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1.
Plant Biol (Stuttg) ; 17 Suppl 1: 59-65, 2015 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-24989135

RESUMO

Despite rapid doubling time, simple architecture and ease of metabolic labelling, a lack of genetic tools in the Lemnaceae (duckweed) has impeded the full implementation of this organism as a model for biological research. Here, we present technologies to facilitate high-throughput genetic studies in duckweed. We developed a fast and efficient method for producing Lemna minor stable transgenic fronds via Agrobacterium-mediated transformation and regeneration from tissue culture. Additionally, we engineered an artificial microRNA (amiRNA) gene silencing system. We identified a Lemna gibba endogenous miR166 precursor and used it as a backbone to produce amiRNAs. As a proof of concept we induced the silencing of CH42, a magnesium chelatase subunit, using our amiRNA platform. Expression of CH42 in transgenic L. minor fronds was significantly reduced, which resulted in reduction of chlorophyll pigmentation. The techniques presented here will enable tackling future challenges in the biology and biotechnology of Lemnaceae.


Assuntos
Araceae/genética , Inativação Gênica , MicroRNAs/metabolismo , Transformação Genética , Sequência de Bases , DNA Bacteriano/genética , Regulação para Baixo/genética , Regulação da Expressão Gênica de Plantas , Proteínas de Fluorescência Verde/metabolismo , MicroRNAs/genética , Dados de Sequência Molecular , Mutagênese Insercional/genética , Fenótipo , Plantas Geneticamente Modificadas , Reação em Cadeia da Polimerase , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Regeneração
2.
Nat Commun ; 5: 3311, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24548928

RESUMO

The subfamily of the Lemnoideae belongs to a different order than other monocotyledonous species that have been sequenced and comprises aquatic plants that grow rapidly on the water surface. Here we select Spirodela polyrhiza for whole-genome sequencing. We show that Spirodela has a genome with no signs of recent retrotranspositions but signatures of two ancient whole-genome duplications, possibly 95 million years ago (mya), older than those in Arabidopsis and rice. Its genome has only 19,623 predicted protein-coding genes, which is 28% less than the dicotyledonous Arabidopsis thaliana and 50% less than monocotyledonous rice. We propose that at least in part, the neotenous reduction of these aquatic plants is based on readjusted copy numbers of promoters and repressors of the juvenile-to-adult transition. The Spirodela genome, along with its unique biology and physiology, will stimulate new insights into environmental adaptation, ecology, evolution and plant development, and will be instrumental for future bioenergy applications.


Assuntos
Araceae/crescimento & desenvolvimento , Araceae/genética , Genoma de Planta/genética , Água Doce , Dados de Sequência Molecular
3.
Chem Commun (Camb) ; (21): 2406-7, 2004 Nov 07.
Artigo em Inglês | MEDLINE | ID: mdl-15514788

RESUMO

Substrate-free Delta9-18:0-acyl carrier protein desaturase (abbreviated to Des)[E.C. # 1.14.99.6] was 2-electron reduced with E'0=-0.03 +-0.01 V; the presence of spinach ferredoxin (SpFd) induces an additional 1-electron reduction wave at E'0=-0.21 +-0.02 V, which shifts by 0.106 V upon substrate binding.


Assuntos
Ácidos Graxos Dessaturases/química , Ferredoxinas/química , Oxigenases de Função Mista/química , Proteínas de Plantas/química , Eletroquímica , Elétrons , Oxirredução , Solubilidade
4.
Proc Natl Acad Sci U S A ; 98(16): 9448-53, 2001 Jul 31.
Artigo em Inglês | MEDLINE | ID: mdl-11481500

RESUMO

Salicylic acid (SA) plays an important role in activating various plant defense responses, including expression of the pathogenesis-related (PR) genes and systemic acquired resistance. A critical positive regulator of the SA signaling pathway in Arabidopsis is encoded by the NPR1 gene. However, there is growing evidence that NPR1-independent pathways can also activate PR expression and disease resistance. To elucidate the components associated with NPR1-independent defense signaling, we isolated a suppressor of the npr1-5 allele, designated ssi2. The recessive ssi2 mutation confers constitutive PR gene expression, spontaneous lesion formation, and enhanced resistance to Peronospora parasitica. In contrast, a subset of defense responses regulated by the jasmonic acid (JA) signaling pathway, including expression of the defensin gene PDF1.2 and resistance to Botrytis cinerea, is impaired in ssi2 plants. With the use of a map-based approach, the SSI2 gene was cloned and shown to encode a stearoyl-ACP desaturase (S-ACP DES). S-ACP DES is an archetypical member of a family of soluble fatty acid (FA) desaturases; these enzymes play an important role in regulating the overall level of desaturated FAs in the cell. The activity of mutant S-ACP DES enzyme was reduced 10-fold, resulting in elevation of the 18:0 FA content in ssi2 plants. Because reduced S-ACP DES activity leads to the induction of certain defense responses and the inhibition of others, we propose that a FA-derived signal modulates crosstalk between different defense signaling pathways.


