Detecting sediment recovery below an offshore longline mussel farm: A macrobenthic Biological Trait Analysis (BTA).

Expansion of bivalve aquaculture offshore reports lower environmental impacts compared to inshore farms. Taking a Before-After Control-Impact approach, this study presents the first functional diversity analysis and long-term Biological Trait Analysis (BTA) of infauna functional traits following the development of the United Kingdom's first large-scale, offshore longline mussel farm. Located in an area historically impacted by mobile fishing gear, farm sites had the greatest number of taxa and abundance compared to control sites. Functional diversity varied significantly across treatments (farm, near control, far control); while Functional Diversity, Richness, Divergence and Dispersion increased over time within the farm, Functional Evenness and Redundancy decreased. Bioturbation, body size, diet, feeding mode, life span, motility, sediment position, sensitivity and substrate type were chosen for Community-level Weighted Mean analysis, depicting the most frequently affected biological traits by shellfish farming. Farm sites developed a wider range of traits enhancing ecosystem function and habitat recovery after years of seabed damage. Outcomes support the use of functional diversity and BTA analysis to perform ecosystem assessment, supporting decision-makers implement policy and management.

A novel method for identifying coded tags recorded on aquatic acoustic monitoring systems.

Aquatic biotelemetry increasingly relies on using acoustic transmitters ('tags') that enable passive detection of tagged animals using fixed or mobile receivers. Both tracking methods are resource-limited, restricting the spatial area in which movements of highly mobile animals can be measured using proprietary detection systems. Transmissions from tags are recorded by underwater noise monitoring systems designed for other purposes, such as cetacean monitoring devices, which have been widely deployed in the marine environment; however, no tools currently exist to decode these detections, and thus valuable additional information on animal movements may be missed. Here, we describe simple hybrid methods, with potentially wide application, for obtaining information from otherwise unused data sources. The methods were developed using data from moored, acoustic cetacean detectors (C-PODs) and towed passive receiver arrays, often deployed to monitor the vocalisations of cetaceans, but any similarly formatted data source could be used. The method was applied to decode tag detections that were found to have come from two highly mobile fish species, bass (Dicentrarchus labrax) and Twaite shad (Alosa fallax), that had been tagged in other studies. Decoding results were validated using test tags; range testing data were used to demonstrate the relative efficiency of these receiver methods in detecting tags. This approach broadens the range of equipment from which acoustic tag detections can be decoded. Novel detections derived from the method could add significant value to past and present tracking studies at little additional cost, by providing new insights into the movement of mobile animals at sea.

Optimal fishing effort benefits fisheries and conservation.

The ecosystem effects of all commercial fishing methods need to be fully understood in order to manage our marine environments more effectively. The impacts associated with the most damaging mobile fishing methods are well documented leading to such methods being removed from some partially protected areas. In contrast, the impacts on the ecosystem from static fishing methods, such as pot fishing, are less well understood. Despite commercial pot fishing increasing within the UK, there are very few long term studies (> 1 year) that consider the effects of commercial pot fishing on temperate marine ecosystems. Here we present the results from a controlled field experiment where areas of temperate reef were exposed to a pot fishing density gradient over 4 years within a Marine Protected Area (MPA), simulating scenarios both above and below current levels of pot fishing effort. After 4 years we demonstrate for the first time negative effects associated with high levels of pot fishing effort both on reef building epibiota and commercially targeted species, contrary to existing evidence. Based on this new evidence we quantify a threshold for sustainable pot fishing demonstrating a significant step towards developing well-managed pot fisheries within partially protected temperate MPAs.

The impact of potting for crustaceans on temperate rocky reef habitats: Implications for management.

Multi-use marine protected areas (MPAs) are increasingly designated towards achieving global conservation targets. To develop effective management, the impact of permitted activities must be understood. Potting for shellfish occurs on temperate rocky reefs globally with impact not fully quantified. This UK-based study used underwater video to quantify (a) benthic condition of rocky reefs, (b) mechanisms of potting interaction and (c) true footprint of potting. Assemblages in static gear areas were more indicative of a healthy reef than those in mixed gear areas. Damage was recorded during pot hauling, but the area of damage was not the entire pot haul path. 25-30% of individuals were damaged (commonly through tissue abrasion) or removed. Notably, damage occurred to some long-lived, slow growing taxa raising concerns over impacts. Potting is more destructive than previously thought and managers must balance ecology with social and economic considerations to determine what level of impact is acceptable.

A simple mooring modification reduces impacts on seagrass meadows.

Moorings can have a detrimental impact on seagrass, fragmenting the meadows, resulting in the habitat degradation. To reduce contact of the moorings with the seabed we attached small floats along the chain of a traditional swing mooring and monitored the ecological impacts of this modified mooring, with reference to a standard swing mooring, in a seagrass meadow under high tidal influence. After three years, seagrass density surrounding the modified mooring was over twice as high as that of the standard mooring, with blade length surrounding the modified mooring also found to exceed that of the standard mooring. Seagrass-associated epifaunal species richness was twice as high surrounding the modified mooring compared to the standard mooring. Sediment composition was considerably finer at the modified mooring, indicative of increased disturbance surrounding the standard mooring. A simple modification to existing swing moorings can mitigate some of the impacts of moorings on seagrass meadows, whilst accommodating for tidal fluctuations. The scale of the differences observed between the mooring types demonstrates the susceptibility of seagrass meadows to damage from swing moorings. Given the ecological importance of these habitats, it is crucial that action is taken to reduce further degradation, such as that demonstrated here.

