Methods for assessing the quality of AM fungal bio-fertilizer: Retrospect and future directions.

In the recent past, the mass production of arbuscular mycorrhizal (AM) fungi has bloomed into a large biofertilizer industry. Due to their obligate symbiotic nature, these fungi are propagated on living roots in substrate-based pot cultures and RiTDNA in in vitro or root organ culture systems. The quality assessment of AM inocula remains critical for the production and efficacy evaluation of AM fungi. The vigour of AM inocula are assessed through microscopic methods such as inoculum potential, infectivity potential/infection units, most probable number (MPN) and spore density. These methods marginally depend on the researcher's skill. The signature lipids specific to AM fungi, e.g. 16:1ω5cis ester-linked, phospholipid, and neutral lipid fatty acids provide more robustness and reproducibility. The quantitative real-time PCR of AM fungal taxa specific primers and probes analyzing gene copy number is also increasingly used. This article intends to sensitize AM fungal researchers and inoculum manufacturers to various methods of assessing the quality of AM inocula addressing their merits and demerits. This will help AM producers to fulfil the regulatory requirements ensuring the supply of high-quality AM inocula to end-users, and tap a new dimension of AM research in the commercial production of AM fungi and its application in sustainable plant production systems.

Data-Inspired and Physics-Driven Model Reduction for Dissociation: Application to the O2 + O System.

This work presents an in-depth discussion on the nonequilibrium dissociation of O2 molecules colliding with O atoms, combining quasi-classical trajectory calculations, master equation, and dimensionality reduction. A rovibrationally resolved database for all of the elementary collisional processes is constructed by including all nine adiabatic electronic states of O3 in the QCT calculations. A detailed analysis of the ab initio data set reveals that for a rovibrational level, the probability of dissociating is mostly dictated by its deficit in internal energy compared to the centrifugal barrier. Because of the assumption of rotational equilibrium, the conventional vibrational-specific calculations fail to characterize such a dependence. Based on this observation, a new physics-based grouping strategy for application to coarse-grained models is proposed. By relying on a hybrid technique made of rovibrationally resolved excitation coupled to coarse-grained dissociation, the new approach is compared to the vibrational-specific model and the direct solution of the rovibrational state-to-state master equation. Simulations are performed in a zero-dimensional isothermal and isochoric chemical reactor for a wide range of temperatures (1500-20,000 K). The study shows that the main contribution to the model inadequacy of vibrational-specific approaches originates from the incapability of characterizing dissociation, rather than the energy transfers. Even when constructed with only twenty groups, the new reduced-order model outperforms the vibrational-specific one in predicting all of the QoIs related to dissociation kinetics. At the highest temperature, the accuracy in the mole fraction is improved by 2000%.

Construction and characterization of protein-based cysteine nanosensor for the real time measurement of cysteine level in living cells.

Cysteine plays a critical role in maintaining normal human metabolism, redox homeostasis, and immune regulation. Despite its functional versatility, cysteine metabolism in the human body is not well understood because of the lack of a robust tool for real-time measurement of cysteine at the cellular and sub-cellular level. In the present study, a genetically encoded nanosensor was developed using Cj0982 protein of Campylobacter jejuni, Enhanced Cyan Fluorescent Protein (ECFP) and Venus. The Cj0982 was sandwiched between ECFP and Venus for the construction of the nanosensor, named as Cys-FS (Cysteine-Fluorescent-Sensor). The Cys-FS is pH stable, specific to cysteine and has an affinity of 1.2 × 10-5 M. A range of affinity mutants were also developed with a cumulative cysteine detection range from 800 nM to 3.5 mM. The Cys-FS nanosensor was expressed in bacterial, yeast and mammalian cells, and the dynamics of cysteine level was measured in living cells using the confocal microscopy. The results showed that the Cys-FS nanosensor successfully monitored the dynamics of cysteine in both prokaryotic and eukaryotic systems without disrupting the cell. Thus, this study presents a novel nanosensor that can measure cysteine in living cells. This nanosensor is minimally invasive and non-toxic.

