Genetic investigations on backfat thickness and body condition score in German Holstein cattle.

Up to now, little has been known about backfat thickness (BFT) in dairy cattle. The objective of this study was to investigate the lactation curve and genetic parameters for BFT as well as its relationship with body condition score (BCS) and milk yield (MKG). For this purpose, a dataset was analysed including phenotypic observations of 1929 German Holstein cows for BFT, BCS and MKG recorded on a single research dairy farm between September 2005 and December 2022. Additionally, pedigree and genomic information was available. Lactation curves were predicted and genetic parameters were estimated for all traits in first to third lactation using univariate random regression models. For BCS, lactation curves had nadirs at 94 DIM, 101 DIM and 107 DIM in first, second and third lactation. By contrast, trajectories of BFT showed lowest values later in lactation at 129 DIM, 117 DIM and 120 DIM in lactation numbers 1 to 3, respectively. Although lactation curves of BCS and BFT had similar shapes, the traits showed distinct sequence of curves for lactation number 2 and 3. Cows in third lactation had highest BCS, whereas highest BFT values were found for second parity animals. Average heritabilities were 0.315 ± 0.052, 0.297 ± 0.048 and 0.332 ± 0.061 for BCS in lactation number 1 to 3, respectively. Compared to that, BFT had considerably higher heritability in all lactation numbers with estimates ranging between 0.357 ± 0.028 and 0.424 ± 0.034. Pearson correlation coefficients between estimated breeding values for the 3 traits were negative between MKG with both BCS (r = -0.245 to -0.322) and BFT (r = -0.163 to -0.301). Correlation between traits BCS and BFT was positive and consistently high (r = 0.719 to 0.738). Overall, the results of this study suggest that BFT and BCS show genetic differences in dairy cattle, which might be due to differences in depletion and accumulation of body reserves measured by BFT and BCS. Therefore, routine recording of BFT on practical dairy farms could provide valuable information beyond BCS measurements and might be useful, for example, to better assess the nutritional status of cows.

Impact of inbreeding on production, fertility, and health traits in German Holstein dairy cattle utilizing various inbreeding estimators.

In dairy cattle production, it is important to understand how inbreeding affects production, fertility, and health traits. However, there is still limited use of genomic information to estimate inbreeding, despite advancements in genotyping technologies. To address this gap, we investigated the impact of inbreeding on German Holstein dairy cattle using both pedigree-based and genomic-based inbreeding estimators. We employed one method based on pedigree information (Fped) together with 6 genomic-based methods, including 3 GCTA estimators (Fhat1, Fhat2, Fhat3), VanRaden's first method (FVR1, with observed allele frequencies and FVR0.5 when allele frequencies are set to 0.5), and one based on runs of homozygosity (Froh). Data from 24,489 cows with both phenotypes and genotypes were used, with a pedigree including 232,780 animals born between 1970 and 2018. We analyzed the effects of inbreeding depression on production, fertility, and health traits separately, using single-trait linear animal models as well as threshold models to account for the binary nature of the health traits. For the health traits, we transformed solutions from the liability scale to a probability scale for easier interpretation. Our results showed that the mean inbreeding coefficients from all estimators ranged from -0.003 to 0.243, with negative values observed for most genomic-based methods. We found out that a 1% increase in inbreeding caused a depression ranging from 25.94 kg (Fhat1) to 40.62 kg (Fhat3), 1.18 kg (Fhat2) to 1.70 kg (Fhat3), 0.90 kg (Fhat2) to 1.45 kg (Froh and Fhat3), 0.19 (Fped) to 0.34 d (Fhat3) for 305 d milk yield, fat, protein, and calving interval respectively. The health traits showed slight changes when inbreeding was gradually increased by 5% with digital dermatitis showing rather a contrasting trend to that of mastitis which reduced the more an animal was inbred. Overall, our study highlights the importance of considering both pedigree-based and genomic-based inbreeding estimators when assessing the impact on inbreeding, emphasizing that not all inbreeding is harmful.

Effects of the Breeding Strategy Beef-on-Dairy at Animal, Farm and Sector Levels.

