A comprehensive molecular genetic analysis of keratoconus patients from assam, a northeastern state of India.

INTRODUCTION: Keratoconus (KC, OMIM: 148300) is a progressive corneal ectatic disorder characterized by thinning and protrusion of cornea resulting in visual decrement. MATERIALS AND METHODS: In the current study, we recruited a total of 50 KC patients and 100 case-controls domiciles of Assam, based on preset inclusion and exclusion criteria. All the important and relevant signs and symptoms were recorded. Amsler-Krumeich's (AK) classification was followed to grade KC corneas. We screened for the novel as well as reported sequence variations in five candidate genes namely Lysyl oxidase (LOX), Visual system homeobox 1 (VSX1), MicroRNA 184 (MIR184), Superoxide dismutase 1 (SOD1), and exons 4 and 12 of Transforming growth factor beta-induced (TGFß-I). RESULTS: We report a novel double variant p.(Pro32Arg) and p.(Gln67Glu) in the LOX gene in a sporadic male patient with Grade I (OD) and Grade II (OS) of KC. A recurrent variant p.(His244Arg) in the VSX1 gene was also observed in a sporadic female patient with Grade I of KC in both eyes. These variants were absent in 100 unrelated ethnically matched case controls. DISCUSSION: Ours is the first study on molecular genetic analysis of Keratoconus patients from Assam. The novel variants p.(Pro32Arg) and p.(Gln67Glu) observed further expand the mutational spectrum of the LOX gene associated with KC. We are also the first group to report the recurrent p.(His244Arg) variant in the VSX1 gene from India. The observed variant p.(His244Arg) in the VSX1 gene could be the result of a founder effect and may be investigated further.

Habitat monitoring and conservation prioritization of Western Hoolock Gibbon in upper Brahmaputra Valley, Assam, India.

The present study aimed at predicting the potential habitat of Western Hoolock Gibbon (Hoolock hoolock) in the upper Brahmaputra River Valley, Assam, India, and identifying priority conservation areas for the species, taking canopy cover into account. We used the maximum entropy algorithm for the prediction of the potential habitat of the gibbon using its current distribution with 19 environmental parameters as primary predictors. Spatio-temporal analyses of the habitat were carried out using satellite-based remote sensing and GIS techniques for two decades (1998-2018) along with Terra Modis Vegetation Continuous Field product to examine land use land cover (LULC), habitat fragmentation, Normalized Difference Vegetation Index (NDVI) and tree cover percentage of the study area. To identify the conservation priority area, we applied a cost-effective decision-making analysis using systematic conservation prioritization in R programming. The model predicted an area of 6025 km2 under high potential habitat, a major part of which was found to overlap with dense forest (80%), followed by moderately open forest (74%) and open forest (66%). The LULC change matrix showed a reduction of forest area in the predicted high potential habitat during the study period, while agricultural class showed an increasing trend. The fragmentation analysis indicated that the number of patches and patch density increased from 2008 to 2018 in the 'very dense' and 'dense' canopy regions of the gibbon habitat. Based on the conservation priority analysis, a 640 km2 area has been proposed to conserve a minimum of 10% of gibbon habitat. The current analysis revealed that in the upper Brahmaputra Valley most areas under dense forest and dense canopy have remained intact over the last two decades, at least within the high potential habitat zone of gibbons independent of the degree of area change in forest, agriculture and plantation.

Modified top-down approach for synthesis of molybdenum oxide quantum dots: sonication induced chemical etching of thin films.

A simple and modified top-down approach to synthesize molybdenum oxide (MoO x : x = 2, 3) quantum dots (QDs) is proposed in this study. This modified approach involves the conversion of a bulk powder material into thin films followed by a sonication induced chemical etching process for synthesising QDs. X-Ray Diffraction (XRD) is used for crystal structural characterization of MoO x thin films. The crystal structure properties of the MoO x QDs are analysed by High Resolution Transmission Electron Microscopy (HRTEM) images and corresponding Selected Area Electron Diffraction (SAED) patterns. The optical band gap is estimated by Tauc's plot from UV-Vis-NIR absorption spectra. The excitation dependent photoluminescence (PL) emission of MoO x QDs as a function of acid concentration is investigated. The growth mechanism of QDs in different crystalline phases as a function of acid concentration is also exemplified in this work. The micro-Raman and Fourier Transform of Infrared (FTIR) spectra are recorded to analyse the vibrational spectrum of the molybdenum-oxygen (Mo-O) bonds in the MoO x QDs.

Inter-specific gene flow dynamics during the Pleistocene-dated speciation of forest-dependent mosquitoes in Southeast Asia.

Tropical forests have undergone repeated fragmentation and expansion during Pleistocene glacial and interglacial periods, respectively. The effects of this repeated forest fragmentation in driving vicariance in tropical taxa have been well studied. However, relatively little is known about how often this process results in allopatric speciation, since it may be inhibited by recurrent gene flow during repeated secondary contact, or to what extent Pleistocene-dated speciation results from ecological specialization in the face of gene flow. Here, divergence times and gene flow between three closely-related mosquito species of the Anopheles dirus species complex endemic to the forests of Southeast Asia, are inferred using coalescent based Bayesian analysis. An Isolation with Migration model is applied to sequences of two mitochondrial and three nuclear genes, and 11 microsatellites. The divergence of An. scanloni has occurred despite unidirectional nuclear gene flow from this species into An. dirus. The inferred asymmetric gene flow may result from the unique evolutionary adaptation of An. scanloni to limestone karst habitat, and therefore the fitness advantage of this species over An. dirus in regions of sympatry. Mitochondrial introgression has led to the complete replacement of An. dirus haplotypes with those of An. baimaii through a recent (approximately 62 kya) selective sweep. Speciation of An. baimaii and An. dirus is inferred to have involved allopatric divergence throughout much of the Pleistocene. Secondary contact and bidirectional gene flow has occurred only within the last 100 000 years, by which time the process of allopatric speciation seems to have been largely completed.