Host- plasmid network structure in wastewater is linked to antimicrobial resistance genes.

As mobile genetic elements, plasmids are central for our understanding of antimicrobial resistance spread in microbial communities. Plasmids can have varying fitness effects on their host bacteria, which will markedly impact their role as antimicrobial resistance vectors. Using a plasmid population model, we first show that beneficial plasmids interact with a higher number of hosts than costly plasmids when embedded in a community with multiple hosts and plasmids. We then analyse the network of a natural host-plasmid wastewater community from a Hi-C metagenomics dataset. As predicted by the model, we find that antimicrobial resistance encoding plasmids, which are likely to have positive fitness effects on their hosts in wastewater, interact with more bacterial taxa than non-antimicrobial resistance plasmids and are disproportionally important for connecting the entire network compared to non- antimicrobial resistance plasmids. This highlights the role of antimicrobials in restructuring host-plasmid networks by increasing the benefits of antimicrobial resistance carrying plasmids, which can have consequences for the spread of antimicrobial resistance genes through microbial networks. Furthermore, that antimicrobial resistance encoding plasmids are associated with a broader range of hosts implies that they will be more robust to turnover of bacterial strains.

How artificial light at night may rewire ecological networks: concepts and models.

Artificial light at night (ALAN) is eroding natural light cycles and thereby changing species distributions and activity patterns. Yet little is known about how ecological interaction networks respond to this global change driver. Here, we assess the scientific basis of the current understanding of community-wide ALAN impacts. Based on current knowledge, we conceptualize and review four major pathways by which ALAN may affect ecological interaction networks by (i) impacting primary production, (ii) acting as an environmental filter affecting species survival, (iii) driving the movement and distribution of species, and (iv) changing functional roles and niches by affecting activity patterns. Using an allometric-trophic network model, we then test how a shift in temporal activity patterns for diurnal, nocturnal and crepuscular species impacts food web stability. The results indicate that diel niche shifts can severely impact community persistence by altering the temporal overlap between species, which leads to changes in interaction strengths and rewiring of networks. ALAN can thereby lead to biodiversity loss through the homogenization of temporal niches. This integrative framework aims to advance a predictive understanding of community-level and ecological-network consequences of ALAN and their cascading effects on ecosystem functioning. This article is part of the theme issue 'Light pollution in complex ecological systems'.

Combined light pollution and night warming as a novel threat to ecosystems.

Artificial light at night (ALAN) and night-time warming (NW) are a combined threat altering the night-time environment and the behaviour and physiology of organisms. Impacts on fitness and the nocturnal niche have knock-on effects for ecosystem structure and function. Understanding the way both stressors interact is critical for making ecological predictions.

Towards a mechanistic understanding of the effects of artificial light at night on insect populations and communities.

Artificial light at night (ALAN) is markedly changing the night-time environment with many studies showing single-species responses. Exposure to ALAN can lead to population declines that should have consequences for the functioning and stability of ecological communities. Here, we summarise current knowledge on how insect communities are affected by ALAN. Based on reported effects of ALAN on the interactions between species, and what has been demonstrated for similar effects in other contexts, we argue that direct effects of ALAN on a few species can potentially propagate through the network of species interactions to have widespread effects in ecological communities. This can lead to a shift in community structure and simplified communities. We discuss the diversity of ALAN as a pressure and highlight major gaps in the research field. In particular, we conclude that landscape level impacts on populations and communities are understudied.

Fitness effects of plasmids shape the structure of bacteria-plasmid interaction networks.

