Versatile Tetrablock Copolymer Scaffold for Hierarchical Colloidal Nanoparticle Assemblies: Synthesis, Characterization, and Molecular Dynamics Simulation.

A unique combination of molecular dynamics (MD) simulation and detailed size exclusion chromatography-multiangle light scattering (SEC-MALS) analysis is used to provide important a priori insights into the solution self-assembly of a well-defined and symmetric tetrablock copolymer with two acrylic acid (AA) outer blocks, two polystyrene (PS) inner blocks, and a trithiocarbonate (TTC) central group, prepared by reversible addition-fragmentation chain transfer (RAFT) polymerization. SEC-MALS experiments show that the copolymer forms aggregates in both tetrahydrofuran and N,N-dimethylformamide (DMF), even in the presence of different salts, but not in 1,4-dioxane (dioxane). Combined with MD simulations, these results indicate that the AA units are the main cause of aggregation through intermolecular hydrogen bonding, with additional stabilization by the central TTC. The block copolymer chains self-assemble in dioxane by adding cadmium acetate, originating flowerlike inverse micelles with a cadmium acrylate core and the TTC groups in the outer surface of the PS corona. The micelles were used as nanoreactors in the templated synthesis of a single cadmium selenide (CdSe) quantum dot (QD) in the core of each micelle, whereas the shell TTC groups can be converted into thiol functions for further use of these units in hierarchical nanostructures. Only in dioxane where simulations and SEC-MALS suggest an absence of copolymer aggregates prior to cadmium acetate addition do well-dispersed and highly luminescent CdSe QDs form by templated synthesis. These results provide valuable insights into the self-assembly of RAFT copolymers in different solvent systems as it relates to the preparation of emissive QDs with polymer-spaced thiol functionality for binding to gold nanostructures.

Molecular basis of carbon dioxide transport in polycarbonate membranes.

Gas transport of carbon dioxide in poly[bisphenol A carbonate-co-4,4'-(3,3,5-trimethylcyclohexylidene)diphenol carbonate] films over a wide range of pressure is described. The interpretation of the experimental results in terms of the dual mode model allowed the evaluation of the parameters of the model that govern the gas permeation process. The value of the diffusion coefficient obtained for carbon dioxide at zero concentration was 2.4 x 10(-8) cm(2) s(-1), at 303 K. This parameter was also measured by using pulsed field gradient NMR finding that its value reaches a nearly constant value of (2.7 +/- 0.9) x 10(-8) cm(2) s(-1), at 298 K, for diffusion times greater than 20 ms. Both the diffusion and solubility coefficients were also computed by using simulation methods based on the transition states theory and the Widom method, respectively. The value obtained for the diffusion coefficient was 1.8 x 10(-8) cm(2) s(-1), at 303 K, which compares very favorably with the experimental measurements. The drop of the simulated solubility coefficient with increasing pressure is sharper than that of the experimental one, at low pressures, and similar, at high pressures.

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

The BioMoby project was initiated in 2001 from within the model organism database community. It aimed to standardize methodologies to facilitate information exchange and access to analytical resources, using a consensus driven approach. Six years later, the BioMoby development community is pleased to announce the release of the 1.0 version of the interoperability framework, registry Application Programming Interface and supporting Perl and Java code-bases. Together, these provide interoperable access to over 1400 bioinformatics resources worldwide through the BioMoby platform, and this number continues to grow. Here we highlight and discuss the features of BioMoby that make it distinct from other Semantic Web Service and interoperability initiatives, and that have been instrumental to its deployment and use by a wide community of bioinformatics service providers. The standard, client software, and supporting code libraries are all freely available at http://www.biomoby.org/.

Determination of molecular parameters of hydroxyethyl and hydroxypropyl celluloses by chromatography with dual detection.

Hydroxyethylcellulose (HEC) and hydroxypropylcellulose (HPC) were studied by means of size exclusion chromatography with dual detection, i.e. employing simultaneously a refractive index (concentration sensitive) and a multiangle light scattering (molecular weight sensitive) detectors. The eluent was water and water solutions containing different concentrations of ionic salts. Molecular weight distributions and averages, coefficients of the scaling law of molecular dimensions and unperturbed dimensions were thus obtained from a single polydisperse sample of each polymer. Measurements were performed at 25 degrees C and the anomalous chromatographic behaviour, due to a combination of ion and size exclusion mechanisms, found when using pure water as eluent is transformed into a size exclusion mechanism by the addition of ionic salts. However, the two polymers behave on a different way in presence of salts. Thus, HEC, which is of low degree of substitution (DS), is close to theta conditions in the aqueous salt solutions (i.e. the q exponent of the scaling law has a value close to 0.5), whereas in the case of HPC the addition of salt improves the quality of the solvent up to a value of q around 0.6. Unperturbed dimensions are also calculated for both celluloses.

Unperturbed dimensions of Carrageenans in different salt solutions.

Commercial samples of kappa-, iota-, and lambda-carrageenans were studied by means of Size Exclusion Chromatography with dual detection, i.e. employing a Refractive Index (concentration sensitive) and Multiangle Light Scattering (size sensitive) detectors. The eluent was water containing 0.1 M concentration of different ionic salts, namely LiCl, NaCl, KCl and NaI, with the exception of kappa-carrageenan that aggregates in presence of KCl. Molecular weight distributions and averages, coefficients of the scaling law of molecular dimensions and unperturbed dimensions were thus obtained from a single polydisperse sample of each polymer. Measurements were performed at 25 degrees C and all the systems were above theta conditions with values of the q exponent of the scaling law ranging from 0.51 to 0.59. Extrapolation to unperturbed conditions provides values of the characteristic ratio C(N)=56+/-1 and 40+/-5 respectively for lambda- and iota-carrageenans regardless of the ionic salt employed. However, kappa-carrageenan gives C(N)=31, 35 and 59, respectively, in presence of LiCl, NaCl and NaI, which clearly indicates that this polymer behaves on a different way in presence of NaI than with the other two salts. A tentative explanation of this difference is provided.

Combination of SEC/MALS experimental procedures and theoretical analysis for studying the solution properties of macromolecules.

Size-exclusion chromatography (SEC) with dual detection, i.e., employing refractive index (RI) and multiangle light-scattering (MALS) detectors, has been applied to study the solution properties of two very different polymer-solvent systems at 25 degrees C: poly(N-vinylcarbazole) (PVCz) in an organic solvent THF that is a very good solvent and a system under theta conditions that is formed by polyvinylpyrrolidone (PVP) in water containing a 0.1 M concentration of NaNO(3). In both cases, the analysis of a single highly polydisperse sample obtained by free radical polymerization is enough for obtaining molecular weight and radius of gyration calibration curves, molecular weight distributions (MWD) (and thus, molecular weight averages), molecular dimensions, scaling laws coefficients and unperturbed dimensions. Extrapolation to theta conditions produces values of the characteristic ratio of the unperturbed dimensions C(n)=(o)/nl(2)=15.9 and 14, respectively, for PVCz and PVP. Unperturbed dimensions are also theoretically calculated with different models such as Kuhn equivalent chain, worm-like chain and rotational isomeric states model. Conformational parameters required for this last model were taken from the literature in the case of PVCz; however, they are calculated by molecular dynamics simulations in the case of PVP. Theoretical values obtained with the RIS model are in good agreement with the experimental results.