Assuntos
Proteínas de Arabidopsis , Arabidopsis/metabolismo , Ácidos Graxos Dessaturases/metabolismo , Proteínas de Plantas , Transdução de Sinais , Sequência de Aminoácidos , Arabidopsis/enzimologia , Sequência de Bases , Clonagem Molecular , Ciclopentanos/metabolismo , Primers do DNA , Ácidos Graxos Dessaturases/química , Ácidos Graxos Dessaturases/genética , Ácidos Graxos/metabolismo , Cromatografia Gasosa-Espectrometria de Massas , Dados de Sequência Molecular , Oxilipinas , Homologia de Sequência de Aminoácidos
5.
J Biol Chem ; 276(24): 21500-5, 2001 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-11294879

RESUMO

Six amino acid locations in the soluble castor Delta(9)-18:0-acyl carrier protein (ACP) desaturase were identified that can affect substrate specificity. Combinatorial saturation mutagenesis of these six amino acids, in conjunction with selection, using an unsaturated fatty acid auxotroph system, led to the isolation of variants with up to 15-fold increased specific activity toward 16-carbon substrates. The most improved mutant, com2, contained two substitutions (T117R/G188L) common to five of the 19 complementing variants subjected to further analysis. These changes, when engineered into otherwise wild-type 18:0-ACP desaturase to make mutant 5.2, produced a 35-fold increase in specific activity with respect to 16-carbon substrates. Kinetic analysis revealed changes in both k(cat) and K(m) that result in an 82-fold improvement in specificity factor for 16-carbon substrate compared with wild-type enzyme. Improved substrate orientation apparently compensated for loss of binding energy that results from the loss of desolvation energy for 16-carbon substrates. Mutant 5.2 had specific activity for 16-carbon substrates 2 orders of magnitude higher than those of known natural 16-carbon specific desaturases. These data support the hypothesis that it should be possible to reengineer archetypal enzymes to achieve substrate specificities characteristic of recently evolved enzymes while retaining the desired stability and/or turnover characteristics of a parental paralog.


Assuntos
Oxigenases de Função Mista/química , Oxigenases de Função Mista/metabolismo , Plantas Tóxicas , Ricinus communis/enzimologia , Substituição de Aminoácidos , Técnicas de Química Combinatória , Primers do DNA , Escherichia coli/enzimologia , Escherichia coli/genética , Ácidos Graxos/química , Ácidos Graxos/metabolismo , Teste de Complementação Genética , Variação Genética , Cinética , Oxigenases de Função Mista/genética , Modelos Moleculares , Mutagênese Sítio-Dirigida , Mutação Puntual , Estrutura Secundária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Especificidade por Substrato
6.
Proc Natl Acad Sci U S A ; 97(22): 12350-5, 2000 Oct 24.
Artigo em Inglês | MEDLINE | ID: mdl-11027301

RESUMO

We demonstrate that naturally occurring C(14) and C(16)-specific acyl-acyl carrier protein (ACP) desaturases from plants can complement the unsaturated fatty acid (UFA) auxotrophy of an Escherichia coli fabA/fadR mutant. Under the same growth conditions, C(18)-specific delta(9)-stearoyl (18:0)-ACP desaturases are unable to complement the UFA auxotrophy. This difference most likely results from the presence of sufficient substrate pools of C(14) and C(16) acyl-ACPs but a relative lack of C(18) acyl-ACP pools in E. coli to support the activities of the plant fatty acid desaturase. Based on this, a substrate-dependent selection system was devised with the use of the E. coli UFA auxotroph to isolate mutants of the castor delta(9)-18:0-ACP desaturase that display enhanced specificity for C(14) and C(16) acyl-ACPs. Using this selection system, a number of desaturase variants with altered substrate specificities were isolated from pools of randomized mutants. These included several G188L mutant isolates, which displayed a 15-fold increase in specific activity with 16:0-ACP relative to the wild-type castor delta(9)-18:0-ACP desaturase. Expression of this mutant in Arabidopsis thaliana resulted in the accumulation of unusual monounsaturated fatty acids to amounts of >25% of the seed oil. The bacterial selection system described here thus provides a rapid means of isolating variant fatty acid desaturase activities for modification of seed oil composition.