Antimicrobial resistance (AMR) genes are often carried on broad host range plasmids, and the spread of AMR within microbial communities will therefore depend on the structure of bacteria­plasmid networks. Empirical and theoretical studies of ecological interaction networks suggest that network structure differs between communities that are predominantly mutualistic versus antagonistic, with the former showing more generalized interactions (i.e., species interact with many others to a similar extent). This suggests that mutualistic bacteria­plasmid networks­where antibiotics are present and plasmids carry AMR genes­will be more generalized than antagonistic interactions, where plasmids do not confer benefits to their hosts. We first develop a simple theory to explain this link: fitness benefits of harboring a mutualistic symbiont promote the spread of the symbiont to other species. We find support for this theory using an experimental bacteria­symbiont (plasmid) community, where the same plasmid can be mutualistic or antagonistic depending on the presence of antibiotics. This short-term and parsimonious mechanism complements a longer-term mechanism (coevolution and stability) explaining the link between mutualistic and antagonistic interactions and network structure.

Spectrum of artificial light at night drives impact of a diurnal species in insect food web.

Artificial light at night (ALAN) has become a profound form of global anthropogenic environmental change differing in from natural light regimes in intensity, duration, distribution and spectra. It is clear that ALAN impacts individual organisms, however, population level effects, particularly of spectral changes, remain poorly understood. Here we exposed experimental multigenerational aphid-parasitoid communities in the field to seven different light spectra at night ranging from 385 to 630 nm and compared responses to a natural day-night light regime. We found that while aphid population growth was initially unaffected by ALAN, parasitoid efficiency declined under most ALAN spectra, leading to reduced top-down control and higher aphid densities. These results differ from those previously found for white light, showing a strong impact on species' daytime performance. This highlights the importance of ALAN spectra when considering their environmental impact. ALAN can have large impacts on the wider ecological community by influencing diurnal species.

A rodent herbivore reduces its predation risk through ecosystem engineering.

Predator-prey interactions are ubiquitous and powerful forces that structure ecological communities.1-3 Habitat complexity has been shown to be particularly important in regulating the strength of predator-prey interactions.4-6 While it is well established that changes in habitat structure can alter the efficacy of predatory and anti-predatory behaviors,7-9 little is known about the consequences of engineering activity by prey species who modify the external environment to reduce their own predation risk. Using field surveys and manipulative experiments, we evaluated how habitat modification by Brandt's voles (Lasiopodomys brandtii) influences predation risk from a principal avian predator (shrike; Lanius spp.) in a steppe grassland, located in Inner Mongolia, China. We found that voles actively modify habitat structure by cutting down a large, unpalatable bunchgrass species (Achnatherum splendens) in the presence of shrikes, a behavior that disappeared when these avian predators were excluded experimentally. The damage activities of these voless dramatically decreased the volume of unpalatable grasses, which in turn reduced visitations by shrikes and thus mortality rates. Our study shows that herbivorous prey that act as ecosystem engineers can directly reduce their own predation risk by modifying habitat structure. Given the ubiquity of predation risks faced by consumers, and the likely ability of many consumers to alter the habitat structure in which they live, the interplay between predation risk and ecosystem engineering may be an important but unappreciated mechanism at play in natural communities.

Stress causes interspecific facilitation within a compost community.

Ecological theory predicts interactions between species to become more positive under abiotic stress, while competition should prevail in more benign environments. However, experimental tests of this stress gradient hypothesis in natural microbial communities are lacking. We test this hypothesis by measuring interactions between 10 different members of a bacterial community inhabiting potting compost in the presence or absence of toxic copper stress. We found that copper stress caused significant net changes in species interaction signs, shifting the net balance towards more positive interactions. This pattern was at least in part driven by copper-sensitive isolates - that produced relatively small amounts of metal-detoxifying siderophores - benefitting from the presence of other species that produce extracellular detoxifying agents. As well as providing support for the stress gradient hypothesis, our results highlight the importance of community-wide public goods in shaping microbial community composition.

Pervasiveness of Biological Impacts of Artificial Light at Night.

