Computer-assisted image analysis of agonist-mediated microvascular constriction response in mouse cremaster muscle.

In this work, we implemented an automated method using a correlation coefficient to select a time interval with a minimum movement or rest interval, together with analysis of variance for measurement of blood vessel diameter in the cremaster muscle. Video images binarization using analysis of variance resulted in an enhanced and a clearly defined vessel wall. Histamine (1 mM) induced a marked reduction in vascular diameter (vasoconstriction) in the cremaster muscle from mice fed with standard (SD) and high fat diet (HFD). However, the effect of histamine was reduced in HFD mice compared to SD mice. Thus, the change in vascular diameter was 87.14% ± 7.44% and 52.63% ± 16.27% in SD and HFD mice, respectively. In conclusion, determination of a rest interval with minimal movement and the use of analysis of variance resulted useful to evaluate vascular diameter in small arteries. We suggest this method to streamline experiments facilitating cardiovascular research.

Motility patterns of Trypanosoma cruzi trypomastigotes correlate with the efficiency of parasite invasion in vitro.

Numerous works have demonstrated that trypanosomatid motility is relevant for parasite replication and sensitivity. Nonetheless, although some findings indirectly suggest that motility also plays an important role during infection, this has not been extensively investigated. This work is aimed at partially filling this void for the case of Trypanosoma cruzi. After recording swimming T. cruzi trypomastigotes (CL Brener strain) and recovering their individual trajectories, we statistically analyzed parasite motility patterns. We did this with parasites that swim alone or above monolayer cultures of different cell lines. Our results indicate that T. cruzi trypomastigotes change their motility patterns when they are in the presence of mammalian cells, in a cell-line dependent manner. We further performed infection experiments in which each of the mammalian cell cultures were incubated for 2 h together with trypomastigotes, and measured the corresponding invasion efficiency. Not only this parameter varied from cell line to cell line, but it resulted to be positively correlated with the corresponding intensity of the motility pattern changes. Together, these results suggest that T. cruzi trypomastigotes are capable of sensing the presence of mammalian cells and of changing their motility patterns accordingly, and that this might increase their invasion efficiency.

Bistable behaviour and medium-dependent post-translational regulation of the tryptophanase operon regulatory pathway in Echerichia coli.

The present work is aimed at studying the dynamic behaviour of the tryptopnanase (tna) operon, which encodes the proteins necessary to uptake and metabolise tryptophan to use it as a carbon source in the absence of glucose. To this end, we designed a micro-bioreactor capable of driving a bacterial culture to a stationary state. This allowed us to explore (at the single cell level) the tna operon steady-state dynamics under multiple culture conditions. Our experimental results suggest that the tna operon is bistable for a specific range of environmental tryptophan and glucose concentrations, and evidence that both reagents play a role on the activation of the enzyme in charge of metabolising tryptophan: tryptophanase (TnaA). Based on our experimental data and the already known regulatory mechanisms, we developed a mathematical model for the tna operon regulatory pathway. Our modelling results reinforce the claim that the tna operon is bistable, and further suggest that the activity of enzyme TnaA is regulated by the environmental levels of glucose and tryptophan via a common signalling pathway. Possible biological implications of our findings are further discussed.

Motility of Escherichia coli in a quasi-two-dimensional porous medium.

Bacterial migration through confined spaces is critical for several phenomena, such as biofilm formation, bacterial transport in soils, and bacterial therapy against cancer. In the present work, E. coli (strain K12-MG1655 WT) motility was characterized by recording and analyzing individual bacterium trajectories in a simulated quasi-two-dimensional porous medium. The porous medium was simulated by enclosing, between slide and cover slip, a bacterial-culture sample mixed with uniform 2.98-µm-diameter spherical latex particles. The porosity of the medium was controlled by changing the latex particle concentration. By statistically analyzing several trajectory parameters (instantaneous velocity, turn angle, mean squared displacement, etc.), and contrasting with the results of a random-walk model developed ad hoc, we were able to quantify the effects that different obstacle concentrations have upon bacterial motility.

Short-time dynamics of monomers and dimers in quasi-two-dimensional colloidal mixtures.

