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1.
Sci Rep ; 14(1): 14084, 2024 Jun 18.
Artigo em Inglês | MEDLINE | ID: mdl-38890362

RESUMO

We present a novel internet of things (IoT) sensing platform that uses helical propagation paths of ultrasonic guided waves (UGWs) for structural health monitoring. This wireless sensor network comprises multiple identical sensor units that communicate with a host PC. The units have dedicated hardware to both generate and receive ultrasonic signals, as well as RF signals for use in triggering the sensors. The system was developed for monitoring and sensing pipelines and similar structures in real-time to facilitate interactive sensing. For accurate sensing with a limited number of arbitrarily scattered sensors, we obtain information from all sensor pairs and analyze helical propagation paths in addition to the commonly used shortest paths. UGWs can propagate long distances along the walls of pipelines, and their propagation velocity depends directly on the thickness of the waveguide, and is affected by energy leakage and mass loading. In this paper, we evaluated the network by utilizing it to detect fouling. The network could be adapted for further ultrasonic measurement tasks, e.g., measuring wall thicknesses or monitoring defects with pulse-echo methods.

2.
Sci Rep ; 13(1): 6646, 2023 04 24.
Artigo em Inglês | MEDLINE | ID: mdl-37095138

RESUMO

Bioactive glass (BAG) is a bone substitute that can be used in orthopaedic surgery. Following implantation, the BAG is expected to be replaced by bone via bone growth and gradual degradation of the BAG. However, the hydroxyapatite mineral forming on BAG resembles bone mineral, not providing sufficient contrast to distinguish the two in X-ray images. In this study, we co-registered coded-excitation scanning acoustic microscopy (CESAM), scanning white light interferometry (SWLI), and scanning electron microscopy with elemental analysis (Energy Dispersive X-ray Spectroscopy) (SEM-EDX) to investigate the bone growth and BAG reactions on a micron scale in a rabbit bone ex vivo. The acoustic impedance map recorded by the CESAM provides high elasticity-associated contrast to study materials and their combinations, while simultaneously producing a topography map of the sample. The acoustic impedance map correlated with the elemental analysis from SEM-EDX. SWLI also produces a topography map, but with higher resolution than CESAM. The two topography maps (CESAM and SWLI) were in good agreement. Furthermore, using information from both maps simultaneously produced by the CESAM (acoustic impedance and topography) allowed determining regions-of-interest related to bone formation around the BAG with greater ease than from either map alone. CESAM is therefore a promising tool for evaluating the degradation of bone substitutes and the bone healing process ex vivo.


Assuntos
Substitutos Ósseos , Microscopia Acústica , Animais , Coelhos , Substitutos Ósseos/química , Vidro/química , Osteogênese , Interferometria , Microscopia Eletrônica de Varredura
3.
Ultrason Sonochem ; 85: 105970, 2022 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-35367736

RESUMO

Lipid-based materials, such as substitutes for saturated fats (oleogels) structurally modified with ultrasonic standing waves (USW), have been developed by our group. To enable their potential application in food products, pharmaceuticals, and cosmetics, practical and economical production methods are needed. Here, we report scale-up of our procedure of structurally modifying oleogels via the use of USW by a factor of 200 compared to our previous microfluidic chamber. To this end, we compared three different USW chamber prototypes through finite element simulations (FEM) and experimental work. Imaging of the internal structure of USW-treated oleogels was used as feedback for successful development of chambers, i.e., the formation of band-like structures was the guiding factor in chamber development. We then studied the bulk mechanical properties by a uniaxial compression test of the sonicated oleogels obtained with the most promising USW chamber, and sampled local mechanical properties using scanning acoustic microscopy. The results were interpreted using a hyperelastic foam model. The stability of the sonicated oleogels was compared to control samples using automated image analysis oil-release tests. This work enabled the effective mechanical-structural manipulation of oleogels in volumes of 10-100 mL, thus paving the way for USW treatments of large-scale lipid-based materials.