Artificial light at night (ALAN) and its associated biological impacts have regularly been characterized as predominantly urban issues. Although far from trivial, this would imply that these impacts only affect ecosystems that are already heavily modified by humans and are relatively limited in their spatial extent, at least as compared with some key anthropogenic pressures on the environment that attract much more scientific and public attention, such as climate change or plastic pollution. However, there are a number of reasons to believe that ALAN and its impacts are more pervasive, and therefore need to be viewed from a broader geographic perspective rather than an essentially urban one. Here we address, in turn, 11 key issues when considering the degree of spatial pervasiveness of the biological impacts of ALAN. First, the global extent of ALAN is likely itself commonly underestimated, as a consequence of limitations of available remote sensing data sources and how these are processed. Second and third, more isolated (rural) and mobile (e.g., vehicle headlight) sources of ALAN may have both very widespread and important biological influences. Fourth and fifth, the occurrence and impacts of ALAN in marine systems and other remote settings, need much greater consideration. Sixth, seventh, and eighth, there is growing evidence for important biological impacts of ALAN at low light levels, from skyglow, and over long distances (because of the altitudes from which it may be viewed by some organisms), all of which would increase the areas over which impacts are occurring. Ninth and tenth, ALAN may exert indirect biological effects that may further expand these areas, because it has a landscape ecology (modifying movement and dispersal and so hence with effects beyond the direct extent of ALAN), and because ALAN interacts with other anthropogenic pressures on the environment. Finally, ALAN is not stable, but increasing rapidly in global extent, and shifting toward wavelengths of light that often have greater biological impacts.

Soil engineering by ants facilitates plant compensation for large herbivore removal of aboveground biomass.

The interplay between top-down and bottom-up processes determines ecosystem productivity. Yet, the factors that mediate the balance between these opposing forces remain poorly understood. Furthering this challenge, complex and often cryptic factors like ecosystem engineering and trait-mediated interactions may play major roles in mediating the outcomes of top-down and bottom-up interactions. In semiarid grasslands of northeastern China, we conducted a large-scale, three-year experiment to evaluate how soil engineering by ants and plasticity in plants independently and jointly influenced the top-down effects of grazing by a ubiquitous herbivore (cattle) on aboveground standing biomass of the dominant perennial grass, Leymus chinensis. Herbivory had strong top-down effects, reducing L. chinensis AB by 25% relative to baseline levels without cattle or ants. In contrast, soil engineering by ants facilitated weak bottom-up effects in the absence of herbivory. However, in the presence of herbivory, soil engineering effects were strong enough to fully offset herbivore removal of aboveground biomass. This outcome was mediated by L. chinensis's plasticity in reallocating growth from below- to aboveground biomass, a result linked to additive effects of engineers and herbivores increasing soil N availability and engineering effects improving soil structure. Soil engineering increased soil N by 12%, promoting aboveground biomass. Herbivores increased soil N by 13% via defecation, but this increase failed to offset their reductions in aboveground biomass in isolation. However, when combined, engineers and herbivores increased soil N by 26% and engineers improved soil bulk density, facilitating L. chinensis to shift resource allocations from below- to aboveground biomass sufficiently to fully offset herbivore suppression of aboveground biomass. Our results demonstrate that soil engineering and trait-mediated effects of plant plasticity can strongly mediate the outcome of top-down and bottom-up interactions. These cryptic but perhaps ubiquitous processes may help to explain the long-debated phenomenon of plant compensatory responses to large grazers.

A meta-analysis of biological impacts of artificial light at night.

Natural light cycles are being eroded over large areas of the globe by the direct emissions and sky brightening that result from sources of artificial night-time light. This is predicted to affect wild organisms, particularly because of the central role that light regimes play in determining the timing of biological activity. Although many empirical studies have reported such effects, these have focused on particular species or local communities and have thus been unable to provide a general evaluation of the overall frequency and strength of these impacts. Using a new database of published studies, we show that exposure to artificial light at night induces strong responses for physiological measures, daily activity patterns and life history traits. We found particularly strong responses with regards to hormone levels, the onset of daily activity in diurnal species and life history traits, such as the number of offspring, predation, cognition and seafinding (in turtles). So far, few studies have focused on the impact of artificial light at night on ecosystem functions. The breadth and often strength of biological impacts we reveal highlight the need for outdoor artificial night-time lighting to be limited to the places and forms-such as timing, intensity and spectrum-where it is genuinely required by the people using it to minimize ecological impacts.

