SSR-based association mapping of salt tolerance in cotton (Gossypium hirsutum L.).

The identification of simple sequence repeat (SSR) markers associated with salt tolerance in cotton contributes to molecular assisted selection (MAS), which can improve the efficiency of traditional breeding. In this study, 134 samples of upland cotton cultivars were selected. The seedling emergence rates were tested under 0.3% NaCl stress. A total of 74 SSR markers were used to scan the genomes of these samples. To identify SSR markers associated with salt tolerance, an association analysis was performed between salt tolerance and SSR markers using TASSEL 2.1, based on the analysis of genetic structure using Structure 2.3.4. The results showed that the seedling emergence rates of 134 cultivars were significantly different, and 27 salt-sensitive and 10 salt-tolerant cultivars were identified. A total of 148 loci were found in 74 SSR markers involving 246 allelic variations, which ranged from 2 to 7 with an average of 3.32 per SSR marker. The gene diversity ranged from 0.0295 to 0.4959, with the average being 0.2897. The polymorphic information content ranged from0.0290 to 0.3729, with the average being 0.2381. This natural population was classified into two subgroups by Structure 2.3.4, containing 89 and 45 samples, respectively. Finally, eight SSR sites associated with salt tolerance ware found through an association analysis, with the rate of explanation ranging from 2.91 to 7.82% and an average of 4.32%. These results provide reference data for the use MAS for salt tolerance in cotton.

Analysis of upland cotton (Gossypium hirsutum) response to Verticillium dahliae inoculation by transcriptome sequencing.

Verticillium wilt is one of the main diseases in cotton (Gossypium hirsutum), severely reduces yield and fiber quality, and is difficult to be con-trolled effectively. At present, the molecular mechanism that confers resistance to this disease is unclear. Transcriptome sequencing is an important method to detect resistance genes, explore metabolic pathways, and study resistance mechanisms. In this study, the transcriptome of a disease-resistant inbred cot-ton line inoculated with Verticillium dahliae was sequenced. A total of 126,402 unigenes were obtained using de novo assembly and data analysis, 99,712 (78.88%) of which were annotated into the Nr, Nt, Swiss-Prot, KEGG, COG, and GO databases. The expression patterns of 16 candidate disease-resis-tance genes showed that some genes were upregulated soon after V. dahliae inoculation and others were upregulated later, which may indicate instanta-neous basal defense and lagged specific defense, respectively. We conducted a preliminary analysis of the transcriptome database, which will contribute to further research regarding the cloning of disease-resistance genes.

Determination of Debye-Waller factor and structure factors for Si by quantitative convergent-beam electron diffraction using off-axis multi-beam orientations.

Debye-Waller (DW) factors and structure factors have been measured for Si using convergent-beam electron diffraction (CBED) experiments with a transmission electron microscope equipped with a field-emission gun and a post-column energy-filtering device. Si has been used here to evaluate the accuracy of multi-beam near-zone-axis orientations for the simultaneous refinement of DW factors and multiple structure factors. Strong dynamic interactions among different beams are obtained by tilting the crystal to specific four- or six-beam orientations near major zone axes, which provide sufficient sensitivity to determine accurate DW factors and structure factors. The DW factors of Si were measured using four-beam conditions near the [001] zone axis for temperatures ranging from 96 to 300 K. A comparison of the multi-beam near-zone-axis orientations with other CBED methods for DW and structure factor F(g) refinement is presented.

Simultaneous determination of highly precise Debye-Waller factors and structure factors for chemically ordered NiAl.

Accurate Debye-Waller (DW) factors and several low-index structure factors of chemically ordered ß-NiAl at different temperatures have been measured using an off-zone-axis multi-beam convergent-beam electron diffraction method. The temperature dependences of DW factors of Ni and Al atoms are compared with previous experimental measurements and theoretical calculations. The temperature below which the DW factor of Ni becomes smaller than that of Al was found to be lower than previously reported. Structure factors are determined with an accuracy of 0.05% and compared with prior reports.