Assuntos
Compostos Orgânicos , Ultrassom , Ácidos Graxos/análise , Compostos Orgânicos/química , Ondas Ultrassônicas
4.
Ultrason Sonochem ; 79: 105798, 2021 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-34662805

RESUMO

Pipe fouling is a challenging problem in many industrial applications. Current cleaning techniques require halting the production during the cleaning phase and the existing methods are unable to do targeted cleaning, even though fouling is often localized to certain areas inside the pipeline. To address this issue, we use FEM-simulated, time-reversed signals to focus ultrasound power onto a pre-determined location: a fouled pipe residing inside a Plexiglas container. Ultrasound cleaning with similar acoustic power was compared to the time-reversal enhanced method in terms of cleaning efficiency. The cleaning efficiency was determined by measuring how much fouling, by mass, both protocols removed from the surface of a Plexiglas pipe, using similar input electric power and equal cleaning time. Our results indicate that the proposed time-reversal-based technique removes three times more fouling than the standard ultrasound cleaning without focusing. The study extends our previous paper on FEM-based time-reversal focusing [1].

5.
Rev Sci Instrum ; 92(7): 074901, 2021 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-34340418

RESUMO

Scanning acoustic microscopy (SAM) finds use across many disciplines, e.g., biology, industrial quality control, and materials science, thanks to its unique ability to quantify mechanical sample properties combined with its high resolution. However, such imaging is often slow, especially if averaging is necessary. We present a Coded Excitation Scanning Acoustic Microscope (CESAM) that employs coded signals and show that it produces images of higher signal-to-noise ratios (SNRs) than the classical SAM in a comparable measurement time. The CESAM employs coded signals instead of the short bursts used in traditional SAMs, and we employ both linear and non-linear frequency modulation. Our results show that compared to the SAM approach, this modulation increases the SNR by 16.3 dB (from 39.9 to 56.2 dB) and reduces the echo duration by 26.7% when we employ a linear chirp to the transducer with a nominal bandwidth of 130-370 MHz. Driving the transducer with a broader bandwidth signal using non-linear chirps (100-450 MHz), we obtained a SNR increase of 10.3 dB and a reduced echo duration of 70.5%. The shorter echo duration increases z-resolution, whereas the lateral resolution remains limited by the wavelength. Finally, we show that by using these coded signals, one can obtain enhanced image quality relative to the standard actuation of the same measurement time. Our results have potential to invigorate the field of acoustic microscopy, especially with samples where the enhanced SNR and/or contrast-to-noise ratio is crucial for image quality.


Assuntos
Microscopia Acústica , Transdutores , Acústica , Razão Sinal-Ruído , Ultrassonografia
6.
MethodsX ; 8: 101447, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34434858

RESUMO

We present an automated method to determine oil release from lipid-based materials. Oil-release tests can provide information regarding the ability to retain oil within the structuring network of lipid-based materials. This test provides a first insight into the stability of these materials and their possible applications in food, cosmetic, and pharmaceutical products. The method presented features a simple setup comprising a camera that automatically captures images of the evolution of the oil stain released from lipid-based materials placed on a filter paper. Image postprocessing is performed with two custom-made scripts developed for the freeware application ImageJ. The scripts allow direct calculation of the oil-stain area from all images stored in a folder returning as output numerical values in a table. This method was shown to be:•inexpensive, as the employed tools and equipment are available in most laboratories both in academia and industry,•self-running, as the method automatically captures images at predefined time intervals for a certain time span,•practical, as manual-image analysis is unnecessary (200 images can be automatically analyzed in 3 min).

7.
Sci Rep ; 11(1): 15191, 2021 07 26.
Artigo em Inglês | MEDLINE | ID: mdl-34312423

RESUMO

The primary goal of this study is to localize a defect (cavity) in a curved geometry. Curved topologies exhibit multiple resonances and the presence of hotspots for acoustic waves. Launching acoustic waves along a specific direction e.g. by means of an extended laser source reduces the complexity of the scattering problem. We performed experiments to demonstrate the use of a laser line source and verified the experimental results in FEM simulations. In both cases, we could locate and determine the size of a pit in a steel hemisphere which allowed us to visualize the defect on a 3D model of the sample. Such an approach could benefit patients by enabling contactless inspection of acetabular cups.

8.
Sci Rep ; 10(1): 14448, 2020 09 02.
Artigo em Inglês | MEDLINE | ID: mdl-32879336

RESUMO

Oleogels are lipid-based soft materials composed of large fractions of oil (> 85%) developed as saturated and hydrogenated fat substitutes to reduce cardiovascular diseases caused by obesity. Promising oleogels are unstable during storage, and to improve their stability careful control of the crystalline network is necessary. However, this is unattainable with state-of-the-art technologies. We employ ultrasonic standing wave (USSW) fields to modify oleogel structure. During crystallization, the growing crystals move towards the US-SW nodal planes. Homogeneous, dense bands of microcrystals form independently of oleogelator type, concentration, and cooling rate. The thickness of these bands is proportional to the USSW wavelength. These new structures act as physical barriers in reducing the migration kinetics of a liposoluble colorant compared to statically crystallized oleogels. These results may extend beyond oleogels to potentially be used wherever careful control of the crystallization process and final structure of a system is needed, such as in the cosmetics, pharmaceutical, chemical, and food industries.