Longer photoperiods through range shifts and artificial light lead to a destabilizing increase in host-parasitoid interaction strength.

Many organisms are experiencing changing daily light regimes due to latitudinal range shifts driven by climate change and increased artificial light at night (ALAN). Activity patterns are often driven by light cycles, which will have important consequences for species interactions. We tested whether longer photoperiods lead to higher parasitism rates by a day-active parasitoid on its host using a laboratory experiment in which we independently varied daylength and the presence of ALAN. We then tested whether reduced nighttime temperature tempers the effect of ALAN. We found that parasitism rate increased with daylength, with ALAN intensifying this effect only when the temperature was not reduced at night. The impact of ALAN was more pronounced under short daylength. Increased parasitoid activity was not compensated for by reduced life span, indicating that increased daylength leads to an increase in total parasitism effects on fitness. To test the significance of increased parasitism rate for population dynamics, we developed a host-parasitoid model. The results of the model predicted an increase in time-to-equilibrium with increased daylength and, crucially, a threshold daylength above which interactions are unstable, leading to local extinctions. Here we demonstrate that ALAN impact interacts with daylength and temperature by changing the interaction strength between a common day-active consumer species and its host in a predictable way. Our results further suggest that range expansion or ALAN-induced changes in light regimes experienced by insects and their natural enemies will result in unstable dynamics beyond key tipping points in daylength.

Reciprocal facilitation between large herbivores and ants in a semi-arid grassland.

While positive interactions have been well documented in plant and sessile benthic marine communities, their role in structuring mobile animal communities and underlying mechanisms has been less explored. Using field removal experiments, we demonstrated that a large vertebrate herbivore (cattle; Bos tarurs) and a much smaller invertebrate (ants; Lasius spp.), the two dominant animal taxa in a semi-arid grassland in Northeast China, facilitate each other. Cattle grazing led to higher ant mound abundance compared with ungrazed sites, while the presence of ant mounds increased the foraging of cattle during the peak of the growing season. Mechanistically, these reciprocal positive effects were driven by habitat amelioration and resource (food) enhancement by cattle and ants (respectively). Cattle facilitated ants, probably by decreasing plant litter accumulation by herbivory and trampling, allowing more light to reach the soil surface leading to microclimatic conditions that favour ants. Ants facilitated cattle probably by increasing soil nutrients via bioturbation, increasing food (plant) biomass and quality (nitrogen content) for cattle. Our study demonstrates reciprocal facilitative interactions between two animal species from phylogenetically very distant taxa. Such reciprocal positive interactions may be more common in animal communities than so far assumed, and they should receive more attention to improve our understanding of species coexistence and animal community assembly.

Shifting daylength regimes associated with range shifts alter aphid-parasitoid community dynamics.

With climate change leading to poleward range expansion of species, populations are exposed to new daylength regimes along latitudinal gradients. Daylength is a major factor affecting insect life cycles and activity patterns, so a range shift leading to new daylength regimes is likely to affect population dynamics and species interactions; however, the impact of daylength in isolation on ecological communities has not been studied so far. Here, we tested for the direct and indirect effects of two different daylengths on the dynamics of experimental multitrophic insect communities. We compared the community dynamics under "southern" summer conditions of 14.5-hr daylight to "northern" summer conditions of 22-hr daylight. We show that food web dynamics indeed respond to daylength with one aphid species (Acyrthosiphon pisum) reaching much lower population sizes at the northern daylength regime compared to under southern conditions. In contrast, in the same communities, another aphid species (Megoura viciae) reached higher population densities under northern conditions. This effect at the aphid level was driven by an indirect effect of daylength causing a change in competitive interaction strengths, with the different aphid species being more competitive at different daylength regimes. Additionally, increasing daylength also increased growth rates in M. viciae making it more competitive under summer long days. As such, the shift in daylength affected aphid population sizes by both direct and indirect effects, propagating through species interactions. However, contrary to expectations, parasitoids were not affected by daylength. Our results demonstrate that range expansion of whole communities due to climate change can indeed change interaction strengths between species within ecological communities with consequences for community dynamics. This study provides the first evidence of daylength affecting community dynamics, which could not be predicted from studying single species separately.

