary infections in Assam as detected by a novel multiplex polymerase chain reaction assay.

BACKGROUND: The ability of microorganisms to evade antibiotic pressure is challenging in healthcare as patients have little or no drug treatment options. Detection of the prevalence of antibacterial resistance pattern helps towards improved antibiotic policy and empirical treatment. OBJECTIVES: We carried out antibiogram profiling and documented the prevalence and co-prevalence of New Delhi metallo-ß-lactamase (NDM) and extended spectrum ß-lactamases (ESBL) encoding genes in urinary Escherichia coli and Klebsiella pneumonia isolates. MATERIALS AND METHODS: Antibiotic susceptibilities were tested for 241 isolates of E. coli and K. pneumoniae from urine samples collected from out- and hospitalised patients. Polymerase chain reaction (PCR) was carried out on isolates tested positive for phenotypic production of metallo-ß-lactamase and ESBL. A multiplex PCR assay was designed to detect the genes. RESULTS: Multiplex PCR assay designed had a limit of detection of 10 3 CFU/mL in vitro. NDM detected was significantly higher among K. pneumoniae compared to E. coli (69.2% vs. 18.2%; P = 0.001). Of 17, 14 NDM positive isolates also harboured ESBL genes. The co-production of CTX-M + TEM + NDM (3/9; 33.3% and 5/8; 62.5%) was most common in K. pneumoniae and E. coli, respectively while CTX-M + TEM + SHV + NDM was found in one isolate. Of the 156 phenotypically ESBL producing isolates, CTX-M, TEM and SHV was detected by PCR in 85, 53 and 24 isolates, respectively. CONCLUSION: NDM and ESBL co-producing isolates were both community (64.7%) and hospital (35.29%) acquired among E. coli. Antibiotic resistance can be effectively evaluated by a cost and time effective molecular method, such as the multiplex PCR used in this study, which complement culture and sensitivity tests.

[Molecular analysis of childhood B-acute lymphoblastic leukemia: Identification and prognosis of rare breakpoints].

Acute lymphoblastic leukaemia (ALL) is the most common subtype of childhood cancer. Detection of a specific gene rearrangement allows the identification of prognostically relevant subgroups in childhood B-ALL. There are four common gene rearrangements which are widely studied to see prognostical values (TEL-AML1, BCR-ABL, E2A-PBX1, MLL-AF4) in childhood B-ALL. In this study we show the prevalence of these common gene rearrangements and also explain the way to identify some rare breakpoints which also occur in these gene rearrangements. 97 samples received for diagnosis from paediatric B-ALL patients were included in this study. Qualitative reverse transcriptase PCR was used for detection of the TEL-AML1-t(12;21), E2A-PBX1-t(1;19), BCR-ABL1-t(9;22) and MLL-AF4 t(4;11) fusion transcripts. Unusually sized amplicons were confirmed by FISH and DNA sequencing to confirm atypical breakpoints. Amongst the paediatric B-ALL samples t(12;21), was detected in (∼20%), t(9;22), was detected in (∼8%), t(1;19) was detected in (∼9%) and t(4;11) was detected in 2 cases. t(12;21) with intron 1of the AML1 gene was detected as the most common gene rearrangement in paediatric ALL, whereas one rare form of the TEL-AML1 breakpoint in which TEL is fused with intron 2 of AML1 was also observed. In the t(9;22) breakpoints e13a2, e14a2 and e1a2 were detected as the common breakpoints. Two atypical and rare breakpoint of t(9;22) were detected namely e6a2 and e13a3 in paediatric ALL. TEL-AML1 was found to be the most common translocation in Paediatric B-ALL. Identification of the rare breakpoints through RT-PCR technique requires designing of PCR in such a way that it can detect these rare breakpoints also.

High quality fluorescent cellulose nanofibers from endemic rice husk: isolation and characterization.

