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1.
Front Microbiol ; 15: 1404991, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38887715

RESUMO

Ruminal methane production is the main sink for metabolic hydrogen generated during rumen fermentation, and is a major contributor to greenhouse gas (GHG) emission. Individual ruminants exhibit varying methane production efficiency; therefore, understanding the microbial characteristics of low-methane-emitting animals could offer opportunities for mitigating enteric methane. Here, we investigated the association between rumen fermentation and rumen microbiota, focusing on methane production, and elucidated the physiological characteristics of bacteria found in low methane-producing cows. Thirteen Holstein cows in the late lactation stage were fed a corn silage-based total mixed ration (TMR), and feed digestion, milk production, rumen fermentation products, methane production, and rumen microbial composition were examined. Cows were classified into two ruminal fermentation groups using Principal component analysis: low and high methane-producing cows (36.9 vs. 43.2 L/DMI digested) with different ruminal short chain fatty acid ratio [(C2+C4)/C3] (3.54 vs. 5.03) and dry matter (DM) digestibility (67.7% vs. 65.3%). However, there were no significant differences in dry matter intake (DMI) and milk production between both groups. Additionally, there were differences in the abundance of OTUs assigned to uncultured Prevotella sp., Succinivibrio, and other 12 bacterial phylotypes between both groups. Specifically, a previously uncultured novel Prevotella sp. with lactate-producing phenotype was detected, with higher abundance in low methane-producing cows. These findings provide evidence that Prevotella may be associated with low methane and high propionate production. However, further research is required to improve the understanding of microbial relationships and metabolic processes involved in the mitigation of enteric methane.

2.
Anim Biosci ; 37(2): 360-369, 2024 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-37946422

RESUMO

Ruminal methane production functions as the main sink for metabolic hydrogen generated through rumen fermentation and is recognized as a considerable source of greenhouse gas emissions. Methane production is a complex trait affected by dry matter intake, feed composition, rumen microbiota and their fermentation, lactation stage, host genetics, and environmental factors. Various mitigation approaches have been proposed. Because individual ruminants exhibit different methane conversion efficiencies, the microbial characteristics of low-methane-emitting animals can be essential for successful rumen manipulation and environment-friendly methane mitigation. Several bacterial species, including Sharpea, uncharacterized Succinivibrionaceae, and certain Prevotella phylotypes have been listed as key players in low-methane-emitting sheep and cows. The functional characteristics of the unclassified bacteria remain unclear, as they are yet to be cultured. Here, we review ruminal methane production and mitigation strategies, focusing on rumen fermentation and the functional role of rumen microbiota, and describe the phylogenetic and physiological characteristics of a novel Prevotella species recently isolated from low methane-emitting and high propionate-producing cows. This review may help to provide a better understanding of the ruminal digestion process and rumen function to identify holistic and environmentally friendly methane mitigation approaches for sustainable ruminant production.

3.
Anim Sci J ; 94(1): e13876, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37818871

RESUMO

This study aimed to investigate the effect of rumen microbiota transfaunation on the growth, rumen fermentation, and the microbial community of Japanese Black cattle that were separated early from their dams. Here, 24 calves were separated from their dams immediately after calving, 12 of which were transfaunated via inoculation with rumen fluid from adult cattle at the age of 2 months while the remaining 12 were kept unfaunated (not-inoculated). Feed efficiency monitoring was performed during 7-10 months of age. Body weight and feed intake were not significantly different between the transfaunated and unfaunated cattle. Transfaunation increased the relative levels of acetate and butyrate but decreased those of propionate, which increased the non-glucogenic/glucogenic short-chain fatty acid ratio. Microbial 16S, 18S, and ITS ribosomal RNA gene amplicon analysis showed that rumen microbial diversity and composition differed between transfaunated and unfaunated cattle; transfaunation increased the abundance of acetate- and butyrate-producing bacteria, and decreased the abundance of bacterial genera associated with propionate production. Transfaunation also increased the abundance of Methanomassiliicoccaceae_group10 (1.94% vs. 0.05%) and Neocallimastix (27.1% vs. 6.8%) but decreased that of Methanomicrobium (<0.01% vs. 0.06%). Our findings indicate that rumen microbiota transfaunation shifts rumen fermentation toward acetate and butyrate production through a change in the rumen microbial composition in Japanese Black cattle.