Low Levels of Artificial Light at Night Strengthen Top-Down Control in Insect Food Web.

Artificial light has transformed the nighttime environment of large areas of the earth, with 88% of Europe and almost 50% of the United States experiencing light-polluted night skies [1]. The consequences for ecosystems range from exposure to high light intensities in the vicinity of direct light sources to the very widespread but lower lighting levels further away [2]. While it is known that species exhibit a range of physiological and behavioral responses to artificial nighttime lighting [e.g., 3-5], there is a need to gain a mechanistic understanding of whole ecological community impacts [6, 7], especially to different light intensities. Using a mesocosm field experiment with insect communities, we determined the impact of intensities of artificial light ranging from 0.1 to 100 lux on different trophic levels and interactions between species. Strikingly, we found the strongest impact at low levels of artificial lighting (0.1 to 5 lux), which led to a 1.8 times overall reduction in aphid densities. Mechanistically, artificial light at night increased the efficiency of parasitoid wasps in attacking aphids, with twice the parasitism rate under low light levels compared to unlit controls. However, at higher light levels, parasitoid wasps spent longer away from the aphid host plants, diminishing this increased efficiency. Therefore, aphids reached higher densities under increased light intensity as compared to low levels of lighting, where they were limited by higher parasitoid efficiency. Our study highlights the importance of different intensities of artificial light in driving the strength of species interactions and ecosystem functions.

How ecological communities respond to artificial light at night.

Many ecosystems worldwide are exposed to artificial light at night (ALAN), from streetlights and other sources, and a wide range of organisms has been shown to respond to this anthropogenic pressure. This raises concerns about the consequences for major ecosystem functions and their stability. However, there is limited understanding of how whole ecological communities respond to ALAN, and this cannot be gained simply by making predictions from observed single species physiological, behavioral, or ecological responses. Research needs to include an important building block of ecological communities, namely the interactions between species that drive ecological and evolutionary processes in ecosystems. Here, we summarize current knowledge about community responses to ALAN and illustrate different pathways and their impact on ecosystem functioning and stability. We discuss that documentation of the impact of ALAN on species interaction networks and trait distributions provides useful tools to link changes in community structure to ecosystem functions. Finally, we suggest several approaches to advance research that will link the diverse impact of ALAN to changes in ecosystems.

Trophic redundancy reduces vulnerability to extinction cascades.

Current species extinction rates are at unprecedentedly high levels. While human activities can be the direct cause of some extinctions, it is becoming increasingly clear that species extinctions themselves can be the cause of further extinctions, since species affect each other through the network of ecological interactions among them. There is concern that the simplification of ecosystems, due to the loss of species and ecological interactions, increases their vulnerability to such secondary extinctions. It is predicted that more complex food webs will be less vulnerable to secondary extinctions due to greater trophic redundancy that can buffer against the effects of species loss. Here, we demonstrate in a field experiment with replicated plant-insect communities, that the probability of secondary extinctions is indeed smaller in food webs that include trophic redundancy. Harvesting one species of parasitoid wasp led to secondary extinctions of other, indirectly linked, species at the same trophic level. This effect was markedly stronger in simple communities than for the same species within a more complex food web. We show that this is due to functional redundancy in the more complex food webs and confirm this mechanism with a food web simulation model by highlighting the importance of the presence and strength of trophic links providing redundancy to those links that were lost. Our results demonstrate that biodiversity loss, leading to a reduction in redundant interactions, can increase the vulnerability of ecosystems to secondary extinctions, which, when they occur, can then lead to further simplification and run-away extinction cascades.