New SMS classification of cochleovestibular malformation and its impact on decision-making.

OBJECTIVE: To propose a new classification of inner-ear anomalies that is more clinically oriented and surgically relevant: the SMS (Sawai Man Singh) classification of cochleovestibular malformations. METHODS: A retrospective multicentric study was conducted of 436 cochlear implantations carried out in 3 Indian tertiary care institutes. Patients with anomalous anatomy were included and classified, as per the new SMS classification, into cochleovestibular malformation types I, II, III and IV, based on cochlear morphology, modiolus and lamina cribrosa. RESULTS: There were 19, 23, 8 and 4 patients with cochleovestibular malformation types I, II, III and IV, respectively. Two-year post-operative Meaningful Auditory Integration Scale scores were statistically analysed. CONCLUSION: This new classification for inner-ear anomalies is a simpler, more practical, outcome-oriented classification that can be used to better plan the surgery. These merits make it a more uniform classification for recording results.

Long-term prediction of greenhouse gas risk to the Chinese hydropower reservoirs.

China is undergoing an extensive hydropower development, but the magnitude of greenhouse gas (GHG) emissions risk to reservoirs is not well known. Electricity generation from hydropower is a challenging issue when it comes to sustainable development. In this study, the data on Chinese hydropower reservoirs (n = 12) were collected from the literature and is used as in input to Greenhouse Gas Risk Assessment Tool (GRAT) to predict long-term GHG (CO2 & CH4) risk to the hydropower reservoirs and its associated lifecycle GHG emissions (GHG-LCA). The model predicted that till recently (i.e., year 2018) the hydropower reservoirs found under medium risk (i.e., 109 < CO2 ≤ 628 and 3 < CH4 ≤ 45 mg·m-2·d-1) which will reduce slowly over a period of 100 years. Out of 12 hydropower reservoirs studied, TGR presently under high risk of CH4 (i.e., 47 mg·m-2·d-1) and medium CO2 risk. Therefore, assessment is required to know the magnitude of CH4 and its effect on regional climate so that mitigation measures could be taken in advance. The carbon emissions as CO2eq of the studied reservoirs are found as 134.69 ±â€¯225.23 Gg yr-1, with a large share from CH4 emission. The associated life cycle GHG emissions are also estimated as 0.06 ±â€¯0.09 gCO2eq·kWh-1, which is higher than the global estimates (i.e. 0.015 gCO2eq·kWh-1).

Estimation of green house gas emissions from Koteshwar hydropower reservoir, India.

The emissions of greenhouse gas (GHG) from soils are of significant importance for global warming. The biological and physico-chemical characteristics of soil affect the GHG emissions from soils of different land use types. Methane (CH4), nitrous oxide (N2O), and carbon dioxide (CO2) production rates from six forest and agricultural soil types in the Koteshwar hydropower reservoir catchments located in the Uttarakhand, India, were estimated and their relations with physico-chemical characteristics of soils were examined. The samples of different land use types were flooded and incubated under anaerobic condition at 30 °C for 60 days. The cumulative GHG production rates in reservoir catchment are found as 1.52 ± 0.26, 0.13 ± 0.02, and 0.0004 ± 0.0001 µg g soil-1 day-1 for CO2, CH4, and N2O, respectively, which is lower than global reservoirs located in the same eco-region. The significant positive correlation between CO2 productions and labile organic carbon (LOC), CH4 and C/N ratio, while N2O and N/P ratio, while pH of soils is negatively correlated, conforms their key role in GHG emissions. Carbon available as LOC in the reservoir catchment is found as 3-14% of the total ?C" available in soils and 0-23% is retained in the soil after the completion of incubation. The key objective of this study to signify the C, N, and P ratios, LOC, and pH with GHG production rate by creating an incubation experiment (as in the case of benthic soil/sediment) in the lab for 60 days. In summary, the results suggest that carbon, as LOC were more sensitive indicators for CO2 emissions and significant C, N, and P ratios, affects the GHG emissions. This study is useful for the hydropower industry to know the GHG production rates after the construction of reservoir so that its effect could be minimized by taking care of catchment area treatment plan.

