Sphingomonas clade and functional distribution with simulated climate change.

Microbes are essential for the functioning of all ecosystems, and as global warming and anthropogenic pollution threaten ecosystems, it is critical to understand how microbes respond to these changes. We investigated the climate response of Sphingomonas, a widespread gram-negative bacterial genus, during an 18-month microbial community reciprocal transplant experiment across a Southern California climate gradient. We hypothesized that after 18 months, the transplanted Sphingomonas clade and functional composition would correspond with site conditions and reflect the Sphingomonas composition of native communities. We extracted Sphingomonas sequences from metagenomic data across the gradient and assessed their clade and functional composition. Representatives of at least 12 major Sphingomonas clades were found at varying relative abundances along the climate gradient, and transplanted Sphingomonas clade composition shifted after 18 months. Site had a significant effect (PERMANOVA; P < 0.001) on the distribution of both Sphingomonas functional (R2 = 0.465) and clade composition (R2 = 0.400), suggesting that Sphingomonas composition depends on climate parameters. Additionally, for both Sphingomonas clade and functional composition, ordinations revealed that the transplanted communities shifted closer to the native Sphingomonas composition of the grassland site compared with the site they were transplanted into. Overall, our results indicate that climate and substrate collectively determine Sphingomonas clade and functional composition.IMPORTANCESphingomonas is the most abundant gram-negative bacterial genus in litter-degrading microbial communities of desert, grassland, shrubland, and forest ecosystems in Southern California. We aimed to determine whether Sphingomonas responds to climate change in the same way as gram-positive bacteria and whole bacterial communities in these ecosystems. Within Sphingomonas, both clade composition and functional genes shifted in response to climate and litter chemistry, supporting the idea that bacteria respond similarly to climate at different scales of genetic variation. This understanding of how microbes respond to perturbation across scales may aid in future predictions of microbial responses to climate change.

Impressive pan-genomic diversity of E. coli from a wild animal community near urban development reflects human impacts.

Human and domesticated animal waste infiltrates global freshwater, terrestrial, and marine environments, widely disseminating fecal microbes, antibiotics, and other chemical pollutants. Emerging evidence suggests that guts of wild animals are being invaded by our microbes, including Escherichia coli, which face anthropogenic selective pressures to gain antimicrobial resistance (AMR) and increase virulence. However, wild animal sources remain starkly under-represented among genomic sequence repositories. We sequenced whole genomes of 145 E. coli isolates from 55 wild and 13 domestic animal fecal samples, averaging 2 (ranging 1-7) isolates per sample, on a preserve imbedded in a human-dominated landscape in California Bay Area, USA, to assess AMR, virulence, and pan-genomic diversity. With single nucleotide polymorphism analyses we predict potential transmission routes. We illustrate the usefulness of E. coli to aid our understanding of and ability to surveil the emergence of zoonotic pathogens created by the mixing of human and wild bacteria in the environment.

Synthesis of hierarchical mesoporous cerium titanate brannerite and uranyl adsorption properties at pH 3.8.

Cerium titanates possessing brannerite structure are produced by employing soft and hard templates via sol-gel processing. Powders synthesized with various hard template sizes and template to brannerite weight ratios are composed of nanoscale 'building blocks' with size ∼20-30 nm and characterized on macro-, nano- and atomic scales. These polycrystalline oxide powders exhibit specific surface area up to ∼100 m2 g-1, pore volume ∼0.4 cm3 g-1, and uranyl adsorption capacity ∼0.221 mmol (53 mg) U per gram powder. Remarkably, the materials possess significant proportion of mesopores with 5-50 nm pores representing 84-98% of total pore volume, which facilitate fast accessibility of the adsorbate to the internal surfaces of the adsorbent with adsorbed uranyl reaching over 70% of the full capacity within 15 min of contact. These mesoporous cerium titanate brannerites synthesized by the soft chemistry route are highly homogenous, stable at least in 2 mol L-1 acidic or basic solution, and may attract attention for other applications like catalysis at high temperature.

Actinide and Lanthanide Adsorption onto Hierarchically Porous Carbons Beads: A High Surface Affinity for Pu.

Structured carbon adsorbents were prepared by carbonizing macroporous polyacrylonitrile beads whose pores were lined with a mesoporous phenolic resin. After activation, the beads were tested for minor actinide (Np and Am), major actinide (Pu and U) and lanthanide (Gd) adsorption in varying acidic media. The activation of the carbon with ammonium persulfate increased the surface adsorption of the actinides, while decreasing lanthanide adsorption. These beads had a pH region where Pu could be selectively extracted. Pu is one of the longest lived, abundant and most radiotoxic components of spent nuclear fuel and thus, there is an urgent need to increase its security of storage. As carbon has a low neutron absorption cross-section, these beads present an affordable, efficient and safe means for Pu separation from nuclear waste.