9.
PLoS One ; 15(2): e0227488, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32012155

RESUMO

People suffering from glaucoma often endure high intra-ocular pressure (IOP). Methods for determining IOP either contact the eye or are unpleasant to some patients. There is therefore a need for a rapid and patient friendly non-contacting method to determine IOP. To address this need, we developed a tonometer prototype that employs spark-gap induced shock waves and a laser Doppler vibrometer (LDV) that reads the amplitude of membrane waves. The IOP was first identified from the membrane wave propagation velocity first in a custom-made ocular phantom and was then verified in ex vivo porcine eyes. The time-of-flight (TOF) of the membrane wave travelling on a hemispherical membrane was compared to reference IOP values in the sample obtained with an iCare TA01 tonometer. The shock front was characterized by high speed photography. Within one eye, the method achieved an agreement of 5 mmHg (1.96 standard deviation between the shock wave tonometer and the commercial manometer) and high method-to-method association (Pearson correlation, R2 = 0.98). The results indicate that the presented method could potentially be developed into a non-contacting technique for measuring IOP in vivo.


Assuntos
Glaucoma/diagnóstico , Fluxometria por Laser-Doppler/métodos , Hipertensão Ocular/diagnóstico , Tonometria Ocular/métodos , Animais , Olho/diagnóstico por imagem , Olho/fisiopatologia , Glaucoma/fisiopatologia , Humanos , Pressão Intraocular/fisiologia , Hipertensão Ocular/fisiopatologia , Fotografação , Estudos Prospectivos , Suínos
10.
Sci Rep ; 9(1): 15937, 2019 11 04.
Artigo em Inglês | MEDLINE | ID: mdl-31685841

RESUMO

Localized delivery of drugs into an osteoarthritic cartilaginous lesion does not yet exist, which limits pharmaceutical management of osteoarthritis (OA). High-intensity focused ultrasound (HIFU) provides a means to actuate matter from a distance in a non-destructive way. In this study, we aimed to deliver methylene blue locally into bovine articular cartilage in vitro. HIFU-treated samples (n = 10) were immersed in a methylene blue (MB) solution during sonication (f = 2.16 MHz, peak-positive-pressure = 3.5 MPa, mechanical index = 1.8, pulse repetition frequency = 3.0 kHz, cycles per burst: 50, duty cycle: 7%). Adjacent control 1 tissue (n = 10) was first pre-treated with HIFU followed by immersion into MB; adjacent control 2 tissue (n = 10) was immersed in MB without ultrasound exposure. The MB content was higher (p < 0.05) in HIFU-treated samples all the way to a depth of 600 µm from AC surface when compared to controls. Chondrocyte viability and RNA expression levels associated with cartilage degeneration were not different in HIFU-treated samples when compared to controls (p > 0.05). To conclude, HIFU delivers molecules into articular cartilage without major short-term concerns about safety. The method is a candidate for a future approach for managing OA.


Assuntos
Cartilagem Articular/metabolismo , Ablação por Ultrassom Focalizado de Alta Intensidade , Animais , Cartilagem Articular/química , Bovinos , Sobrevivência Celular/efeitos dos fármacos , Condrócitos/citologia , Condrócitos/metabolismo , Metaloproteinases da Matriz/genética , Metaloproteinases da Matriz/metabolismo , Azul de Metileno/química , Azul de Metileno/metabolismo , Azul de Metileno/farmacologia , Osteoartrite/metabolismo , Osteoartrite/patologia , Osteoartrite/veterinária , Fator de Crescimento Transformador beta/genética , Fator de Crescimento Transformador beta/metabolismo
11.
Pharmaceutics ; 11(10)2019 Sep 26.
Artigo em Inglês | MEDLINE | ID: mdl-31561640

