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Int J Biol Macromol ; 269(Pt 1): 131993, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38705335

RESUMO

PhoX is a high-affinity phosphate binding protein, present in Xanthomonas citri, a phytopathogen responsible for the citrus canker disease. Performing molecular dynamics simulations and different types of computational analyses, we study the molecular mechanisms at play in relation to phosphate binding, revealing the global functioning of the protein: PhoX naturally oscillates along its global normal modes, which allow it to explore both bound and unbound conformations, eventually attracting a nearby negative phosphate ion to the highly positive electrostatic potential on its surface, particularly close to the binding pocket. There, several hydrogen bonds are formed with the two main domains of the structure. Phosphate creates, in this way, a strong bridge that connects the domains, keeping itself between them, in a tight closed conformation, explaining its high binding affinity.


Assuntos
Proteínas de Bactérias , Simulação de Dinâmica Molecular , Fosfatos , Xanthomonas , Fosfatos/metabolismo , Proteínas de Bactérias/metabolismo , Proteínas de Bactérias/química , Ligação Proteica , Proteínas de Ligação a Fosfato/metabolismo , Ligação de Hidrogênio , Sítios de Ligação , Eletricidade Estática
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