Assuntos
Microbiota , Propionatos , Animais , Bovinos , Propionatos/metabolismo , Rúmen/metabolismo , Fermentação , Acetatos/metabolismo , Butiratos/metabolismo , Dieta/veterinária , Ração Animal/análise
4.
Anim Sci J ; 94(1): e13829, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-36992531

RESUMO

This study aimed to determine the physiological features and rumen microbial composition associated with the non-glucogenic-to-glucogenic short-chain fatty acids ratio (NGR). Holstein cows were housed in a free-stall barn with an automatic milking system and fed a partially mixed ration. Physiological and microbial analyses were performed on 66 datasets collected from 66 cows (50-250 days in milk). NGR was positively correlated with ruminal pH, relative abundances of protozoa and fungi, methane conversion factor, methane intensity, plasma lipids, parity, and milk fat, and negatively correlated with total short-chain fatty acids. To highlight the differences in bacterial and archaeal compositions between NGRs, low-NGR cows (N = 22) were compared with medium-NGR (N = 22) and high-NGR (N = 22) cows. The low-NGR group was characterized by a lower abundance of Methanobrevibacter and a higher abundance of operational taxonomic units belonging to the lactate-producing, such as Intestinibaculum, Kandleria, and Dialister, and the succinate-producing Prevotella. Our findings indicate that NGR affects the methane conversion factor, methane intensity, and blood and milk compositions. Low NGR is associated with a higher abundance of lactate- and succinate-producing bacteria and lower abundances of protozoa, fungi, and Methanobrevibacter.


Assuntos
Lactação , Rúmen , Gravidez , Feminino , Bovinos , Animais , Rúmen/metabolismo , Dieta/veterinária , Ácidos Graxos Voláteis/metabolismo , Leite/química , Bactérias , Lactatos/metabolismo , Metano/metabolismo , Fermentação , Ácidos Graxos/análise , Ração Animal/análise
5.
Artigo em Inglês | MEDLINE | ID: mdl-35254232

RESUMO

The genus Prevotella plays an important role in polysaccharide degradation and fermentation in the rumen. To further understand the function of the phylogenetically diverse genus Prevotella, it is necessary to explore the individual characteristics at the species level. In this study, Gram-negative anaerobic bacterial strains isolated from the rumen of Holstein cows were identified. Strain R5019T was classified within the genus Prevotella based on 16S rRNA gene sequence-based phylogenetic analysis. The values of 16S rRNA gene sequence similarity, average nucleotide identity and digital DNA-DNA hybridization between strain R5019T and its phylogenetically nearest species Prevotella multisaccharivorax PPPA20T were 89.8, 82.6, and 29.3 %, respectively. The genome size of R5019T was estimated to be ca. 4.19 Mb with a genomic G+C content of 49.5 mol%. The major cellular fatty acids and menaquinones were C15 : 0 anteiso and C17 : 0 anteiso and MK-11 and MK-12, respectively. Succinate, lactate, malate, acetate and formate were produced as the fermentation end products using glucose. Based on phylogenetic, physiological, biochemical and genomic differences between 11 strains and other phylogenetically related Prevotella species, a novel species, Prevotella lacticifex sp. nov., is proposed within the genus Prevotella. The type strain is R5019T (=JCM 34664T=DSM 112675T).