Removal of aluminium from aqueous solutions using PAN-based adsorbents: characterisation, kinetics, equilibrium and thermodynamic studies.

Economic adsorbents in bead form were fabricated and utilised for the adsorption of Al(3+) from aqueous solutions. Polyacrylonitrile (PAN) beads, PAN powder and the thermally treated PAN beads (250 °C/48 h/Ar and 600 °C/48 h/Ar-H2) were characterised using different techniques including Fourier transform infrared spectroscopy, X-ray diffraction, specific surface analysis (Brunauer-Emmett-Teller), thermogravimetric analysis as well as scanning electron microscopy. Effects of pH, contact time, kinetics and adsorption isotherms at different temperatures were investigated in batch mode experiments. Aluminium kinetic data best fit the Lagergren pseudo-second-order adsorption model indicating a one-step, surface-only, adsorption process with chemisorption being the rate limiting step. Equilibrium adsorption data followed a Langmuir adsorption model with fairly low monolayer adsorption capacities suitable for freshwater clean-up only. Various constants including thermodynamic constants were evaluated from the experimental results obtained at 20, 40 and 60 °C. Positive values of ΔH° indicated that the adsorption of Al(3+) onto all three adsorbents was endothermic with less energy input required for PAN powder compared to PAN beads and low-temperature thermally treated PAN. Negative ΔG° values indicated that the aluminium adsorption process was spontaneous for all adsorbents examined.

Hydrolytic stability of mesoporous zirconium titanate frameworks containing coordinating organic functionalities.

The hydrolytic stability of lanthanide and actinide selective mono- and polyphosphonate-functionalized mesoporous zirconium titanium oxide adsorbents has been investigated in nitric acid solutions. Hydrolytic degradation of the surfaces, as measured through the fractional loss of phosphorus and elements of the oxide framework, increased by more than an order of magnitude as the nitric acid concentration was increased from 0 to 2 mol/L. The unfunctionalized parent oxide suffered considerable dissolution in 2 mol/L acid over a period of 72 h. Under identical conditions, the fractional Zr and Ti release was reduced to 1 × 10(-2) for monophosphonate functionalized hybrids and reached as low as 1 × 10(-6) for trisphosphonate functionalized variants. The bisphosphonates showed intermediate values. The leaching of P, Zr and Ti was found to be incongruent with the Zr leaching to a lesser extent implying enhanced stability of the Zr-O-P bond. Quantitative analysis of the dissolution kinetics indicated a parabolic dissolution model with a rate constant in the range of 0.5-1.5 mg g(-1) min(-1/2) for the elemental leaching of P, Ti, and Zr. The leaching of Zr from the mesoporous matrix was relatively more complex than for the other elements with evidence of a leaching mechanism involving two processes. ToF-SIMS and DRIFT analysis demonstrated that after leaching in 2 M HNO3 for 24 h, a significant proportion of grafted ligands remained on the surface. The oxide functionalized with amino trismethylenephosphonic acid, which had previously shown excellent (153)Gd(3+) selectivity, was demonstrated to have outstanding stability, with low fractional elemental losses and preservation of mesoporous texture even after leaching for 24 h in 2 M HNO3. This suggests this particular hybrid to be worthy of additional study.

Uranyl-sorption properties of amorphous and crystalline TiO2/ZrO2 millimeter-sized hierarchically porous beads.

Hierarchically porous TiO(2)/ZrO(2) millimeter-sized beads were synthesized using a sol-gel templating technique, and investigated for suitability as radionuclide sorbents using uranyl as a radionuclide-representative probe. The bead properties were varied by altering either composition (22, 36, and 82 wt % Zr in the Ti/Zr composite) or calcination temperature (500 or 700 °C). Uranyl adsorption was higher for the crystalline beads (surface area: 52-59 m(2) g(-1)) than the amorphous beads (surface area: 95-247 m(2) g(-1)), reaching a maximum of 0.170 mmol g(-1) for the 22 wt % Zr sample. This was attributed to the higher surface hydroxyl density (OH nm(-2)), presence of limited microporosity, and larger mesopores in the crystalline beads. Mass transport properties of the crystalline beads were not compromised by the large bead diameter: sorption rates comparable to those reported for powders were achieved and rates were higher than exclusively mesoporous reported systems, thereby highlighting the importance of pore hierarchy in designing materials with improved kinetics. Chemical stability of the sorbent, an important property for processes involving corrosive effluents (e.g., radioactive waste), was also assessed. Crystalline beads displayed superior resistance against matrix leaching in HNO(3). Stability varied with composition: the 22 wt % Zr sample demonstrated the highest stability.

Extinction coefficient for red-shifted chlorophylls: chlorophyll d and chlorophyll f.