The decline in farm revenue due to volatile milk prices has led to an increase in the use of beef semen in dairy herds. While this strategy ("Beef-on-dairy" (BoD)) can have economic benefits, it can also lead to unintended consequences affecting animal welfare. Semen sale trends from breeding organizations depict increasing sales of beef semen across the globe. Calves born from such breeding strategies can perform better when compared to purebred dairy calves, especially in terms of meat quality and growth traits. The Beef-on-dairy strategy can lead to unintentional negative impacts including an increase in gestation length, and increased dystocia and stillbirth rates. Studies in this regard have found the highest gestation length for Limousin crossbred calves followed by calves from the Angus breed. This increase in gestation length can lead to economic losses ranging from 3 to 5 US$ per animal for each additional day. In terms of the growth performance of crossbred animals, literature studies are inconclusive due to the vast differences in farming structure across the regions. But almost all the studies agree regarding improvement in the meat quality in terms of color, fiber type, and intra-muscular fat content for crossbred animals. Utilization of genomic selection, and development of specialized Beef-on-dairy indexes for the sires, can be a viable strategy to make selection easier for the farmers.

Genetic analysis of production traits and body size measurements and their relationships with metabolic diseases in German Holstein cattle.

This study sheds light on the genetic complexity and interplay of production, body size, and metabolic health in dairy cattle. Phenotypes for body size-related traits from conformation classification (130,166 animals) and production (101,562 animals) of primiparous German Holstein cows were available. Additionally, 21,992, 16,641, and 7,096 animals were from herds with recordings of the metabolic diseases ketosis, displaced abomasum, and milk fever in first, second, and third lactation. Moreover, all animals were genotyped. Heritabilities of traits and genetic correlations between all traits were estimated and GWAS were performed. Heritability was between 0.240 and 0.333 for production and between 0.149 and 0.368 for body size traits. Metabolic diseases were lowly heritable, with estimates ranging from 0.011 to 0.029 in primiparous cows, from 0.008 to 0.031 in second lactation, and from 0.037 to 0.052 in third lactation. Production was found to have negative genetic correlations with body condition score (BCS; -0.279 to -0.343) and udder depth (-0.348 to -0.419). Positive correlations were observed for production and body depth (0.138-0.228), dairy character (DCH) (0.334-0.422), and stature (STAT) (0.084-0.158). In first parity cows, metabolic disease traits were unfavorably correlated with production, with genetic correlations varying from 0.111 to 0.224, implying that higher yielding cows have more metabolic problems. Genetic correlations of disease traits in second and third lactation with production in primiparous cows were low to moderate and in most cases unfavorable. While BCS was negatively correlated with metabolic diseases (-0.255 to -0.470), positive correlations were found between disease traits and DCH (0.269-0.469) as well as STAT (0.172-0.242). Thus, the results indicate that larger and sharper animals with low BCS are more susceptible to metabolic disorders. Genome-wide association studies revealed several significantly associated SNPs for production and conformation traits, confirming previous findings from literature. Moreover, for production and conformation traits, shared significant signals on Bos taurus autosome (BTA) 5 (88.36 Mb) and BTA 6 (86.40 to 87.27 Mb) were found, implying pleiotropy. Additionally, significant SNPs were observed for metabolic diseases on BTA 3, 10, 14, 17, and 26 in first lactation and on BTA 2, 6, 8, 17, and 23 in third lactation. Overall, this study provides important insights into the genetic basis and interrelations of relevant traits in today's Holstein cattle breeding programs, and findings may help to improve selection decisions.

Application of a Bio-Economic Model to Demonstrate the Importance of Health Traits in Herd Management of Lithuanian Dairy Breeds.

Assessing the economic importance of traits is crucial for delivering appropriate breeding goals in dairy cattle breeding. The aim of the present study was to calculate economic values (EV) and assign the importance of health traits for three dairy cattle breeds: Lithuanian Black-and-White open population (LBW), Lithuanian Red open population (LR) and Lithuanian Red old genotype (LROG). The EV estimation was carried out using a stochastic bio-economic model SimHerd, which allows the simulation of the expected monetary gain of dairy herds. The simulation model was calibrated for LBW, LR and LROG breeds, taking into account breed-specific phenotypic and economic data. For each trait, two scenarios were simulated with a respective trait at different phenotypic levels. To obtain the EVs, the scenarios were compared with each other in terms of their economic outcomes. In order to avoid the double counting of the effects, the output results were corrected using a multiple regression analysis with mediator variables. The EVs were derived for the traits related to production ECM (energy-corrected milk), fertility, calving traits, calf survival, cow survival and direct health. To demonstrate the importance of health traits in herd management, we provided reliable EVs estimates for functional traits related to herd health. The highest EV for direct health traits, caused by an increase in of 1 percentage point, were those found for mastitis (EUR 1.73 to EUR 1.82 per cow-year) and lameness (EUR 1.07 to EUR 1.27 per cow-year). The total costs per case of ketosis, milk fever and metritis ranged from EUR 1.01 to EUR 1.30, EUR 1.14 to EUR 1.26 and EUR 0.95 to EUR 1.0, respectively. The highest economic values of dystocia were estimated for LROG (EUR -1.32), slightly lower for LBW (EUR -1.31) and LR (EUR -1.23). The results of this study show the importance of health traits to the economic features of cattle herd selection of new breeding goal and this would improve the herd health. The economic evaluation of the functional traits analyzed in this study indicated the significant economic importance of the functional traits in Lithuanian dairy cattle breeds.