Assuntos
Ácidos Graxos , Rúmen , Animais , Técnicas de Tipagem Bacteriana , Composição de Bases , Bovinos , DNA Bacteriano/genética , Ácidos Graxos/química , Feminino , Filogenia , Prevotella , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
6.
Anim Sci J ; 92(1): e13637, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34592786

RESUMO

The aim of this study was to develop prediction equations for methane (CH4 ) emissions from lactating cows using the CH4 /carbon dioxide (CO2 ) ratio in the breath measured in the automatic milking system (AMS) and to evaluate the predicted values and factors affecting the CH4 /CO2 ratio. The model development was conducted using a dataset determined in respiration chambers or head boxes (n = 121). Then, gas measurements in the AMS as well as in the head box were carried out with six lactating cows fed one of three different levels of neutral detergent fiber (NDF) content, following a 3 × 3 Latin square experimental design. The obtained equation that is suitable for practical use on farms to predict CH4 was CH4 (L/day) = -507 + 0.536 live weight (kg) + 8.76 energy-corrected milk (kg/day) + 5,029 CH4 /CO2 (adjusted R2 = 0.83; root mean square error = 40.8 L/day). Results showed that the predicted values correlated positively with the observed values, the determined CH4 /CO2 ratio increased with increasing dietary NDF content, and the detected eructation rate was in the normal range. On the other hand, the CH4 /CO2 ratio was affected by the time interval between measurement and last eating before the measurement.


Assuntos
Dióxido de Carbono , Metano , Animais , Bovinos , Dieta , Fibras na Dieta , Feminino , Lactação , Metano/análise , Leite/química , Taxa Respiratória
7.
Anim Sci J ; 92(1): e13503, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33398898

RESUMO

The effect of cashew nut shell liquid (CNSL) feeding on bacterial and archaeal community of the bovine rumen was investigated by analyzing clone libraries targeting 16S rRNA genes, methyl-coenzyme reductase A-encoding genes (mcrA), and their respective transcripts. Rumen samples were collected from three non-lactating cows fed on a hay and concentrate diet with or without CNSL supplementation. DNA and complementary DNA (cDNA) libraries were generated for investigating rumen microbial communities. MiSeq analysis also was performed to understand more comprehensively the changes in the microbial community structures. Following CNSL supplementation, the number of operational taxonomical unit (OTU) and diversity indices of bacterial and archaeal community were decreased. Bacterial OTUs belonging to Proteobacteria, including Succinivibrio, occurred at a higher frequency with CNSL feeding, especially in cDNA libraries. The methanogenic archaeal community became dominated by Methanomicrobium. A bacterial community shift also was observed in the MiSeq data, indicating that CNSL increased the proportion of Succinivibrio and other genera known to be involved in propionate production. Methanogenic archaeal community shifts to increase Methanoplanus and to decrease Methanobrevibacter also were observed. Together, these results imply the occurrence of significant changes in rumen communities, not only for bacteria but also for methanogens, following CNSL feeding.


Assuntos
Anacardium , Ração Animal , Bovinos/metabolismo , Bovinos/microbiologia , Dieta/veterinária , Suplementos Nutricionais , Microbioma Gastrointestinal/fisiologia , Metano/metabolismo , Microbiota , Propionatos/metabolismo , Rúmen/microbiologia , Animais , Methanobrevibacter/metabolismo , Methanomicrobiaceae/metabolismo
8.
Anim Sci J ; 90(12): 1556-1566, 2019 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-31650688

RESUMO

Ruminant animals are able to convert plant materials (grain and the human-indigestible portion of carbohydrates) to milk and meat. In this conversion, most of the plant materials are digested by rumen fermentation and are changed to short-chain fatty acids, microbial cells, and methane, which is released into the atmosphere. The relationships among feed, rumen fermentation, and milk production are poorly understood. Here we report a novel indicator of characteristics of rumen fermentation, theoretical turnover rate (TTOR) of the rumen liquid fraction. The TTOR was calculated from the presumed rumen volume (PRV) which is estimated by dividing the methane yield by the methane concentration of rumen fluid. The formula for the TTOR is: TTOR = PRV/body weight0.75 . Our present analyses confirm that the TTOR as an indicator is capable of connecting feed, rumen fermentation, and milk production, because dry matter intake/TTOR showed a strong correlation with milk yield/TTOR. In addition, the TTOR may be related to ruminal pH, as we observed that the ruminal pH decreased as the TTOR increased. We propose that the TTOR is a factor characterizing rumen fermentation and a good indicator of the productivity of ruminants and dysbiosis of the rumen microbiome.