Both chlorophyll f and chlorophyll d are red-shifted chlorophylls in oxygenic photosynthetic organisms, which extend photon absorbance into the near infrared region. This expands the range of light that can be used to drive photosynthesis. Quantitative determination of chlorophylls is a crucial step in the investigation of chlorophyll-photosynthetic reactions in the field of photobiology and photochemistry. No methods have yet been worked out for the quantitative determination of chlorophyll f. There is also no method available for the precise quantitative determination of chlorophyll d although it was discovered in 1943. In order to obtain the extinction coefficients (ε) of chlorophyll f and chlorophyll d, the concentrations of chlorophylls were determined by Inductive Coupled Plasma Mass Spectrometry according to the fact that each chlorophyll molecule contains one magnesium (Mg) atom. Molar extinction coefficient ε(chl f) is 71.11×10(3)Lmol(-1)A(707nm)cm(-1) and ε(chl d) is 63.68×10(3)Lmol(-1)A(697nm)cm(-1) in 100% methanol. This article is part of a Special Issue entitled: Photosynthesis Research for Sustainability: from Natural to Artificial.

Monitoring bisphosphonate surface functionalization and acid stability of hierarchically porous titanium zirconium oxides.

To take advantage of the full potential of functionalized transition metal oxides, a well-understood nonsilane based grafting technique is required. The functionalization of mixed titanium zirconium oxides was studied in detail using a bisphosphonic acid, featuring two phosphonic acid groups with high surface affinity. The bisphosphonic acid employed was coupled to a UV active benzamide moiety in order to track the progress of the surface functionalization in situ. Using different material compositions, altering the pH environment, and looking at various annealing conditions, key features of the functionalization process were identified that consequently will allow for intelligent material design. Loading with bisphosphonic acid was highest on supports calcined at 650 °C compared to lower calcination temperatures: A maximum capacity of 0.13 mmol g(-1) was obtained and the adsorption process could be modeled with a pseudo-second-order rate relationship. Heating at 650 °C resulted in a phase transition of the mixed binary oxide to a ternary oxide, titanium zirconium oxide in the srilankite phase. This phase transition was crucial in order to achieve high loading of the bisphosphonic acid and enhanced chemical stability in highly acidic solutions. Due to the inert nature of phosphorus-oxygen-metal bonds, materials functionalized by bisphosphonic acids showed increased chemical stability compared to their nonfunctionalized counterparts in harshly acidic solutions. Leaching studies showed that the acid stability of the functionalized material was improved with a partially crystalline srilankite phase. The materials were characterized using nitrogen sorption, X-ray powder diffraction, and UV-vis spectroscopy; X-ray photoelectron spectroscopy was used to study surface coverage with the bisphosphonic acid molecules.

Hybrid inorganic-organic adsorbents Part 1: Synthesis and characterization of mesoporous zirconium titanate frameworks containing coordinating organic functionalities.

A series of functional hybrid inorganic-organic adsorbent materials have been prepared through postsynthetic grafting of mesoporous zirconium titanate xerogel powders using a range of synthesized and commercial mono-, bis-, and tris-phosphonic acids, many of which have never before been investigated for the preparation of hybrid phases. The hybrid materials have been characterized using thermogravimetric analysis, diffuse reflectance infrared (DRIFT) and 31P MAS NMR spectroscopic techniques and their adsorption properties studied using a 153Gd radiotracer. The highest level of surface functionalization (molecules/nm2) was observed for methylphosphonic acid (∼3 molecules/nm2). The level of functionalization decreased with an increase in the number of potential surface coordinating groups of the phosphonic acids. Spectral decomposition of the DRIFT and 31P MAS NMR spectra showed that each of the phosphonic acid molecules coordinated strongly to the metal oxide surface but that for the 1,1-bis-phosphonic acids and tris-phosphonic acids the coordination was highly variable resulting in a proportion of free or loosely coordinated phosphonic acid groups. Functionalization of a porous mixed metal oxide framework with the tris-methylenephosphonic acid (ATMP-ZrTi-0.33) resulted in a hybrid with the highest affinity for 153Gd3+ in nitric acid solutions across a wide range of acid concentrations. The ATMP-ZrTi-0.33 hybrid material extracted 153Gd3+ with a Kd value of 1×10(4) in 0.01 M HNO3 far exceeding that of the other hybrid phases. The unfunctionalized mesoporous mixed metal oxide had negligible affinity for Gd3+ (Kd<100) under identical experimental conditions. It has been shown that the presence of free or loosely coordinated phosphonic acid groups does not necessarily translate to affinity for 153Gd3+. The theoretical cation exchange capacity of the ATMP-ZrTi-0.33 hybrid phase for Gd3+ has been determined to be about 0.005 mmol/g in 0.01 M HNO3. This behavior and that of the other hybrid phases suggests that the surface-bound ATMP ligand functions as a chelating ligand toward 153Gd3+ under these acidic conditions.