Assuntos
Óleo de Rícino/metabolismo , Ácidos Graxos Dessaturases/genética , Teste de Complementação Genética , Sementes/metabolismo , Arabidopsis/genética , Sequência de Bases , Primers do DNA , Escherichia coli/genética , Ácidos Graxos Dessaturases/metabolismo , Engenharia Genética , Mutagênese , Especificidade por Substrato
7.
Curr Opin Plant Biol ; 3(3): 243-8, 2000 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-10837269

RESUMO

A combination of classical and powerful new combinatorial genetic techniques allows the redesign of enzyme activities and creation of proteins that are tailored to have specific properties. These technologies have far-reaching consequences for the future design of crop plants and the storage compounds within them.


Assuntos
Plantas/genética , Engenharia de Proteínas , Evolução Molecular Direcionada , Proteínas de Plantas/genética
8.
Protein Expr Purif ; 18(3): 355-60, 2000 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-10733890

RESUMO

Acyl-acyl carrier protein synthase (Aas) is widely used to synthesize thioester adducts of fatty acids between 8 and 18 carbons in length enzymatically to the phosphopantetheine group of acyl carrier protein. The enzyme is an 80.6-kDa inner membrane protein that functions in vivo as a 2-acylglycerophosphoethanolamine acyltransferase. The E. coli aas open reading frame was inserted into the expression plasmid pET28a so that, upon expression, a 21-amino-acid extension containing 6 consecutive histidine residues was added to the carboxyl terminus. The plasmid was designated pAasH. The activity of Aas in membranes was assessed from several cell lines. Membranes from the commonly used host line BL21(DE3) containing pAasH accumulated 30-fold and 38-fold more Aas activity than membranes from BL21(DE3) cells lacking the plasmid, when induced with isopropyl beta-d-thiogalactopyranoside (IPTG) or lactose, respectively. When pAasH was expressed under IPTG induction in cell line C41(DE3), a previously described cell line selected to enhance the expression of membrane proteins, Aas levels accumulated to 135-fold higher levels than in the cell line lacking the plasmid. Functional Aas can be isolated from either BL21(DE3) or C41(DE3) cell lines by differential centrifugation, followed by detergent extraction with Triton X-100 and nickel nitrilotriacetic acid affinity chromatography. The overexpression of Aas in cell line C41(DE3) is noteworthy compared to cell line BL21(DE3) because it results in a 3- to 4-fold higher accumulation of active enzyme in the membrane fraction and a lower proportion of inactive protein in the inclusion body.


Assuntos
Escherichia coli/enzimologia , Proteínas de Membrana/isolamento & purificação , Proteínas Recombinantes de Fusão/isolamento & purificação , Transferases (Outros Grupos de Fosfato Substituídos)/isolamento & purificação , Linhagem Celular , Eletroforese em Gel de Poliacrilamida , Escherichia coli/química , Escherichia coli/genética , Histidina/química , Proteínas de Membrana/química , Proteínas de Membrana/genética , Proteínas de Membrana/metabolismo , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Transferases (Outros Grupos de Fosfato Substituídos)/química , Transferases (Outros Grupos de Fosfato Substituídos)/genética , Transferases (Outros Grupos de Fosfato Substituídos)/metabolismo
9.
Science ; 282(5392): 1315-7, 1998 Nov 13.
Artigo em Inglês | MEDLINE | ID: mdl-9812895

RESUMO

Higher plants exhibit extensive diversity in the composition of seed storage fatty acids. This is largely due to the presence of various combinations of double or triple bonds and hydroxyl or epoxy groups, which are synthesized by a family of structurally similar enzymes. As few as four amino acid substitutions can convert an oleate 12-desaturase to a hydroxylase and as few as six result in conversion of a hydroxylase to a desaturase. These results illustrate how catalytic plasticity of these diiron enzymes has contributed to the evolution of the chemical diversity found in higher plants.