Assuntos
Ração Animal , Fermentação , Lactação , Rúmen/metabolismo , Ração Animal/análise , Animais , Bovinos , Digestão , Ácidos Graxos Voláteis/metabolismo , Feminino , Concentração de Íons de Hidrogênio , Metano/metabolismo , Leite/química , Rúmen/anatomia & histologia , Rúmen/microbiologia
9.
Anim Sci J ; 90(10): 1362-1376, 2019 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-31407448

RESUMO

We investigated potential relationships between rumen microbiota and milk production in dairy cows during the transition period. Twelve dairy cows were divided into a low-yield (LY) or high-yield (HY) group based on their milk yield. Rumen samples were taken from dairy cows at 3 weeks before parturition, and at 4, 8, and 12 weeks after parturition. 16S rDNA-based metagenomic analysis showed that diversities of rumen microbiota in both groups were similar and the number of operational taxonomic units (OTUs) was lower in the postpartum than prepartum period in both groups. The abundance of Bacteroidetes and ratio of Bacteroidetes:Firmicutes was higher in the HY than the LY group. OTUs assigned to Prevotella bryantii, Fibrobacter succinogenes, Ruminococcus albus, Butyrivibrio fibrisolvens, and Succinivibrio sp. were abundant in the HY group. These OTUs were significantly related to the propionate molar proportion of rumen fluids in the HY group. OTUs assigned to Lachnospiraceae, Bifidobacterium sp. and Saccharofermentans were dominant in the LY group. Predictive functional profiling revealed that abundance of gene families involved in amino acid and vitamin metabolism was higher in the HY than the LY group. These results suggest that the community structure and fermentation products of rumen microbiota could be associated with milk production of dairy cows.


Assuntos
Rúmen/microbiologia , Animais , Bovinos , Feminino , Microbioma Gastrointestinal , Lactação , Metagenoma , Leite , Parto , Período Pós-Parto , Gravidez
10.
FEMS Microbiol Lett ; 364(15)2017 08 15.
Artigo em Inglês | MEDLINE | ID: mdl-28859317

RESUMO

Fibrobacter succinogenes rapidly colonizes the preruminant calf rumen and becomes a dominant cellulolytic bacterium in the rumen after weaning. Although F. succinogenes actively degrades cellulose in the rumen, it seems that there is no or little of its substrate, cellulose, in the rumen of preweaned calves. We thus evaluated the ability of F. succinogenes to utilize lactose, a main sugar of milk, with or without the presence of cellobiose. We grew F. succinogenes S85 on media containing 2.5% lactose combined with 0%-0.2% cellobiose or a medium with 0.2% cellobiose but without lactose. The generation times on the 0.2% cellobiose medium and the 2.5% lactose medium were 1.9 and 16.2 h, respectively. The bacterium showed rapid growth on cellobiose and diauxic growth on the lactose media containing 0.05%-0.2% cellobiose. Moreover, the production of ß-galactosidase was low in the presence of 0.1%-0.2% cellobiose. Since the ß-galactosidase contained a signal peptide and a Por secretion system C-terminal sorting domain, we speculate that the ß-galactosidase would be secreted from the bacterial cells by the Por secretion system. Our data indicate the possibility that F. succinogenes could colonize preruminant calf rumen, consuming the lactose present in cow milk.