One-pot preparation and uranyl adsorption properties of hierarchically porous zirconium titanium oxide beads using phase separation processes to vary macropore morphology.

A simple and engineering friendly one-step process has been used to prepare zirconium titanium mixed oxide beads with porosity on multiple length scales. In this facile synthesis, the bead diameter and the macroporosity can be conveniently controlled through minor alterations in the synthesis conditions. The precursor solution consisted of poly(acrylonitrile) dissolved in dimethyl sulfoxide to which was added block copolymer Pluronic F127 and metal alkoxides. The millimeter-sized spheres were fabricated with differing macropore dimensions and morphology through dropwise addition of the precursor solution into a gelation bath consisting of water (H(2)O beads) or liquid nitrogen (LN(2) beads). The inorganic beads obtained after calcination (550 °C in air) had surface areas of 140 and 128 m(2) g(-1), respectively, and had varied pore architectures. The H(2)O-derived beads had much larger macropores (5.7 µm) and smaller mesopores (6.3 nm) compared with the LN(2)-derived beads (0.8 µm and 24 nm, respectively). Pluronic F127 was an important addition to the precursor solution, as it resulted in increased surface area, pore volume, and compressive yield point. From nonambient XRD analysis, it was concluded that the zirconium and titanium were homogeneously mixed within the oxide. The beads were analyzed for surface accessibility and adsorption rate by monitoring the uptake of uranyl species from solution. The macropore diameter and morphology greatly impacted surface accessibility. Beads with larger macropores reached adsorption equilibrium much faster than the beads with a more tortuous macropore network.

Template synthesis and adsorption properties of hierarchically porous zirconium titanium oxides.

Hierarchical morphologies in metal oxides are advantageous for many applications, including controlled drug release, photocatalysis, catalysis, synthetic biomaterials, and adsorption and separation technologies. In this study, agarose gel has been used as a template to prepare zirconium titanium mixed oxide pellets with bimodal porosity. Sol-gel chemistry conducted within the agarose gel produced "coral-like" interconnected networks of oxide nanoparticles with controllable quantities of zirconium and titanium. The materials were characterized using N(2) sorption, extended X-ray absorption fine structure, X-ray diffraction, TEM, SEM, zeta potential, and thermogravimetric analysis (to measure surface hydroxyl group density). The oxides were then tested for the adsorption of vanadyl and vanadate to determine which Zr mole fraction exhibited the highest capacity and fastest kinetics. The material containing 25 mol % Zr exhibited the highest surface area (322 +/- 8 m(2)/g) of the compositions investigated and also displayed a superior adsorption rate and capacity. Vanadate adsorption occurred with faster kinetics than did vanadyl adsorption. A comparative study demonstrated that the macro/meso pore structure had improved transport properties over a monomodal mesopore structure of similar Zr/Ti composition. The faster vanadate adsorption kinetics is attributed to enhanced surface accessibility in a hierarchical material.

Mesoporous zirconium titanium oxides. Part 1: Porosity modulation and adsorption properties of xerogels.

A series of zirconium titanium oxide mesophases containing 33 atom % Zr have been prepared using carboxylic acids of different alkyl chain lengths (Cy ) from y=4-18 through organic-inorganic polymer phase segregation as the gel transition is approached. Thermal treatment of these transparent gels up to 450 degrees C eliminated the organic template, and domain coarsening occurred affording stable worm-hole mesoporous materials of homogeneous composition and pore diameters varying from about 3 to 4 nm in fine increments. With such materials, it was subsequently possible to precisely study the adsorption of vanadium oxo-anions and cations from aqueous solutions and, more particularly, probe the kinetics of intraparticle mass transport as a function of the associated pore dimension. The kinetics of mass transport through the pore systems was investigated using aqueous vanadyl (VO2+) and orthovanadate (VO3(OH)2-) probe species at concentrations ranging from 10 to 200 ppm (0.2 to 4 mmol/L) and pH values of 0 and 10.5, respectively. In the case of both of these vanadium species, the zirconium titanate mesophases displayed relatively slow kinetics, taking in excess of about 500 min to achieve maximum uptake. By using a pseudo-second-order rate law, it was possible to extract the instantaneous and overall rate of the adsorption processes and then relate these to the pore diameters. Both the instantaneous and overall rates of adsorption increased with increasing surface area and pore diameter over the studied pore size range. However, the equilibrium adsorption capacity increased linearly with pore diameter only for the higher concentrations and was independent of pore diameter for the lower concentration. These results have been interpreted using a model in which discrete adsorption occurs at low concentrations and is then followed by multilayer adsorption at higher concentration.