Status and trend of acute encephalitis syndrome and Japanese encephalitis in Bihar, India.

BACKGROUND.: Acute encephalitis syndrome (AES) is a clinical condition, of which the most common cause is Japanese encephalitis (JE). Though there is deficiency of data on AES and JE from Bihar, the state ranks third in the reporting of JE cases after Uttar Pradesh and Assam. We aimed to assess the status and trends of AES and JE cases in Bihar and to know the status of the disease in the districts. METHODS.: We collected monthly epidemiological data for AES and JE for the period 2009-2014. RESULTS.: A total of 4400 cases (733 cases/year) with an average case fatality rate (CFR) of 30% for AES for the entire study period. A total of 396 cases of JE were reported with approximately 14% CFR. The disease peaks were during the start and end of the Indian summer and monsoon months for AES and JE, respectively. Districts such as Patna, Jehanabad, Nawada, Gaya and East Champaran reported the maximum number of AES and JE cases with annual incidence rates of 4.7-25.0 and 0.546-1.78 per 100 000 population, respectively. CONCLUSION.: Since 2009, the incidence of AES and JE cases has been increasing in Bihar.

Carbon stock estimation in the catchment of Kotli Bhel 1A hydroelectric reservoir, Uttarakhand, India.

Constructions of dams/reservoirs all over the world are reported to emit significant amount of greenhouse gases (GHGs) and are considered as environmental polluters. Organic carbon is contributed by the forest in the catchment, part of soil organic carbon is transported through the runoffs to the reservoir and undergoes aerobic and anaerobic degradation with time to release GHGs to the atmosphere. Literature reveals that no work is available on the estimation of 'C' stock of trees of forest catchment for assessing/predicting the GHGs emissions from the reservoirs to atmosphere. To assess the GHGs emission potential of the reservoir, an attempt is made in the study to estimate the 'C' stock in the forest catchment of Kotli Bhel 1A hydroelectric reservoir located in Tehri Garhwal district of Uttarakhand, India. For this purpose, the selected area was categorized into the site-I, II and III along the Bhagirathi River based on type of forest available in the catchment. The total carbon density (TCD) of tree species of different forest types was calculated using diameter at breast height (dbh) and trees height. The results found that the TCD of forest catchment was found 76.96MgCha-1 as the highest at the site-II and 29.93MgCha-1 as lowest at site-I with mean of 51.50MgCha-1. The estimated forest 'C' stock shall be used to know the amount of carbon present before and after construction of the dam and to predict net GHGs emissions. The results may be helpful to study the potential of a given reservoir to release GHG and its subsequent impacts on global warming/climate challenges.

New ethnomedicinal claims from Gujjar and Bakerwals tribes of Rajouri and Poonch districts of Jammu and Kashmir, India.

BACKGROUND: Medicinal plants are frequently employed by Gujjar and Bakerwal tribes in Rajouri and Poonch districts of Jammu and Kashmir, India for treatment of various ailments in humans and livestock. Hence, extensive field work was conducted to document the ethnomedicinal plants used by these tribes. METHODOLOGY: Ninety one key informants were interviewed using both in situ and ex situ type of survey methods. The data were analyzed using user value (UV), informant consensus factor (Fic), fidelity level (FL) and relative frequency of citation (Rfc). RESULTS: A total of 104 species of medicinal plants used in the treatment of 40 different non-communicable ailments with 138 remedies are reported. Cephalanthera longifolia (L.) Fritsch was recorded for the first time with ethnomedicinal uses and the rest of the species were previously reported with different medicinal uses by other tribal people. Out of 138 remedies, 129 were employed for human ailments and the remaining seven were used to treat livestock. Most of the species were harvested for leaves (24 species). Herbs (66 species) were the major life form used for medicinal purpose and the most common method of remedy preparation was decoction/tea (27.8%). The highest use value plant was Verbascum thapsus L. for the treatment of stomachache and snake bite. CONCLUSIONS: Plants such as Allium humile Kunth, Angelica glauca Edgew, Arnebia benthamii (Wall. ex G. Don) I.M.Johnst, Asparagus racemosus Willd., Balanophora involucrata Hook. f. & Thomson, C. longifolia (L.) Fritsch, Cuscuta epithymum (L.) L., Geranium wallichianum D. Don ex Sweet, Gloriosa superb L., Habenaria intermedia D. Don, Phyllanthus emblica L., Ramaria Formosa (Pers.) Quel. and V. thapsus L. showing high Rfc and FL values may be studied for associated pharmacological activities.