Assuntos
Ácidos Graxos Dessaturases/metabolismo , Ácidos Graxos Insaturados/metabolismo , Ácidos Graxos/metabolismo , Oxigenases de Função Mista/metabolismo , Plantas/enzimologia , Substituição de Aminoácidos , Arabidopsis/enzimologia , Arabidopsis/genética , Sítios de Ligação , Catálise , Ácidos Graxos Dessaturases/química , Ácidos Graxos Dessaturases/genética , Genes de Plantas , Hidroxiácidos/metabolismo , Hidroxilação , Ácido Linoleico/metabolismo , Oxigenases de Função Mista/química , Oxigenases de Função Mista/genética , Mutagênese Sítio-Dirigida , Ácido Oleico/metabolismo , Oxirredutases atuantes sobre Doadores de Grupo CH-CH , Proteínas de Plantas , Plantas/genética , Plantas Geneticamente Modificadas , Proteínas Recombinantes/metabolismo , Ácidos Ricinoleicos/metabolismo
10.
Plant Physiol ; 117(2): 593-8, 1998 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-9625712

RESUMO

Cat's claw (Doxantha unguis-cati L.) vine accumulates nearly 80% palmitoleic acid (16:1Delta9) plus cis-vaccenic acid (18:1Delta11) in its seed oil. To characterize the biosynthetic origin of these unusual fatty acids, cDNAs for acyl-acyl carrier protein (acyl-ACP) desaturases were isolated from developing cat's claw seeds. The predominant acyl-ACP desaturase cDNA identified encoded a polypeptide that is closely related to the stearoyl (Delta9-18:0)-ACP desaturase from castor (Ricinis communis L.) and other species. Upon expression in Escherichia coli, the cat's claw polypeptide functioned as a Delta9 acyl-ACP desaturase but displayed a distinct substrate specificity for palmitate (16:0)-ACP rather than stearate (18:0)-ACP. Comparison of the predicted amino acid sequence of the cat's claw enzyme with that of the castor Delta9-18:0-ACP desaturase suggested that a single amino acid substitution (L118W) might account in large part for the differences in substrate specificity between the two desaturases. Consistent with this prediction, conversion of leucine-118 to tryptophan in the mature castor Delta9-18:0-ACP desaturase resulted in an 80-fold increase in the relative specificity of this enzyme for 16:0-ACP. The alteration in substrate specificity observed in the L118W mutant is in agreement with a crystallographic model of the proposed substrate-binding pocket of the castor Delta9-18:0-ACP desaturase.


Assuntos
Oxigenases de Função Mista/química , Oxigenases de Função Mista/metabolismo , Plantas/enzimologia , Sementes/enzimologia , Sequência de Aminoácidos , Substituição de Aminoácidos , Clonagem Molecular , DNA Complementar , Euphorbiaceae/enzimologia , Oxigenases de Função Mista/biossíntese , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Desenvolvimento Vegetal , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Especificidade por Substrato
11.
Proc Natl Acad Sci U S A ; 94(10): 4872-7, 1997 May 13.
Artigo em Inglês | MEDLINE | ID: mdl-9144157

RESUMO

Acyl-acyl carrier protein (ACP) desaturases introduce double bonds at specific positions in fatty acids of defined chain lengths and are one of the major determinants of the monounsaturated fatty acid composition of vegetable oils. Mutagenesis studies were conducted to determine the structural basis for the substrate and double bond positional specificities displayed by acyl-ACP desaturases. By replacement of specific amino acid residues in a Delta6-palmitoyl (16:0)-ACP desaturase with their equivalents from a Delta9-stearoyl (18:0)-ACP desaturase, mutant enzymes were identified that have altered fatty acid chain-length specificities or that can insert double bonds into either the Delta6 or Delta9 positions of 16:0- and 18:0-ACP. Most notably, by replacement of five amino acids (A181T/A200F/S205N/L206T/G207A), the Delta6-16:0-ACP desaturase was converted into an enzyme that functions principally as a Delta9-18:0-ACP desaturase. Many of the determinants of fatty acid chain-length specificity in these mutants are found in residues that line the substrate binding channel as revealed by x-ray crystallography of the Delta9-18:0-ACP desaturase. The crystallographic model of the active site is also consistent with the diverged activities associated with naturally occurring variant acyl-ACP desaturases. In addition, on the basis of the active-site model, a Delta9-18:0-ACP desaturase was converted into an enzyme with substrate preference for 16:0-ACP by replacement of two residues (L118F/P179I). These results demonstrate the ability to rationally modify acyl-ACP desaturase activities through site-directed mutagenesis and represent a first step toward the design of acyl-ACP desaturases for the production of novel monounsaturated fatty acids in transgenic oilseed crops.