RESUMO

We investigated nozzleless ultrasound-enhanced electrospinning (USES) as means to generate nanofibrous drug delivery systems (DDSs) for pharmaceutical and biomedical applications. Traditional electrospinning (TES) equipped with a conventional spinneret was used as a reference method. High-molecular polyethylene oxide (PEO) and chitosan were used as carrier polymers and theophylline anhydrate as a water-soluble model drug. The nanofibers were electrospun with the diluted mixture (7:3) of aqueous acetic acid (90% v/v) and formic acid solution (90% v/v) (with a total solid content of 3% w/v). The fiber diameter and morphology of the nanofibrous DDSs were modulated by varying ultrasonic parameters in the USES process (i.e., frequency, pulse repetition frequency and cycles per pulse). We found that the USES technology produced nanofibers with higher fiber diameter (402 ± 127 nm) than TES (77 ± 21 nm). An increase of a burst count in USES increased the fiber diameter (555 ± 265 nm) and the variation in fiber size. The slight-to-moderate changes in a solid state (crystallinity) were detected when compared the nanofibers generated by TES and USES. In conclusion, USES provides a promising alternative for aqueous-based fabrication of nanofibrous DDSs for pharmaceutical and biomedical applications.

12.
J Vis Exp ; (149)2019 07 01.
Artigo em Inglês | MEDLINE | ID: mdl-31305514

RESUMO

Theoretical, numerical, and experimental methods are presented for multiple scattering of light in macroscopic discrete random media of densely-packed microscopic particles. The theoretical and numerical methods constitute a framework of Radiative Transfer with Reciprocal Transactions (R2T2). The R2T2 framework entails Monte Carlo order-of-scattering tracing of interactions in the frequency space, assuming that the fundamental scatterers and absorbers are wavelength-scale volume elements composed of large numbers of randomly distributed particles. The discrete random media are fully packed with the volume elements. For spherical and nonspherical particles, the interactions within the volume elements are computed exactly using the Superposition T-Matrix Method (STMM) and the Volume Integral Equation Method (VIEM), respectively. For both particle types, the interactions between different volume elements are computed exactly using the STMM. As the tracing takes place within the discrete random media, incoherent electromagnetic fields are utilized, that is, the coherent field of the volume elements is removed from the interactions. The experimental methods are based on acoustic levitation of the samples for non-contact, non-destructive scattering measurements. The levitation entails full ultrasonic control of the sample position and orientation, that is, six degrees of freedom. The light source is a laser-driven white-light source with a monochromator and polarizer. The detector is a mini-photomultiplier tube on a rotating wheel, equipped with polarizers. The R2T2 is validated using measurements for a mm-scale spherical sample of densely-packed spherical silica particles. After validation, the methods are applied to interpret astronomical observations for asteroid (4) Vesta and comet 67P/Churyumov-Gerasimenko (Figure 1) recently visited by the NASA Dawn mission and the ESA Rosetta mission, respectively.


Assuntos
Absorção de Radiação , Luz , Planetas , Espalhamento de Radiação , Campos Eletromagnéticos , Método de Monte Carlo , Refratometria , Dióxido de Silício/química , Voo Espacial
13.
Sci Rep ; 9(1): 5189, 2019 Mar 26.
Artigo em Inglês | MEDLINE | ID: mdl-30914658

RESUMO

Studies in optics and acoustics have employed metamaterial lenses to achieve sub-wavelength localization, e.g. a recently introduced concept called 'acoustojet' which in simulations localizes acoustic energy to a spot smaller than λ/2. However previous experimental results on the acoustojet have barely reached λ/2-wide localization. Here we show, by simulations and experiments, that a sub-λ/2 wide localization can be achieved by translating the concept of a photonic jet into the acoustic realm. We performed nano- to macroscale molecular dynamics (MD) and finite element method (FEM) simulations as well as macroscale experiments. We demonstrated that by choosing a suitable size cylindrical lens, and by selecting the speed-of-sound ratio between the lens material(s) and the surrounding medium, an acoustic jet ('acoustic sheet') is formed with a full width at half maximum (FWHM) less than λ/2. The results show, that the acoustojet approach can be experimentally realized with easy-to-manufacture acoustic lenses at the macroscale. MD simulations demonstrate that the concept can be extended to coherent phonons at nanoscale. Finally, our FEM simulations identify some micrometer size structures that could be realized in practice. Our results may contribute to starting a new era of super resolution acoustic imaging: We foresee that jet generating constructs can be readily manufactured, since suitable material combinations can be found from nanoscale to macroscale. Tight focusing of mechanical energy is highly desirable in e.g. electronics, materials science, medicine, biosciences, and energy harvesting.