Cellulose nanofibers (CNFs) with high crystallinity and purity were isolated from two endemic rice husk varieties using a hydrothermal approach followed by acid-alkali treatments and mechanical disruption. The CNFs isolated had a mean diameter of ∼ 35 nm. The TGA and DTG profiles showed good thermostability of the CNFs. The CNFs also showed a prominent photoluminescence peak at 404 nm with high quantum yield (∼ 58%). This is the first report on the native fluorescence property of nanocellulose in absence of any conjugated fluorescence molecule/dye. The CNFs further demonstrated appreciable hemocompatibility in the hemolysis test, exhibiting its potential for biomedical applications.

Multi locus sequence type comparison of invasive and commensal Haemophilus influenzae isolates from Delhi.

Haemophilus influenzae is a major public health concern in the developing world. The most virulent strain is H. influenzae Type b (Hib). Hib also constitutes a major portion of nasopharyngeal commensal flora in otherwise healthy individuals. Through dendogram based on composite gene sequences of seven multi locus sequence type genes, it was observed that invasive and commensal isolates made two completely separate clusters which are indicative of independent evolution of these two groups of H. influenzae in the Indian subcontinent.

Resection and arthrodesis of the knee joint for giant cell tumours of bone.

PURPOSE: To evaluate functional outcomes and complications following resection and arthrodesis of the knee for giant cell tumours (GCTs) of bone, in comparison to treatment by endoprosthetic replacements reported elsewhere. METHODS: 18 men and 14 women aged 18 to 40 (mean, 28) years underwent resection and arthrodesis of the knee for GCTs of bone involving the distal femur (n=17) and proximal tibia (n=15). After wide resection, 2 struts were fashioned from the harvested fibula/ fibulae and inserted into the medullary canal at the resected ends of the tibia and femur. The corresponding ends of the struts were inserted into peg holes made in the unaffected condyles in a divergent fashion. The knee was arthrodesed in 5 to 10 degrees of flexion, with the limb kept 1 cm short. A 95-degree AO condylar bladeplate (10-12 holes) was fixed at the resected ends, with a minimum of 8 cortices purchase. Cancellous bone grafts were placed transversely along the struts and circumferentially over the host-graft junctions. Outcomes and complications were evaluated and compared with those of endoprosthetic arthroplasty reported elsewhere. RESULTS: Patients were followed up for a mean of 8 (range, 3-12) years. The mean size of the tumours was 10x8x6 cm. All patients achieved arthrodesis and full weight bearing without pain within 6 to 10 (mean, 6) months. No shortening, loss of alignment, loosening, implant breakage ensued. One patient had a deep infection and absorption at the host-graft junction. Another had a stress fracture of the fibular strut after plate removal. Two patients had a transient peroneal nerve palsy. One patient had local recurrence and extensive fungation and underwent amputation. The mean functional score was 26 (87% of the full score), compared to 66 to 85% in endoprosthetic arthroplasty reported elsewhere. CONCLUSION: Arthrodesis is a viable alternative to customised arthroplasty and provides a long-lasting and cost-effective reconstruction for average patients in developing countries.

Anthropometric study of the hip joint in northeastern region population with computed tomography scan.

BACKGROUND: Anthropometric study of the hip joint has important clinical implications and is largely unknown for the northeastern region of India. The purpose of this study is to determine the anatomic variation of the normal hip joint among the people of the northeastern region and to statistically compare them with the available data worldwide. MATERIALS AND METHODS: We evaluated 104 individuals with normal hip joints and of different ethnic backgrounds (Caucasoid and Mongoloids) clinically and by plain x- ray. One topogram of the hip joint, one axial section of the femoral head and femoral condyles of the individual was taken on CT scan. Twelve cases had center edge angle (CE) angle less than 20 degrees (unilateral/bilateral), were considered to be dysplastic and were excluded from the study. Thus the present study includes 92 individuals (184 normal hips, Mongoloids = 45; Caucasoid = 47) between 20-70 years of age. We calculated the mean of the CE angle, acetabular angle, neck shaft angle, acetabular version, femoral neck anteversion, acetabular depth and joint space width in both sexes. RESULTS: The mean parameters observed were as follows: acetabular angle 39.2 degrees, centre edge angle 32.7 degrees, neck shaft angle 139.5 degrees, acetabular version 18.2 degrees, femoral neck anteversion 20.4 degrees, acetabular depth 2.5 cm and joint space width 4.5 mm. CONCLUSION: The parameter and its values in our series shows differences when compared to the other western literatures. The neck shaft angle and the femoral neck anteversion in our individuals was 5-6 degrees more than the western literature. The remaining parameters were less or equal to the western literature.