A rare case of subglottic embryonal rhabdomyosarcoma: managed with the aim of organ preservation.

BACKGROUND: Rhabdomyosarcoma is a malignant mesenchymal neoplasm rarely diagnosed in the larynx. Traditionally, it has been treated by radical surgery (i.e. total laryngectomy), followed by radiation and/or chemotherapy. Recent advances suggest that it may be treated with combination therapy comprising high-dose radiation and pulse chemotherapy, with a high success rate. CASE REPORT: We report the first documented case of subglottic embryonal rhabdomyosarcoma in an adolescent female treated with chemoradiation alone, and review the literature reflecting a move towards organ preservation. CONCLUSION: While surgery has been successfully used to treat this neoplasm, combination therapy, as described in our study, also seems effective and has the added advantage of preserving laryngeal function.

Assessing the impact of irrigation treatments on thiram residual trends: correspondence with numerical modelling and field-scale experiments.

The present study was undertaken to study the trends of transport of thiram, a dithiocarbamate pesticide, at different time and depth in the fields under real field conditions for wheat crop. Numerical simulations were carried out by solving the coupled soil-water content movement and mass transport equations using HYDRUS- 1D. The supplementary data used for paramaterization of HYDRUS-1D comprise of irrigation treatments, climatic conditions, and soil characteristics. Results focus on the effects and influence of irrigation treatments on pesticide persistence and mobility. Modelling results were in good agreement with the experimentally determined thiram concentrations. Application of the model to measured field data of thiram movement indicates that the modelling approach can provide reliable and useful estimates of the mass flux of water and non-volatile pesticide in vadose zone. For policy-makers and planners, some regulation strategies are suggested for controlling inappropriate pesticide application under deficit irrigation or rain-fed conditions.

Catalytic regeneration of mercury sorbents.

Traditionally, mercury sorbents are disposed of in landfills, which may lead to contamination of soil and groundwater. In this work, the regeneration of activated carbon (AC) as a mercury sorbent was investigated. The decomposition of HgCl2 on the surface of pure AC was studied, as well as sorbent which has been treated with FeCl3 or NaCl. In all cases, the sorbent is found to be structurally stable through a single regeneration, which is verified through BET, XRD, and XPS analysis. The desorption of mercury from the sorbent is found to follow Henry's law. Additionally, a kinetic analysis suggests that although the presence of activated carbon lowers the energy requirement for the desorption of mercury, it significantly decreases the rate by decreasing the concentration of the HgCl2. FeCl3 and NaCl both promoted the decomposition of HgCl2, but FeCl3 did so more significantly, increasing the rate constants by a factor of 10 and decreasing the activation energy for the decomposition of HgCl2 by 14% to 40%.

Auto-immune pancreatitis--an uncommon type of chronic pancreatitis.

Auto-immune pancreatitis is an increasingly recognised disorder of presumed auto-immune aetiology. It has to be differentiated from other forms of chronic pancreatitis and pancreatic cancer as it has dramatic response with steroid therapy. So, early and prompt diagnosis of this disorder in early stage of disease is essential. Here a case of auto-immune pancreatitis in a 16 years old young male is reported.