14.
Sci Rep ; 8(1): 4437, 2018 03 13.
Artigo em Inglês | MEDLINE | ID: mdl-29535342

RESUMO

Electrospinning is commonly used to produce polymeric nanofibers. Potential applications for such fibers include novel drug delivery systems, tissue engineering scaffolds, and filters. Electrospinning, however, has shortcomings such as needle clogging and limited ability to control the fiber-properties in a non-chemical manner. This study reports on an orifice-less technique that employs high-intensity focused ultrasound, i.e. ultrasound-enhanced electrospinning. Ultrasound bursts were used to generate a liquid protrusion with a Taylor cone from the surface of a polymer solution of polyethylene oxide. When the polymer was charged with a high negative voltage, nanofibers jetted off from the tip of the protrusion landed on an electrically grounded target held at a constant distance from the tip. Controlling the ultrasound characteristics permitted physical modification of the nanofiber topography at will without using supplemental chemical intervention. Possible applications of tailor-made fibers generated by ultrasound-enhanced electrospinning include pharmaceutical controlled-release applications and biomedical scaffolds with spatial gradients in fiber thickness and mechanical properties.

15.
Sci Rep ; 7(1): 3991, 2017 06 21.
Artigo em Inglês | MEDLINE | ID: mdl-28638116

RESUMO

Research is ongoing to develop drug therapies to manage osteoarthritis (OA) and articular cartilage (AC) injuries. However, means to deliver drug to localized AC lesions are highly limited and not clinically available. This study investigates the capability of laser ultrasound (laser-induced plasma sound source) to deliver agents (methylene blue, MB, in PBS) into bovine AC. Treatment samples (n = 10) were immersed in MB solution simultaneously with LU exposure, while adjacent control 1 tissue (n = 10) was pre-treated with LU followed by immersion in MB and adjacent control 2 tissue (n = 10) was only immersed in MB. AC exposed (n = 22) or not exposed (n = 27) to LU were characterized for anomalies in structure, composition, viability or RNA expression. Optically detected MB content was significantly (p < 0.01) higher in treatment samples up to a depth of 500 µm from AC surface as compared to controls. No major unwanted short-term effects on AC structure, proteoglycan or collagen contents, chondrocyte viability or RNA expression levels were detected. In conclusion, LU can deliver agents into AC without major short-term concerns on safety. LU could reveal new strategies for the development of localized drug therapies in AC.


Assuntos
Cartilagem Articular/efeitos da radiação , Lasers , Osteoartrite/terapia , Animais , Cartilagem Articular/metabolismo , Cartilagem Articular/patologia , Bovinos , Sistemas de Liberação de Medicamentos , Regulação da Expressão Gênica/efeitos da radiação , Humanos , Azul de Metileno/química , Azul de Metileno/farmacologia , Osteoartrite/genética , Osteoartrite/patologia , RNA/efeitos da radiação , Ultrassonografia
16.
Sci Rep ; 5: 13596, 2015 Sep 04.
Artigo em Inglês | MEDLINE | ID: mdl-26337364

RESUMO

Acoustic levitation provides potential to characterize and manipulate material such as solid particles and fluid in a wall-less environment. While attempts to levitate small animals have been made, the biological effects of such levitation have been scarcely documented. Here, our goal was to explore if zebrafish embryos can be levitated (peak pressures at the pressure node and anti-node: 135 dB and 144 dB, respectively) with no effects on early development. We levitated the embryos (n = 94) at 2-14 hours post fertilization (hpf) for 1000 (n = 47) or 2000 seconds (n = 47). We compared the size and number of trunk neuromasts and otoliths in sonicated samples to controls (n = 94), and found no statistically significant differences (p > 0.05). While mortality rate was lower in the control group (22.3%) compared to that in the 1000 s (34.0%) and 2000 s (42.6%) levitation groups, the differences were statistically insignificant (p > 0.05). The results suggest that acoustic levitation for less than 2000 sec does not interfere with the development of zebrafish embryos, but may affect mortality rate. Acoustic levitation could potentially be used as a non-contacting wall-less platform for characterizing and manipulating vertebrae embryos without causing major adverse effects to their development.