Assuntos
Oxigenases de Função Mista/química , Oxigenases de Função Mista/metabolismo , Plantas/enzimologia , Sequência de Aminoácidos , Animais , Sequência de Bases , Clonagem Molecular , Primers do DNA , Escherichia coli , Cinética , Oxigenases de Função Mista/isolamento & purificação , Modelos Moleculares , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Óleos de Plantas , Mutação Puntual , Reação em Cadeia da Polimerase , Conformação Proteica , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/isolamento & purificação , Proteínas Recombinantes de Fusão/metabolismo
12.
Plant Mol Biol ; 33(6): 1105-10, 1997 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-9154992

RESUMO

A cDNA for a structurally variant acyl-acyl carrier protein (ACP) desaturase was isolated from milkweed (Asclepias syriaca) seed, a tissue enriched in palmitoleic (16:1delta9)* and cis-vaccenic (18:1delta11) acids. Extracts of Escherichia coli that express the milkweed cDNA catalyzed delta9 desaturation of acyl-ACP substrates, and the recombinant enzyme exhibited seven- to ten-fold greater specificity for palmitoyl (16:0)-ACP and 30-fold greater specificity for myristoyl (14:0)-ACP than did known delta9-stearoyl (18:0)-ACP desaturases. Like other variant acyl-ACP desaturases reported to date, the milkweed enzyme contains fewer amino acids near its N-terminus compared to previously characterized delta9-18:0-ACP desaturases. Based on the activity of an N-terminal deletion mutant of a delta9-18:0-ACP desaturase, this structural feature likely does not account for differences in substrate specificities.


Assuntos
Proteína de Transporte de Acila/metabolismo , Oxigenases de Função Mista/metabolismo , Plantas/enzimologia , Sequência de Aminoácidos , DNA Complementar/análise , DNA de Plantas/análise , Escherichia coli/genética , Ácidos Graxos Monoinsaturados/metabolismo , Oxigenases de Função Mista/química , Oxigenases de Função Mista/genética , Dados de Sequência Molecular , Peso Molecular , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/metabolismo , Sementes/enzimologia , Homologia de Sequência de Aminoácidos , Especificidade por Substrato
13.
Proc Natl Acad Sci U S A ; 94(7): 2981-6, 1997 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-9096332

RESUMO

The gene encoding the alkane omega-hydroxylase (AlkB; EC 1.14.15.3) from Pseudomonas oleovorans was expressed in Escherichia coli. The integral-membrane protein was purified as nearly homogeneous protein vesicles by differential ultracentrifugation and HPLC cation exchange chromatography without the detergent solubilization normally required for membrane proteins. Purified AlkB had specific activity of up to 5 units/mg for octane-dependent NADPH consumption. Mössbauer studies of AlkB showed that it contains an exchange-coupled dinuclear iron cluster of the type found in soluble diiron proteins such as hemerythrin, ribonucleotide reductase, methane monooxygenase, stearoyl-acyl carrier protein (ACP) delta9 desaturase, rubrerythrin, and purple acid phosphatase. In the as-isolated enzyme, the cluster contains an antiferromagnetically coupled pair of high-spin Fe(III) sites, with an occupancy of up to 0.9 cluster per AlkB. The diferric cluster could be reduced by sodium dithionite, and the diferrous state was found to be stable in air. When both O2 and substrate (octane) were added, however, the diferrous cluster was quantitatively reoxidized, proving that the diiron cluster occupies the active site. Mossbauer data on reduced AlkB are consistent with a cluster coordination rich in nitrogen-containing ligands. New sequence analyses indicate that at least 11 nonheme integral-membrane enzymes, including AlkB, contain the 8-histidine motif required for catalytic activity in stearoyl-CoA desaturase. Based on our Mössbauer studies of AlkB, we propose that the integral-membrane enzymes in this family contain diiron clusters. Because these enzymes catalyze a diverse range of oxygenation reactions, this proposal suggests a greatly expanded role for diiron clusters in O2-activation biochemistry.


Assuntos
Ferro/química , Proteínas de Membrana/química , Oxigenases de Função Mista/química , Oxigenases de Função Mista/genética , Pseudomonas/enzimologia , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Espectroscopia de Mossbauer
14.
EMBO J ; 15(16): 4081-92, 1996 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-8861937