Assuntos
Celobiose/metabolismo , Fibrobacter/crescimento & desenvolvimento , Fibrobacter/metabolismo , Lactose/metabolismo , Animais , Sistemas de Secreção Bacterianos/genética , Bovinos , Meios de Cultura/química , Fibrobacter/efeitos dos fármacos , Fibrobacter/genética , Rúmen/microbiologia , beta-Galactosidase/biossíntese , beta-Galactosidase/genética
11.
Anim Sci J ; 88(7): 974-982, 2017 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-27878924

RESUMO

Relationship between rumen fermentation parameters, blood biochemical profiles and milk production traits in different yielding dairy cows during early lactation was investigated. Twelve dairy cows were divided into two groups based on their milk yield, that is low-yield (LY) and high-yield (HY) groups. Rumen fluid and blood were collected at 3 weeks prepartum and 4, 8 and 12 weeks postpartum. Results showed that proportions of acetate, propionate to total short chain fatty acids and acetate : propionate ratio were changed (P < 0.05) in both groups during the peripartum period, whereas butyrate and acetate : butyrate ratio were only altered in the HY group. Blood cholesterol, beta-hydroxybutyric acid (BHBA) and glutamic oxaloacetic transaminase in the HY group were higher (P < 0.01) than those in the LY group. Principal component analysis revealed that milk yield and milk compositions were differently clustered between groups. These parameters showed similar direction with dry matter intake in the HY group and adverse direction in the LY group. Linear regression analysis indicated that butyrate was positively correlated with BHBA (P < 0.05) in the HY group. This study suggests that cows in the HY group seem to accommodate appropriately to negative energy balance in early lactation through rumen fermentation.


Assuntos
Ração Animal , Bovinos/metabolismo , Bovinos/fisiologia , Dieta/veterinária , Fermentação/fisiologia , Lactação/fisiologia , Rúmen/metabolismo , Rúmen/fisiologia , Ácido 3-Hidroxibutírico/sangue , Acetatos/sangue , Acetatos/metabolismo , Animais , Aspartato Aminotransferases/sangue , Colesterol/sangue , Metabolismo Energético , Ácidos Graxos Voláteis/sangue , Ácidos Graxos Voláteis/metabolismo , Feminino , Leite/química , Período Periparto , Propionatos/sangue , Propionatos/metabolismo , Tiocarbamatos/sangue , Tiocarbamatos/metabolismo
12.
Anim Sci J ; 87(11): 1363-1370, 2016 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-26875748

RESUMO

To find the abundant and characteristic fibrolytic enzyme-coding gene expressed in fiber-associating microbiota, a metatranscriptomic data set was obtained from fiber-associating microbiota, and it was compared with that of rumen fluid-floating microbiota and two metagenomic data sets. Fibrolytic rumen bacteria associate with plant polysaccharide and hydrolyze it in the rumen. We obtained a metatranscriptomic assembly from fiber-associating microbiota in three ruminally fistulated Holstein cows fed timothy (Phleum pratense) hay. Each metatranscriptomic data set involved over a thousand of the glycoside hydrolase (GH) gene transcripts that accounted for about 1% of total protein coding gene transcripts. Three-quarters of the total GH gene transcripts were dominated by non-structural oligosaccharide-acting hydrolase gene transcripts. In the fiber-associating microbiota, endo-cellulase coding gene families, especially GHs 9 and 5, were abundantly detected, and GHs 9, 11, 30 and 43, carbohydrate esterase 8 and carbohydrate-binding module 6 were characteristically detected. Most fibrolytic gene transcripts assigned to Fibrobacter succinogenes were detected in fiber-associating sections, and GHs 45, 44, 74, 11, 30 and 16 were Fibrobacter-characteristically detected. The metatranscriptomic assembly highlighted the characteristic fibrolytic enzymes expressed in the fiber-associated rumen microbiota and offered access to the fibrolytic activities in each fibrolytic bacteria.