PelagiCam: a novel underwater imaging system with computer vision for semi-automated monitoring of mobile marine fauna at offshore structures.

Engineered structures in the open ocean are becoming more frequent with the expansion of the marine renewable energy industry and offshore marine aquaculture. Floating engineered structures function as artificial patch reefs providing novel and relatively stable habitat structure not otherwise available in the pelagic water column. The enhanced physical structure can increase local biodiversity and benefit fisheries yet can also facilitate the spread of invasive species. Clear evidence of any ecological consequences will inform the design and placement of structures to either minimise negative impacts or enhance ecosystem restoration. The development of rapid, cost-effective and reliable remote underwater monitoring methods is crucial to supporting evidence-based decision-making by planning authorities and developers when assessing environmental risks and benefits of offshore structures. A novel, un-baited midwater video system, PelagiCam, with motion-detection software (MotionMeerkat) for semi-automated monitoring of mobile marine fauna, was developed and tested on the UK's largest offshore rope-cultured mussel farm in Lyme Bay, southwest England. PelagiCam recorded Atlantic horse mackerel (Trachurus trachurus), garfish (Belone belone) and two species of jellyfish (Chrysaora hysoscella and Rhizostoma pulmo) in open water close to the floating farm structure. The software successfully distinguished video frames where fishes were present versus absent. The PelagiCam system provides a cost-effective remote monitoring tool to streamline biological data acquisition in impact assessments of offshore floating structures. With the rise of sophisticated artificial intelligence for object recognition, the integration of computer vision techniques should receive more attention in marine ecology and has great potential to revolutionise marine biological monitoring.

Motion in the ocean-Paradigm shift in movement ecology requires "sedentary" organisms to be redefined.

In Focus: Hamel, J.-F., Sun, J., Gianasi, B. L., et al. (2019). Active buoyancy adjustment increases dispersal potential in benthic marine animals. Journal of Animal Ecology. https://doi.org/10.1111/1365-2656.12943 Effective ecosystem-based fisheries and conservation management relies on the accuracy of population structure and connectivity models. The majority of sedentary marine species are pelago-benthic, meaning the pelagic larval stages disperse using ocean currents, and the adults are stationary or crawl slowly over the seabed. Adult movement was, until recently, thought to be insignificant due to the limited spatial range. In this issue, a novel method of translocation for adults that may far exceed the dispersion capability of the juveniles is presented, providing evidence for important effects of adult dispersal. Active buoyancy adjustment (ABA) is a behavioural response to environmental stressors or water currents that enables echinoderm Asteroidea (sea stars) and Holothuroidea (sea cucumbers) to efficiently relocate. Adult relocation using tides could explain mass spawning aggregations that increase population and individual fitness, and less advantageous mass stranding events. Implications of ABA for future marine management and policy are discussed.

Assessing the impact of introduced infrastructure at sea with cameras: A case study for spatial scale, time and statistical power.

Detecting the effects of introduced artificial structures on the marine environment relies upon research and monitoring programs that can provide baseline data and the necessary statistical power to detect biological and/or ecological change over relevant spatial and temporal scales. Here we report on, and assess the use of, Baited Remote Underwater Video (BRUV) systems as a technique to monitor diversity, abundance and assemblage composition data to evaluate the effects of marine renewable energy infrastructure on mobile epi-benthic species. The results from our five-year study at a wave energy development facility demonstrate how annual natural variation (time) and survey design (spatial scale and power) are important factors in the ability to robustly detect change in common ecological metrics of benthic and bentho-pelagic ecosystems of the northeast Atlantic. BRUV systems demonstrate their capacity for use in temperate, high energy marine environments, but also how weather, logistical and technical issues require increased sampling effort to ensure statistical power to detect relevant change is achieved. These factors require consideration within environmental impact assessments if such survey methods are to identify and contribute towards the management of potential positive or negative effects on benthic systems.

A legal and ecological perspective of 'site integrity' to inform policy development and management of Special Areas of Conservation in Europe.

The European Union Habitats Directive (92/43/EEC) provides for the designation and management of Special Areas of Conservation (SACs) and requires that impacting activities are subject to 'an appropriate assessment' of their implications for the 'integrity' of the site. We define the term 'site integrity' from a legal and an ecological perspective. We demonstrate that 'site integrity' is the maintenance of ecological processes and functions that support the wider delivery of ecosystem services. 'Site integrity' can be influenced by SAC management. Management that seeks to support 'site integrity' may include the use of buffer zones or connecting areas that extend beyond the SAC site's designated features. We conclude that 'site integrity' and 'favourable conservation status' are powerful legal terms that if fully transposed into the law and policy of Member States can enable the achievement of broader European and International goals for marine conservation.