We report on the short-time dynamics in colloidal mixtures made up of monomers and dimers highly confined between two glass plates. At low concentrations, the experimental measurements of colloidal motion agree well with the solution of the Navier-Stokes equation at low Reynolds numbers; the latter takes into account the increase in the drag force on a colloidal particle due to wall-particle hydrodynamic forces. More importantly, we find that the ratio of the short-time diffusion coefficient of the monomer and that of the center of mass of the dimmer is almost independent of both the dimer molar fraction, x_{d}, and the total packing fraction, ϕ, up to ϕ≈0.5. At higher concentrations, this ratio displays a small but systematic increase. A similar physical scenario is observed for the ratio between the parallel and the perpendicular components of the short-time diffusion coefficients of the dimer. This dynamical behavior is corroborated by means of molecular dynamics computer simulations that include explicitly the particle-particle hydrodynamic forces induced by the solvent. Our results suggest that the effects of colloid-colloid hydrodynamic interactions on the short-time diffusion coefficients are almost identical and factorable in both species.

Experimental and Mathematical-Modeling Characterization of Trypanosoma cruzi Epimastigote Motility.

The present work is aimed at characterizing the motility of parasite T. cruzi in its epimastigote form. To that end, we recorded the trajectories of two strains of this parasite (a wild-type strain and a stable transfected strain, which contains an ectopic copy of LYT1 gene and whose motility is known to be affected). We further extracted parasite trajectories from the recorded videos, and statistically analysed the following trajectory-step features: step length, angular change of direction, longitudinal and transverse displacements with respect to the previous step, and mean square displacement. Based on the resulting observations, we developed a mathematical model to simulate parasite trajectories. The fact that the model predictions closely match most of the experimentally observed parasite-trajectory characteristics, allows us to conclude that the model is an accurate description of T. cruzi motility.

Direct measurement of colloidal particle rotation and field dependence in alternating current electrohydrodynamic flows.

We have measured the influence of both applied alternating current (AC) field strength and frequency on the electrohydrodynamic (EH) flows present in colloidal systems near an electrode surface. The effect of the flows is visualized by the rotation of the colloids, fluorescently labeled by a novel technique involving EH-driven aggregation of much smaller tracer colloids to the surface of the larger colloids. Our results show an E2 dependence of these flows, consistent with an induced charge mechanism for effective colloidal interactions. We have also observed a crossover in frequency that suggests a change in the origin of the induced charge, consistent with predictions from available theory. The EH flows appear to be hydrodynamically screened inside clusters, as evidenced by the lack of rotation of interior colloids and the cluster-size independent rotation rate of colloids on the boundary.

Short-time dynamics in quasi-two-dimensional colloidal suspensions.

The short-time dynamic properties of colloidal particles in quasi-two-dimensional geometries are studied by digital video microscopy. We demonstrate experimentally that the effective-two-dimensional physical quantities such as the dynamic structure factor, the hydrodynamic function, and the hydrodynamic diffusion coefficients are related in exactly the same manner as their three-dimensional counterparts.

Effective pair potential between confined charged colloidal particles.

The pair correlation function g(r) between like-charged colloidal particles in quasi-two-dimensional geometries is measured by optical microscopy for a wide range of particle concentrations and various degrees of confinement. The effective pair potential u(r) is obtained by deconvoluting g(r) via Monte Carlo computer simulations. Our results confirm the existence of a long-range attractive component of u(r) and the appearance of an extra attractive term under stringent confinement.

Short-time dynamics of colloidal particles confined between two walls.

The short-time dynamics of colloidal particles in a quasi-two-dimensional geometry is studied by digital video microscopy. The particles (polystyrene spheres) are suspended in water and confined between two parallel glass plates, forming an effective two-dimensional system. The (effective) two-dimensional van Hove function G(r,t) and its self and distinct part are measured with a time resolution of 1/30 s. We found that the general behavior of these time-correlation functions (and their Fourier transforms) is quite similar to that of their three-dimensional counterparts. The effects of the strong hydrodynamic coupling of the particles motion to the walls and that due to the hydrodynamic interactions between particles are contained in the (effective) hydrodynamic function H(k) obtained from the initial slope of F(k,t) [the Fourier transform of G(r,t)]. We found that H(k), as a function of the wave vector k and particle concentration, exhibits a similar qualitative behavior to the hydrodynamic function in homogeneous three-dimensional suspensions of hard spheres. We also found in our systems that the particle fluctuations relax only by self-diffusion for wave vectors where the static structure factor S(k)=1. This result is important for measurements of self-diffusion dynamics in three-dimensional systems by light scattering techniques.