Assuntos
Celulases/genética , Fibrobacter/enzimologia , Glicosídeo Hidrolases/genética , Microbiota , Polissacarídeos/metabolismo , Rúmen/microbiologia , Ração Animal , Animais , Bovinos , Feminino , Hidrólise , Phleum/química
13.
Anim Sci J ; 87(5): 666-73, 2016 May.
Artigo em Inglês | MEDLINE | ID: mdl-26277986

RESUMO

Although rumen bacterial communities vary depending on many factors such as diet, age and physiological conditions, a core microbiota exists within the rumen. In many natural environments, some bacteria use a quorum-sensing (QS) system to regulate their physiological activities. However, very limited information is available about QS systems in rumen. To investigate the autoinducer 2 (AI-2)-mediated QS system in rumen, we detected genes (luxS) encoding the AI-2 synthase (LuxS), from three datasets embedded in metagenomics RAST server (MG-RAST) and from a metatranscriptome dataset. We collected 135 luxS genes from the metagenomic datasets, which were presumed to originate from Bacteroidetes, Firmicutes, Fusobacteria and Actinobacteria, and 34 luxS genes from the metatranscriptome dataset, which probably originated from Bacteroidetes, Firmicutes and Spirochaetes. Because the essential amino acids for LuxS activity were conserved in the LuxS homologues predicted from luxS gene sequences from both datasets, the LuxS homologues probably function in the rumen. Since the largest number of sequences of luxS genes were collected from the genera Prevotella, Ruminococcus and Eubacterium, which include many fibrolytic bacteria and constituent members of biofilm on feed particles, an AI-2-mediated QS system is likely involved in biofilm formation and fibrolytic activity in the rumen.


Assuntos
Actinobacteria/genética , Proteínas de Bactérias/genética , Bacteroidetes/genética , Liases de Carbono-Enxofre/genética , Conjuntos de Dados como Assunto , Fusobactérias/genética , Metagenômica/métodos , Rúmen/microbiologia , Análise de Sequência/métodos , Transcriptoma , Animais , Biofilmes , Bovinos , Homosserina/análogos & derivados , Lactonas , Percepção de Quorum , Spirochaeta/genética
14.
Front Microbiol ; 6: 1087, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26528253

RESUMO

Japanese goats fed a diet of 50% Timothy grass and 50% concentrate with increasing levels of the anti-methanogenic compound, bromochloromethane (BCM) were investigated with respect to the microbial population and functional shifts in the rumen. Microbial ecology methods identified species that exhibited positive and negative responses to the increasing levels of BCM. The methane-inhibited rumen appeared to adapt to the higher H2 levels by shifting fermentation to propionate which was mediated by an increase in the population of H2-consuming Prevotella and Selenomonas spp. Metagenomic analysis of propionate production pathways was dominated by genomic content from these species. Reductive acetogenic marker gene libraries and metagenomics analysis indicate that reductive acetogenic species do not play a major role in the BCM treated rumen.

15.
FEMS Microbiol Ecol ; 88(3): 528-37, 2014 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-24612331

RESUMO

The phylotypes of rumen bacteria have increased by the accumulation of 16S rRNA gene sequences, and they show a complex microbial community structure in the rumen. However, most of the biochemical properties of rumen bacteria defined by phylotypes are still unknown. We attempted to improve the culturability of cellulolytic bacteria from the rumen using an agar medium (CA) and a gellan gum medium (CG) containing azo-carboxymethylcellulose as a carbon source. We isolated 129 strains from these media, and the numbers of isolates that showed filter paperase, carboxymethylcellulase and xylanase activity were 51, 117 and 105, respectively. The isolates were classified into six phyla by 16S rRNA gene sequences. In accordance with other studies, fibre-adherent rumen bacteria from the phylum Firmicutes were the most abundant cultured isolates obtained (82.2%). Isolates that were unclassified (< 97% similarity) totalled 19.4%, indicating that the media used in this study was successfully able to improve the culturability of rumen cellulolytic bacteria. Moreover, as the Chao1 richness of CG was higher than that of CA, we estimated that, compared with CA, CG supports the growth of a wide variety of rumen bacteria. These results demonstrate that culturable species of ruminal cellulolytic bacteria can be increased using improved culture media.