RESUMO

The three-dimensional structure of recombinant homodimeric delta9 stearoyl-acyl carrier protein desaturase, the archetype of the soluble plant fatty acid desaturases that convert saturated to unsaturated fatty acids, has been determined by protein crystallographic methods to a resolution of 2.4 angstroms. The structure was solved by a combination of single isomorphous replacement, anomalous contribution from the iron atoms to the native diffraction data and 6-fold non-crystallographic symmetry averaging. The 363 amino acid monomer consists of a single domain of 11 alpha-helices. Nine of these form an antiparallel helix bundle. The enzyme subunit contains a di-iron centre, with ligands from four of the alpha-helices in the helix bundle. The iron ions are bound in a highly symmetric environment, with one of the irons forming interactions with the side chains of E196 and H232 and the second iron with the side chains of E105 and H146. Two additional glutamic acid side chains, from E143 and E229, are within coordination distance to both iron ions. A water molecule is found within the second coordination sphere from the iron atoms. The lack of electron density corresponding to a mu-oxo bridge, and the long (4.2 angstroms) distance between the iron ions suggests that this probably represents the diferrous form of the enzyme. A deep channel which probably binds the fatty acid extends from the surface into the interior of the enzyme. Modelling of the substrate, stearic acid, into this channel places the delta9 carbon atom in the vicinity of one of the iron ions.


Assuntos
Ácidos Graxos Dessaturases/química , Oxigenases de Função Mista/química , Modelos Moleculares , Proteínas de Plantas/química , Plantas Tóxicas , Conformação Proteica , Ricinus communis/enzimologia , Sequência de Aminoácidos , Proteínas de Bactérias/química , Sítios de Ligação , Cristalografia por Raios X , Ferro/química , Dados de Sequência Molecular , Oxigenases/química , Proteínas Recombinantes/química , Ribonucleotídeo Redutases/química , Alinhamento de Sequência , Estearoil-CoA Dessaturase
15.
Proc Natl Acad Sci U S A ; 93(16): 8771-5, 1996 Aug 06.
Artigo em Inglês | MEDLINE | ID: mdl-8710947

RESUMO

Anacardic acids, a class of secondary compounds derived from fatty acids, are found in a variety of dicotyledonous families. Pest resistance (e.g., spider mites and aphids) in Pelargonium xhortorum (geranium) is associated with high levels (approximately 81%) of unsaturated 22:1 omega 5 and 24:1 omega 5 anacardic acids in the glandular trichome exudate. A single dominant locus controls the production of these omega 5 anacardic acids, which arise from novel 16:1 delta 11 and 18:1 delta 13 fatty acids. We describe the isolation and characterization of a cDNA encoding a unique delta 9 14:0-acyl carrier protein fatty acid desaturase. Several lines of evidence indicated that expression of this desaturase leads to the production of the omega 5 anacardic acids involved in pest resistance. First, its expression was found in pest-resistant, but not suspectible, plants and its expression followed the production of the omega 5 anacardic acids in segregating populations. Second, its expression and the occurrence of the novel 16:1 delta 11 and 18:1 delta 13 fatty acids and the omega 5 anacardic acids were specific to tall glandular trichomes. Third, assays of the recombinant protein demonstrated that this desaturase produced the 14:1 delta 9 fatty acid precursor to the novel 16:1 delta 11 and 18:1 delta 13 fatty acids. Based on our genetic and biochemical studies, we conclude that expression of this delta 9 14:0-ACP desaturase gene is required for the production of omega 5 anacardic acids that have been shown to be necessary for pest resistance in geranium.


Assuntos
Ácidos Anacárdicos , Ácidos Graxos Dessaturases/genética , Oxigenases de Função Mista/genética , Plantas/metabolismo , Salicilatos/metabolismo , Sequência de Aminoácidos , Cromatografia Gasosa , DNA Complementar/genética , Escherichia coli , Ácidos Graxos Insaturados/biossíntese , Expressão Gênica , Genes de Plantas , Imunidade Inata/genética , Imunidade Inata/fisiologia , Dados de Sequência Molecular , Plantas/genética , RNA Mensageiro/genética , Proteínas Recombinantes
16.
J Bacteriol ; 178(3): 936-9, 1996 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-8550538

RESUMO

Expression of a plant delta 6-palmitoyl (16:0)-acyl carrier protein desaturase in Escherichia coli resulted in the accumulation of the novel monounsaturated fatty acids delta 6-hexadecenoic acid (16:1 delta 6) and delta 8-octadecenoic acid. Amounts of 16:1 delta 6 accumulated by E. coli were increased more than twofold by the expression of a plant ferredoxin together with the delta 6-16:0-acyl carrier protein desaturase.