Assuntos
Embrião não Mamífero/fisiologia , Desenvolvimento Embrionário/fisiologia , Mecanotransdução Celular/fisiologia , Simulação de Ausência de Peso/métodos , Peixe-Zebra/embriologia , Peixe-Zebra/crescimento & desenvolvimento , Animais , Embrião não Mamífero/embriologia , Embrião não Mamífero/efeitos da radiação , Desenvolvimento Embrionário/efeitos da radiação , Mecanotransdução Celular/efeitos da radiação , Som
17.
Ultrasound Med Biol ; 41(8): 2259-65, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-25922135

RESUMO

There is no cure for osteoarthritis. Current drug delivery relies on systemic delivery or injections into the joint. Because articular cartilage (AC) degeneration can be local and drug exposure outside the lesion can cause adverse effects, localized drug delivery could permit new drug treatment strategies. We investigated whether intense megahertz ultrasound (frequency: 1.138 MHz, peak positive pressure: 2.7 MPa, Ispta: 5 W/cm(2), beam width: 5.7 mm at -6 dB, duty cycle: 5%, pulse repetition frequency: 285 Hz, mechanical index: 1.1) can deliver agents into AC without damaging it. Using ultrasound, we delivered a drug surrogate down to a depth corresponding to 53% depth of the AC thickness without causing histologically detectable damage to the AC. This may be important because early osteoarthritis typically exhibits histopathologic changes in the superficial AC. In conclusion, we identify intense megahertz ultrasound as a technique that potentially enables localized non-destructive delivery of osteoarthritis drugs or drug carriers into articular cartilage.


Assuntos
Cartilagem Articular/química , Cartilagem Articular/efeitos da radiação , Eletroporação/métodos , Ondas de Choque de Alta Energia , Ácido Fosfotúngstico/química , Sonicação/métodos , Animais , Cartilagem Articular/diagnóstico por imagem , Bovinos , Meios de Contraste , Ultrassonografia
18.
J Acoust Soc Am ; 137(3): 1134-43, 2015 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-25786929

RESUMO

The fundamental flexural guided wave (FFGW) enables ultrasonic assessment of cortical bone thickness. In vivo, it is challenging to detect this mode, as its power ratio with respect to disturbing ultrasound is reduced by soft tissue covering the bone. A phase-delayed ultrasound source is proposed to tailor the FFGW excitation in order to improve its power ratio. This situation is analyzed by 2D finite-element simulations. The soft tissue coating (7-mm thick) was simulated as a fluid covering an elastic plate (bone, 2-6 mm thick). A six-element array of emitters on top of the coating was excited by 50-kHz tone bursts so that each emitter was appropriately delayed from the previous one. Response was recorded by an array of receivers on top of the coating, 20-50 mm away from the closest emitter. Simulations predicted that such tailored/phase-delayed excitations should improve the power ratio of FFGW by 23 ± 5 dB, independent of the number of emitters (N). On the other hand, the FFGW magnitude should increase by 5.8 ± 0.5 dB for each doubling of N. This suggests that mode tailoring based on phase-delayed excitation may play a key role in the development of an in vivo FFGW assessment.

19.
Biophys J ; 93(3): 795-805, 2007 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-17496045

RESUMO

Linear molecular motors translocate along polymeric tracks using discrete steps. The step length is usually measured using constant-force single molecule experiments in which the polymer is tethered to a force-clamped microsphere. During the enzymatic cycle the motor shortens the tether contour length. Experimental conditions influence the achievable step length resolution, and ideally experiments should be conducted with high clamp-force using slow motors linked to small beads via stiff short tethers. We focus on the limitations that the polymer-track flexibility, the thermal motion of the microsphere, and the motor kinetics pose for step-length measurement in a typical optical tweezers experiment. An expression for the signal/noise ratio in a constant-force, worm-like chain tethered particle, single-molecule experiment is developed. The signal/noise ratio is related to the Fourier transform of the pairwise distance distribution, commonly used to determine step length from a time-series. Monte Carlo simulations verify the proposed theory for experimental parameter values typically encountered with molecular motors (polymerases and helicases) translocating along single- or double-stranded nucleic acids. The predictions are consistent with recent experimental results for double-stranded DNA tethers. Our results map favorable experimental conditions for observing single motor steps on various substrates but indicate that principal resolution limits are set by thermal fluctuations.


Assuntos
Simulação por Computador , Modelos Teóricos , Biopolímeros/química , DNA/química , Cinética , Microesferas , Método de Monte Carlo , RNA/química
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