Assuntos
Bactérias/classificação , Bactérias/enzimologia , Rúmen/microbiologia , Ágar , Animais , Bactérias/crescimento & desenvolvimento , Bactérias/isolamento & purificação , Biodiversidade , Bovinos , Celulase/metabolismo , Celulose/metabolismo , Meios de Cultura/química , Dados de Sequência Molecular , Filogenia , Polissacarídeos Bacterianos , RNA Ribossômico 16S/genética , Xilosidases/metabolismo
16.
Anim Sci J ; 85(1): 25-31, 2014 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-23638678

RESUMO

Effect of the methane inhibitor, bromochloromethane (BCM) and dietary substrate, fumarate, on microbial community structure of acetogen bacteria in the bovine rumen was investigated through analysis of the formyltetrahydrofolate synthetase gene (fhs). The fhs sequences obtained from BCM-untreated, BCM-treated, fumarate-untreated and fumarate-treated bovine rumen were categorized into homoacetogens and nonhomoacetogenic bacteria by homoacetogen similarity scores. Phylogenetic tree analysis indicated that most of the fhs sequences categorized into homoacetogens were divided into nine clusters, which were in close agreement with a result shown in a self-organizing map. The diversity of the fhs sequences from the BCM-treated rumen was significantly different from those from BCM-non-treated rumen. Principal component analysis also showed that addition of BCM to the rumen altered the population structure of acetogenic bacteria significantly but the effect of fumarate was comparatively minor. These results indicate that BCM affects diversity of actogens in the bovine rumen, and changes in acetogenic community structure in response to methane inhibitors may be caused by different mechanisms.


Assuntos
Acetobacterium/efeitos dos fármacos , Acetobacterium/enzimologia , Carga Bacteriana/efeitos dos fármacos , Bovinos/microbiologia , Formiato-Tetra-Hidrofolato Ligase/genética , Fumaratos/farmacologia , Variação Genética/efeitos dos fármacos , Variação Genética/genética , Hidrocarbonetos Halogenados/farmacologia , Filogenia , Rúmen/microbiologia , Animais
17.
Anim Sci J ; 85(3): 254-61, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24261635

RESUMO

To determine the relationship between Fibrobacter succinogenes and other rumen bacteria, the bacterial community structure on fiber was analyzed by using two different materials. These were ruminally incubated orchard grass hay stems without and with preincubation with F. succinogenes (natural and artificial consortia, respectively). The natural consortium mainly consisted of Firmicutes (56.6%) and Bacteroidetes (33.1%), while the artificial consortium showed a significantly higher proportion of Firmicutes (85.5%) and a lower proportion of Bacteroidetes (4.6%). At species or genus level, Butyrivibrio fibrisolvens, the U2 group, Ruminococcus albus and Lachnospiraceae incertae sedis made up a higher proportion in the artificial consortium. The most dominant bacterial group was the Butyrivibrio-Pseudobutyrivibrio-Lachnospiraceae incertae sedis group, which accounted for 19.7% in the natural and 29.5% in the artificial consortium. Within the genus Butyrivibrio, the phylogenetic groups SA and VA2 and phylogeny-undefined Butyribivrio, but not VA1, were detected at high frequency in the artificial consortium. These results suggest that ecological and possibly functional relationships exist in the rumen among F. succinogenes, a subset of B. fibrisolvens, the U2 group, R. albus and Lachnospiraceae incertae sedis.