Complete nucleotide sequence of cherry virus A (CVA) infecting sweet cherry in India.

Cherry virus A (CVA) is a graft-transmissible member of the genus Capillovirus that infects different stone fruits. Sweet cherry (Prunus avium L; family Rosaceae) is an important deciduous temperate fruit crop in the Western Himalayan region of India. In order to determine the health status of cherry plantations and the incidence of the virus in India, cherry orchards in the states of Jammu and Kashmir (J&K) and Himachal Pradesh (H.P.) were surveyed during the months of May and September 2009. The incidence of CVA was found to be 28 and 13% from J&K and H.P., respectively, by RT-PCR. In order to characterize the virus at the molecular level, the complete genome was amplified by RT-PCR using specific primers. The amplicon of about 7.4 kb was sequenced and was found to be 7,379 bp long, with sequence specificity to CVA. The genome organization was similar to that of isolates characterized earlier, coding for two ORFs, in which ORF 2 is nested in ORF1. The complete sequence was 81 and 84% similar to that of the type isolate at the nucleotide and amino acid level, respectively, with 5' and 3' UTRs of 54 and 299 nucleotides, respectively. This is the first report of the complete nucleotide sequence of cherry virus A infecting sweet cherry in India.

Kinetics of acid base catalyzed transesterification of Jatropha curcas oil.

Out of various non-edible oil resources, Jatropha curcas oil (JCO) is considered as future feedstock for biodiesel production in India. Limited work is reported on the kinetics of transesterification of high free fatty acids containing oil. The present study reports the results of kinetic study of two-step acid base catalyzed transesterification process carried out at an optimum temperature of 65 °C and 50 °C for esterification and transesterification respectively under the optimum methanol to oil ratio of 3:7 (v/v), catalyst concentration 1% (w/w) for H2SO4 and NaOH. The yield of methyl ester (ME) has been used to study the effect of different parameters. The results indicate that both esterification and transesterification reaction are of first order with reaction rate constant of 0.0031 min⁻¹ and 0.008 min⁻¹ respectively. The maximum yield of 21.2% of ME during esterification and 90.1% from transesterification of pretreated JCO has been obtained.

Cognitive behavior therapy for stuttering: a case series.

The present investigation was aimed at studying the efficacy of cognitive behavior therapy (CBT) in reducing the symptoms of stuttering and dysfunctional cognitions and in enhancing assertiveness and quality of life in clients with stuttering. Five clients with stuttering who met the inclusion criteria (male clients with diagnosis of stuttering) and exclusion criteria (clients with brian damage), substance abuse or mental retardation were enrolled for the study. A single-case design was adopted. The pre-, mid- and post-assessment were carried out using Stuttering Severity Scale (SSI), Perception of Stuttering Inventory (PSI), Beck's Anxiety Inventory (BAI), Dysfunctional Attitude (DAS), Fear of Negative Evaluation (FNE), Assertiveness Scale (AS), Rosenberg's Self-Esteem Scale (RSES), and World Health Organization - Quality of Life Scale (WHO-QOL). Five clients received cognitive behavioral intervention comprising of psycho-education, relaxation, deep breathing, humming, prolongation, cognitive restructuring, problem-solving strategies and assertiveness. At post-treatment assessment, there was improvement. The findings of the study are discussed in the light of available research work, implications, limitations of the study and suggestions for future research.

Difference in in vitro response and esculin content in two populations of Taraxacum officinale Weber.

In vitro micropropagation has been achieved in medicinally important plant, Taraxacum officinale collected from two different regions, Kashmir (J & K) and Garhwal (Uttarakhand). Leaf segments inoculated on MS supplemented with different combinations of Indole-3-acetic acid (IAA) and Benzyladenine (BA) produced indirect regeneration. For root induction MS fortified with Indole-3-butyric acid (IBA) was used. Taraxacum officinale collected from Garhwal responded two weeks earlier and showed shoot regeneration whereas in Kashmir population only callus proliferation occurred. Esculin content was also higher in the samples from Garhwal. The content was affected by both, the hormone concentration as well as age of the cultures. RAPD of the in vitro raised regenerants confirmed genetic stability.