Ecosystem engineering strengthens bottom-up and weakens top-down effects via trait-mediated indirect interactions.

Trophic interactions and ecosystem engineering are ubiquitous and powerful forces structuring ecosystems, yet how these processes interact to shape natural systems is poorly understood. Moreover, trophic effects can be driven by both density- and trait-mediated interactions. Microcosm studies demonstrate that trait-mediated interactions may be as strong as density-mediated interactions, but the relative importance of these pathways at natural spatial and temporal scales is underexplored. Here, we integrate large-scale field experiments and microcosms to examine the effects of ecosystem engineering on trophic interactions while also exploring how ecological scale influences density- and trait-mediated interaction pathways. We demonstrate that (i) ecosystem engineering can shift the balance between top-down and bottom-up interactions, (ii) such effects can be driven by cryptic trait-mediated interactions, and (iii) the relative importance of density- versus trait-mediated interaction pathways can be scale dependent. Our findings reveal the complex interplay between ecosystem engineering, trophic interactions, and ecological scale in structuring natural systems.

Nonhost diversity and density reduce the strength of parasitoid-host interactions.

The presence of nonprey or nonhosts is known to reduce the strength of consumer- resource interactions by increasing the consumer's effort needed to find its resource. These interference effects can have a stabilizing effect on consumer-resource dynamics, but have also been invoked to explain parasitoid extinctions. To understand how nonhosts affect parasitoids, we manipulated the density and diversity of nonhost aphids using experimental host-parasitoid communities and tested how this affects parasitation efficiency of two aphid parasitoid species. To further study the behavioral response of parasitoids to nonhosts, we tested for changes in parasitoid time allocation in relation to their host-finding strategies. The proportion of successful attacks (attack rate) in both parasitoid species was reduced by the presence of nonhosts. The parasitoid Aphidius megourae was strongly affected by increasing nonhost diversity with the attack rate dropping from 0.39 without nonhosts to 0.05 with high diversity of nonhosts, while Lysiphlebus fabarum responded less strongly, but in a more pronounced way to an increase in nonhost density. Our experiments further showed that increasing nonhost diversity caused host searching and attacking activity levels to fall in A. megourae, but not in L. fabarum, and that A. megourae changed its behavior after a period of time in the presence of nonhosts by increasing its time spent resting. This study shows that nonhost density and diversity in the environment are crucial determinants for the strength of consumer-resource interactions. Their impact upon a consumer's efficiency strongly depends on its host/prey finding strategy as demonstrated by the different responses for the two parasitoid species. We discuss that these trait-mediated indirect interactions between host and nonhost species are important for community stability, acting either stabilizing or destabilizing depending on the level of nonhost density or diversity present.

Defensive insect symbiont leads to cascading extinctions and community collapse.

Animals often engage in mutualistic associations with microorganisms that protect them from predation, parasitism or pathogen infection. Studies of these interactions in insects have mostly focussed on the direct effects of symbiont infection on natural enemies without studying community-wide effects. Here, we explore the effect of a defensive symbiont on population dynamics and species extinctions in an experimental community composed of three aphid species and their associated specialist parasitoids. We found that introducing a bacterial symbiont with a protective (but not a non-protective) phenotype into one aphid species led to it being able to escape from its natural enemy and increase in density. This changed the relative density of the three aphid species which resulted in the extinction of the two other parasitoid species. Our results show that defensive symbionts can cause extinction cascades in experimental communities and so may play a significant role in the stability of consumer-herbivore communities in the field.