Assuntos
Escherichia coli/metabolismo , Ácidos Graxos/metabolismo , Ferredoxinas/fisiologia , Oxigenases de Função Mista/fisiologia , Plantas/metabolismo , Sequência de Bases , Escherichia coli/química , Ácidos Graxos/análise , Dados de Sequência Molecular
17.
Plant Cell ; 7(10): 1713-22, 1995 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-7580259

RESUMO

A cDNA representing the plastid-encoded homolog of the prokaryotic ATP-dependent protease ClpP was amplified by reverse transcription-polymerase chain reaction, cloned, and sequenced. ClpP and a previously isolated cDNA designated ClpC, encoding an ATPase related to proteins encoded by the ClpA/B gene family, were expressed in Escherichia coli. Antibodies directed against these recombinant proteins recognized proteins in a wide variety of organisms. N-terminal analysis of the Clp protein isolated from crude leaf extracts showed that the N-terminal methionine is absent from ClpP and that the transit peptide is cleaved from ClpC. A combination of chloroplast subfractionation and immunolocalization showed that in Arabidopsis, ClpP and ClpC localize to the stroma of the plastid. Immunoblot analyses indicated that ClpP and ClpC are constitutively expressed in all tissues of Arabidopsis at levels equivalent to those of E. coli ClpP and ClpA. ClpP, immunopurified from tobacco extracts, hydrolyzed N-succinyl-Leu-Tyr-amidomethylcoumarin, a substrate of E. coli ClpP. Purified recombinant ClpC facilitated the degradation of 3H-methylcasein by E. coli ClpP in an ATP-dependent fashion. This demonstrates that ClpC is a functional homolog of E. coli ClpA and not of ClpB or ClpX. These data represent the only in vitro demonstration of the activity of a specific ATP-dependent chloroplast protease reported to date.


Assuntos
Adenosina Trifosfatases/genética , Proteínas de Escherichia coli , Escherichia coli/genética , Proteínas de Choque Térmico/genética , Plantas/enzimologia , Plantas/genética , Plastídeos/genética , Serina Endopeptidases/genética , Proteases Dependentes de ATP , Adenosina Trifosfatases/imunologia , Sequência de Bases , Clonagem Molecular , DNA Complementar/genética , DNA de Plantas/genética , Endopeptidase Clp , Proteínas de Choque Térmico/imunologia , Imunoquímica , Dados de Sequência Molecular , Plantas/imunologia , Proteínas Recombinantes/genética , Proteínas Recombinantes/imunologia , Serina Endopeptidases/imunologia
18.
Biochemistry ; 34(34): 10910-7, 1995 Aug 29.
Artigo em Inglês | MEDLINE | ID: mdl-7662672

RESUMO

The Escherichia coli ATP-dependent caseinolytic protease (Clp) is composed of two distinct subunits; protease, ClpP, and ATPase, ClpA. Active ClpP has been overexpressed to approximately 50% of soluble protein in E. coli, and purified to homogeneity. Direct mass determination of individual particles using scanning transmission electron microscopy (STEM) yields a mean native molecular mass of 305 +/- 9 kDa for the ClpP oligomer, suggesting that it has a tetradecameric structure. Small-angle X-ray scattering (SAXS) curves were determined for ClpP in solution at concentrations of 1-10 mg/mL. A combination of STEM and SAXS data was used to derive a model for ClpP, comprising a cylindrical oligomer about 100 A in diameter and about 75 A in height with an axial pore about 32-36 A in diameter. The volume of the pore is estimated to be approximately 70,000 A3, similar in size to those found in chaperone proteins, and is large enough to accommodate unfolded polypeptide chains, although most globular folded proteins would be excluded.


Assuntos
Adenosina Trifosfatases/química , Proteínas de Escherichia coli , Escherichia coli/enzimologia , Serina Endopeptidases/química , Adenosina Trifosfatases/genética , Adenosina Trifosfatases/isolamento & purificação , Adenosina Trifosfatases/ultraestrutura , Trifosfato de Adenosina/metabolismo , Sequência de Aminoácidos , Sequência de Bases , Endopeptidase Clp , Microscopia Eletrônica de Transmissão e Varredura , Modelos Moleculares , Dados de Sequência Molecular , Peso Molecular , Conformação Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/ultraestrutura , Espalhamento de Radiação , Serina Endopeptidases/genética , Serina Endopeptidases/isolamento & purificação , Serina Endopeptidases/ultraestrutura
19.
Biochemistry ; 33(43): 12776-86, 1994 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-7947683