An assessment of institutional deliveries under JSY at different levels of health care in Jaipur District, Rajasthan.

BACKGROUND & OBJECTIVE: Janani Suraksha Yojana (JSY) has been implemented in the country to enhance institutional deliveries. This study assess the gaps in delivery services and utilization of resources at Basic and Comprehensive Emergency Obstetric Care Centers (BEmOCs, & CEmOCs), accredited sub centers and private hospitals in district Jaipur, Rajasthan. METHODS: The study was undertaken during October-December 2008 in 31 selected health facilities (5 CEmOCs, 4 BEmOCs, 14 accredited subcentres and 8 accredited private hospitals) in district Jaipur. Both primary and secondary data was collected using qualitative and quantitative techniques, by facility survey, interview of service providers (specialists, medical officers, and paramedical staff) and beneficiaries. RESULTS: There is an increase in institutional deliveries following implementation of JSY. Though the normal deliveries were conducted 24 hours by the BEmOCs and CEmOCs however the necessary drugs like parental antibiotics, mesoprostol, magsulf etc were in short supply and use of partograph was absent at the health facilities. The quality of emergency obstetric care services was still poor due to the lack of blood storage units and anesthetists in CEmOCs. Private accredited hospitals fared better as they had the manpower and managed more complicated cases as compared to government facilities, for caesarean sections. The accredited sub centers were nonfunctional negating the very objective of accreditation. Community is still unaware of the 24 hour stay post delivery and provision of grievance redressal system. CONCLUSION: The quality aspects of institutional deliveries are far from desired level mostly because of lack of resources, both manpower and materials; non achievement of IPHS standards etc. The service quality related to antenatal, intranatal and postnatal care need to be improved. The JSY is perceived as an effective scheme by the beneficiaries but gaps in resources and lack of quality of services needs to be adequately dealt with.

Body mass index and per capita income influence duodenal ulcer healing and H. pylori eradication whilst dietary factors play no part.

BACKGROUND: The role of dietary and sociodemographic factors in the healing of duodenal ulcer following H. pylori eradication remains undefined. AIM: To assess the role of diet, sociodemography and body mass index in the healing of duodenal ulcer and eradication of H. pylori. METHODS: A cross-sectional study consisting of 67 consecutive duodenal ulcer patients was undertaken. Sociodemographic factors studied included age, sex, occupation, educational status, religion, type of family, number of family members, per capita income and residence (urban vs. rural). Personal habits studied included alcohol consumption and smoking. Regular dietary intake over a two-month period was assessed using the food frequency questionnaire. All patients had documented H. pylori infection at the time of inclusion and received standard triple eradication therapy. Follow-up endoscopy and testing for H. pylori were done 4 weeks after completion of eradication therapy. RESULTS: The mean age of the 67 patients (60 male, 7 female) was 39.9+/-13.6 years. Healing of duodenal ulcer was documented in 51 patients. H. pylori infection was successfully eradicated in 31 patients but not in the other 36. There was no difference between the groups (Group A1: H. pylori eradicated, Group B1: H. pylori not eradicated) with regard to dietary and socio-demographic variables, except for BMI, which was significantly higher in patients in whom H. pylori had been eradicated. Per capita income was significantly higher in Group A2 (healed duodenal ulcer) as compared to Group B2 (duodenal ulcer not healed) while there was no difference in dietary and socio-demographic variables in these two groups. CONCLUSION: We found that higher body mass index and higher per capita income were associated with successful H. pylori eradication and duodenal ulcer healing, respectively, and that diet had no role to play in either. Further epidemiological studies from different parts of India and studies that control for Helicobacter pylori are required to establish predictive factors.