Short- and long-term consequences of collaboration between Northern European Red dairy and dual-purpose cattle.

In Northern European countries, a great variety of Red cattle populations exists which can be broadly categorized in two groups: specialized dairy and dual-purpose breeds. Collaboration between these breeds (i.e. the exchange of sires across breeds) can be beneficial but is limited so far. The aim of this study was to demonstrate and evaluate consequences of collaboration between Red breeds using stochastic simulations. Two breeding lines (dairy type and dual purpose) were simulated. As a special aspect of this study, differences in genetic levels of breeding traits (milk production, beef production, mastitis resistance, fertility, feed efficiency) have been taken into account. Various scenarios were investigated where across-breed selection was either restricted or allowed and with different correlations between breeding goals in the two lines. The results of this study were influenced by the different genetic levels in breeding traits only in the first years of simulation. In the long run, the breed differences did not affect the degree of collaboration between lines. When the correlation between breeding goals was close to unity, the selection of external bulls was highly beneficial in terms of genetic gain and total monetary gain. Additionally, the lowest rate of inbreeding was found in that case. With decreasing correlations between environments, degree of cooperation between lines rapidly terminated and lines operated individually. In last years of simulation, cooperation was only found when the correlation between breeding goals was close to unity. From a long-term perspective, the exchange of breeding sires across lines also caused negative effects. In the dual-purpose line, deterioration of genetic gain in mastitis resistance and fertility was observed. Additionally, breeding lines genetically converged, which decreased genetic diversity. Collectively, short-term benefits and long-term negative effects have to be reconciled if collaboration between Red breeds in Northern Europe is to be pursued.

Assessing the genetic background and genomic relatedness of red cattle populations originating from Northern Europe.

BACKGROUND: Local cattle breeds need special attention, as they are valuable reservoirs of genetic diversity. Appropriate breeding decisions and adequate genomic management of numerically smaller populations are required for their conservation. At this point, the analysis of dense genome-wide marker arrays provides encompassing insights into the genomic constitution of livestock populations. We have analyzed the genetic characterization of ten cattle breeds originating from Germany, The Netherlands and Denmark belonging to the group of red dairy breeds in Northern Europe. The results are intended to provide initial evidence on whether joint genomic breeding strategies of these populations will be successful. RESULTS: Traditional Danish Red and Groningen White-Headed were the most genetically differentiated breeds and their populations showed the highest levels of inbreeding. In contrast, close genetic relationships and shared ancestry were observed for the populations of German Red and White Dual-Purpose, Dutch Meuse-Rhine-Yssel, and Dutch Deep Red breeds, reflecting their common histories. A considerable amount of gene flow from Red Holstein to German Angler and to German Red and White Dual-Purpose was revealed, which is consistent with frequent crossbreeding to improve productivity of these local breeds. In Red Holstein, marked genomic signatures of selection were reported on chromosome 18, suggesting directed selection for important breeding goal traits. Furthermore, tests for signatures of selection between Red Holstein, Red and White Dual-Purpose, and Meuse-Rhine-Yssel uncovered signals for all investigated pairs of populations. The corresponding genomic regions, which were putatively under different selection pressures, harboured various genes which are associated with traits such as milk and beef production, mastitis and female fertility. CONCLUSIONS: This study provides comprehensive knowledge on the genetic constitution and genomic connectedness of divergent red cattle populations in Northern Europe. The results will help to design and optimize breeding strategies. A joint genomic evaluation including some of the breeds studied here seems feasible.