RESUMO

The stearoyl-ACP delta 9 desaturase from plants is a new example of a growing number of proteins that contain oxo- or hydroxo-bridged diiron clusters. On the basis of differences in primary sequence motifs providing the cluster ligands and upon structural differences elucidated by X-ray crystallography, we now propose that the presently known, soluble diiron-oxo proteins can be grouped into two classes, I and II. Class I contains hemerythrin, myohemerythrin, and, possibly, purple acid phosphatase. Class II contains ribonucleotide reductases, bacterial hydrocarbon hydroxylases (methane monooxygenase, toluene-4-monooxygenase, and phenol hydroxylase), rubrerythrin, and stearoyl-ACP desaturases. Through the use of resonance Raman spectroscopy, we have detected symmetric (vs = 519 cm-1) and asymmetric (vas = 747 cm-1) vibrational modes in the castor stearoyl-ACP delta 9 desaturase, which are typical of oxo-bridged diiron clusters. These frequencies shift by -18 and -34 cm-1, respectively, in H218O, proving that the bridging ligand is readily exchangeable with solvent (t1/2 = 7 min). Calculation of an approximately 123 degrees Fe-O-Fe angle from the position of vs and vas and from the 18O-dependent shift in these frequencies suggests that the diiron-oxo cluster in the desaturase is triply bridged in the diferric state. In the diferrous state, the two iron sites of the cluster are structurally inequivalent, as shown by differential temperature dependence of the Mössbauer quadrupole splittings. For the class II diiron-oxo proteins, primary sequence alignments reveal conserved amino acid residues which act as iron cluster ligands, participate in a hydrogen-bonding network, and are potentially involved in O2 binding and activation. Based on this conservation, a structural model for the stearoyl-ACP delta 9 desaturase active site is proposed that has strong similarity to both ribonucleotide reductase and methane monooxygenase. However, after single turnover of the diferous state with 18O2, 18O is not detected in the oxo bridge of the castor desaturase. This is in contrast to the outcome observed for ribonucleotide reductase, suggesting the desaturase and ribonucleotide reductase differ in certain aspects of their respective O2-activation reactions.


Assuntos
Ferro/química , Oxigenases de Função Mista/química , Oxigênio/química , Homologia de Sequência de Aminoácidos , Análise Espectral Raman , Sequência de Aminoácidos , Sítios de Ligação , Ligação de Hidrogênio , Ferro/análise , Ferro/metabolismo , Dados de Sequência Molecular , Estrutura Molecular , Oxigênio/análise , Oxigênio/metabolismo , Proteínas Recombinantes/química , Análise de Sequência , Espectroscopia de Mossbauer
20.
Biochemistry ; 33(43): 12787-94, 1994 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-7947684

RESUMO

The eukaryotic fatty acid desaturases are iron-containing enzymes that catalyze the NAD-(P)H- and O2-dependent introduction of double bonds into methylene-interrupted fatty acyl chains. Examination of deduced amino acid sequences for the membrane desaturases from mammals, fungi, insects, higher plants, and cyanobacteria has revealed three regions of conserved primary sequence containing HX(3 or 4)H,HX(2 or 3)HH, and HX(2 or 3)HH. This motif is also present in the bacterial membrane enzymes alkane hydroxylase (omega-hydroxylase) and xylene monooxygenase. Hydropathy analyses indicate that these enzymes contain up to three long hydrophobic domains which would be long enough to span the membrane bilayer twice. The conserved His-containing regions have a consistent positioning with respect to these potential membrane spanning domains. Taken together, these observations suggest that the membrane fatty acid desaturases and hydrocarbon hydroxylases have a related protein fold, possibly arising from a common ancestral origin. In order to examine the functional role of these conserved His residues, we have made use of the ability of the rat delta 9 desaturase gene to complement a yeast strain deficient in the delta 9 desaturase gene function (ole1). By site-directed mutagenesis, eight conserved His residues in the rat delta 9 desaturase were individually converted to Ala. Each His-->Ala mutation failed to complement the yeast ole1 mutant. In contrast, mutation of three nonconserved flanking His residues or a partially conserved Arg residue within the conserved motif to Ala allowed for complementation of the ole1 phenotype.(ABSTRACT TRUNCATED AT 250 WORDS)


Assuntos
Sequência Conservada , Sistema Enzimático do Citocromo P-450/química , Histidina , Oxigenases de Função Mista/química , Oxigenases/química , Estearoil-CoA Dessaturase/química , Sequência de Aminoácidos , Animais , Sequência de Bases , Catálise , Citocromo P-450 CYP4A , Teste de Complementação Genética , Fígado/enzimologia , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Filogenia , Pseudomonas/enzimologia , Ratos , Saccharomyces cerevisiae/enzimologia , Saccharomyces cerevisiae/genética , Estearoil-CoA Dessaturase/genética , Estearoil-CoA Dessaturase/metabolismo
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