Epibenthic assessment of a renewable tidal energy site.

Concern over global climate change as a result of fossil fuel use has resulted in energy production from renewable sources. Marine renewable energy devices provide clean electricity but can also cause physical disturbance to the local environment. There is a considerable paucity of ecological data at potential marine renewable energy sites that is needed to assess potential future impacts and allow optimal siting of devices. Here, we provide a baseline benthic survey for the Big Russel in Guernsey, UK, a potential site for tidal energy development. To assess the suitability of proposed sites for marine renewable energy in the Big Russel and to identify potential control sites, we compared species assemblages and habitat types. This baseline survey can be used to select control habitats to compare and monitor the benthic communities after installation of the device and contribute towards the optimal siting of any future installation.

Recovery of a temperate reef assemblage in a marine protected area following the exclusion of towed demersal fishing.

Marine Protected Areas MPA have been widely used over the last 2 decades to address human impacts on marine habitats within an ecosystem management context. Few studies have quantified recovery of temperate rocky reef communities following the cessation of scallop dredging or demersal trawling. This is critical information for the future management of these habitats to contribute towards conservation and fisheries targets. The Lyme Bay MPA, in south west UK, has excluded towed demersal fishing gear from 206 km(2) of sensitive reef habitat using a Statutory Instrument since July 2008. To assess benthic recovery in this MPA we used a flying video array to survey macro epi-benthos annually from 2008 to 2011. 4 treatments (the New Closure, previously voluntarily Closed Controls and Near or Far Open to fishing Controls) were sampled to test a recovery hypothesis that was defined as 'the New Closure becoming more similar to the Closed Controls and less similar to the Open Controls'. Following the cessation of towed demersal fishing, within three years positive responses were observed for species richness, total abundance, assemblage composition and seven of 13 indicator taxa. Definitive evidence of recovery was noted for species richness and three of the indicator taxa (Pentapora fascialis, Phallusia mammillata and Pecten maximus). While it is hoped that MPAs, which exclude anthropogenic disturbance, will allow functional restoration of goods and services provided by benthic communities, it is an unknown for temperate reef systems. Establishing the likely timescales for restoration is key to future marine management. We demonstrate the early stages of successful recruitment and link these to the potential wider ecosystem benefits including those to commercial fisheries.

A quantitative, non-destructive methodology for habitat characterisation and benthic monitoring at offshore renewable energy developments.

Following governments' policies to tackle global climate change, the development of offshore renewable energy sites is likely to increase substantially over coming years. All such developments interact with the seabed to some degree and so a key need exists for suitable methodology to monitor the impacts of large-scale Marine Renewable Energy Installations (MREIs). Many of these will be situated on mixed or rocky substrata, where conventional methods to characterise the habitat are unsuitable. Traditional destructive sampling is also inappropriate in conservation terms, particularly as safety zones around (MREIs) could function as Marine Protected Areas, with positive benefits for biodiversity. Here we describe a technique developed to effectively monitor the impact of MREIs and report the results of its field testing, enabling large areas to be surveyed accurately and cost-effectively. The methodology is based on a high-definition video camera, plus LED lights and laser scale markers, mounted on a "flying array" that maintains itself above the seabed grounded by a length of chain, thus causing minimal damage. Samples are taken by slow-speed tows of the gear behind a boat (200 m transects). The HD video and randomly selected frame grabs are analysed to quantify species distribution. The equipment was tested over two years in Lyme Bay, UK (25 m depth), then subsequently successfully deployed in demanding conditions at the deep (>50 m) high-energy Wave Hub site off Cornwall, UK, and a potential tidal stream energy site in Guernsey, Channel Islands (1.5 ms⁻¹ current), the first time remote samples from such a habitat have been achieved. The next stage in the monitoring development process is described, involving the use of Remote Operated Vehicles to survey the seabed post-deployment of MREI devices. The complete methodology provides the first quantitative, relatively non-destructive method for monitoring mixed-substrate benthic communities beneath MPAs and MREIs pre- and post-device deployment.

Recovery of meiofauna communities following mudflat disturbance by trampling associated with crab-tiling.

The provision of artificial shelters for the collection of crabs, known as crab-tiling, and the subsequent harvesting of the soft "peeler" crabs for angling bait, are associated with trampling disturbance of intertidal mudflats in the United Kingdom. Recovery of meiofauna communities following crab-tiling activity was investigated on an intertidal mudflat in SW England. Harvesting of experimental plots was reproduced six times over a 2-week period. Meiofauna was collected at low tides 12h, 36 h and 144 h after treatment. Meiofaunal and nematode abundance, and nematode species number, was significantly greater in controls compared to crab-tile stations at 12h. At 36 h and 144 h there were no significant differences between treatments, indicating recovery had occurred in 12-36 h. Multivariate analysis showed nematode assemblage composition from control plots to be significantly different from crab-tile plots at 12h. No significant differences were observed between sediment physical parameters with treatment. Results suggest that the predominant effect of disturbance may be vibration-induced burial, which causes nematodes to bury deeper into the sediment, beyond the depth sampled, and explains the rapid recovery.