Calcium phosphate ceramics as bone graft substitutes in filling bone tumor defects.

BACKGROUND: Synthetic bio-inert materials are currently used as an alternative to autogenous bone graft. Calcium hydroxyapatite (HA) and Beta tri-calcium phosphate (beta-TCP), which belong to the calcium phosphate ceramics group, are biocompatible and osteo-conductive. The purpose of this study is to analyse the use of HA and beta-TCP in their ceramic forms as a bone graft substitute in filling bone voids after curettage of benign bone tumors. MATERIALS AND METHODS: Twenty-four patients in the age range of 3.5-55 years (mean 14.3 years) having benign bone tumors with bone defects were filled with bone graft substitute following curettage. In 20 patients bone defects were filled with block/granules of HA ceramic and in four with beta-TCP. Fibular strut graft was packed with HA in four patients. The patients were followed up for an average of 18 months (range 12-36 months). RESULTS: The functional status of the patients at follow-up was evaluated and compared with preoperative functional status. Early incorporation of graft substitutes became evident radiologically between 6 and 10 weeks (Stage I). Complete incorporation (Stage III) was observed in an average of nine months (6-18 months). Clinical healing was observed before radiological healing. The average time taken to return to preoperative function was 14 weeks. There was no recurrence of lesion or growth retardation. CONCLUSION: Calcium hydroxyapatite and beta-TCP are excellent bone graft substitutes for autogenous bone graft in filling voids after curettage of benign bone tumors.

Anterior compartment pressure measurement in closed fractures of leg.

BACKGROUND: Compartment syndrome is a potentially devastating condition. Increased intracompartmental pressure has been incriminated as the primary pathogenic factor in compartment syndrome. The purpose of this prospective study was to monitor the anterior compartmental pressure and differential pressure to minimize the incidence of acute compartment syndrome. MATERIALS AND METHODS: Seventy-five consecutive cases of closed fractures of leg presenting within six hours of injury were taken for measurement of anterior compartment pressure at the level of fracture and at 5 cm and 10 cm away from the fracture site, using the Whitesides' infusion technique. A differential pressure of less than 30 mm Hg was taken as the criterion for diagnosis of compartment syndrome. RESULTS: Two patients (2.67%) developed acute compartment syndrome. The mean anterior compartment pressures were highest at the level of the fracture and went on decreasing as we went away from the fracture site, which was found to be statistically significant (P < 0.001). CONCLUSION: Compartment pressure measurement is the most reliable and objective method for early diagnosis of compartment syndrome. Whitesides' infusion technique is a relatively easy and inexpensive method to come to a diagnosis of compartment syndrome in a developing country like India. Differential pressure is more reliable than absolute pressure in predicting the development of an impending compartment syndrome.

A clinicopathological study of the pre-malignant conditions of oral cavity.

The pre-malignant conditions of the oral cavity are those which has got a potentiality to turn malignant in its due course if left untreated. It was only in 1967 when an international reference center for the study of Oral Pre-cancerous Lesion was established by the World Health Organization. The main importance was given to Leukoplakia. The conditions considered as premalignant are Leukoplakia, Lichen planus, Oral submucous fibrosis and erythroplakia. There lesions has got a very close association with the local habits practised by the people. So in this paper this point has been highlighted.The study has included the patient within a time span of one year from 5th April, '94 to 4th April '95. Though the number of the patients is not much but we find it sufficient enough to bring awareness on these potentially dangerous lesion thereby preventing oral cancers.