Assuntos
Ração Animal , Dactylis , Fibrobacter/fisiologia , Rúmen/microbiologia , Animais , Bacteroides/fisiologia , Fibras na Dieta/metabolismo , Fibrobacter/isolamento & purificação , Masculino , Dados de Sequência Molecular , Caules de Planta/metabolismo , Reação em Cadeia da Polimerase em Tempo Real , Ruminococcus/fisiologia , Ovinos
18.
Anim Sci J ; 85(3): 227-32, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24128067

RESUMO

Effect of cashew nut shell liquid (CNSL), a methane inhibitor, on bovine rumen fermentation was investigated through analysis of the metabolic hydrogen flow estimated from concentrations of short-chain fatty acids (SCFA) and methane. Three cows were fed a concentrate and hay diet without or with a CNSL-containing pellet. Two trials were conducted using CNSL pellets blended with only silica (trial 1) or with several other ingredients (trial 2). Methane production was measured in a respiration chamber system, and energy balance and nutrient digestibility were monitored. The estimated flow of metabolic hydrogen demonstrated that a part of metabolic hydrogen was used for hydrogen gas production, and a large amount of it flowed into production of methane and SCFA in both trial 1 and 2, when CNSL was administered to the bovine rumen. The results obtained by regression analyses showed that the effect of CNSL supply on methane reduction was coupled with a significant (P < 0.01) decrease of acetate and a significant (P < 0.01) increase of propionate and hydrogen gas. These findings reveal that CNSL is able to reduce methane and acetate production, and to increase hydrogen gas and propionate production in vivo.


Assuntos
Anacardium , Ração Animal , Bovinos/metabolismo , Hidrogênio/metabolismo , Rúmen/metabolismo , Animais , Ácidos Graxos Voláteis/metabolismo , Feminino , Fermentação , Metano/metabolismo , Propionatos/metabolismo
19.
Anim Sci J ; 83(10): 696-703, 2012 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-23035709

RESUMO

A series of in sacco and in vitro studies were carried out to evaluate bean husks for activation of fibrolytic rumen bacteria and rice straw digestion. First, lablab bean husk, chickpea husk and rice straw were suspended in the rumen of sheep to analyze the bacterial consortium developed on each fiber source. Known members of fiber-associating bacteria were found on both lablab bean husk and rice straw, but some of these bacteria were lacking on chickpea husk. Second, a pure culture study was carried out using six strains of Fibrobacter succinogenes. Both husks stimulated the growth of all tested strains, including a strain that did not grow on rice straw. The strain OS128 that showed the highest growth on rice straw displayed even higher growth on lablab bean husk without a time lag. Finally, two-step incubations were carried out to determine whether prior incubation of rumen fluid with husks stimulates subsequent rice straw digestion. Higher digestibility of rice straw was recorded in the second-round incubation following the first incubation with bean husks. These results suggest that the tested bean husks improve the digestion of rice straw by activating fibrolytic F. succinogenes and other associated bacteria.


Assuntos
Ração Animal , Fibras na Dieta , Fibrobacter/fisiologia , Rúmen/microbiologia , Ovinos/fisiologia , Animais , Digestão , Oryza , Alimentos de Soja
20.
Environ Microbiol ; 14(6): 1420-31, 2012 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-22414212

RESUMO

Given the growing concerns over human and animal health issues related to confined animal feeding operations, an in-depth examination is required to monitor for airborne bacteria and associated antibiotic resistance genes. Our 16S rRNA-based pyrosequencing revealed that the airborne microbial community skewed towards a higher abundance of Firmicutes (> 59.2%) and Bacteroidetes (4.2-31.4%) within the confinement buildings, while the office environment was predominated by Proteobacteria (55.2%). Furthermore, bioaerosols in the confinement buildings were sporadically associated with genera of potential pathogens, and these genera were more frequently observed in the bioaerosols of pig and layer hen confinement than the turkey confinement buildings and office environment. High abundances of tetracycline resistance genes (9.55 × 10(2) to 1.69 × 10(6) copies ng(-1) DNA) were also detected in the bioaerosols sampled from confinement buildings. Bacterial lineages present in the poultry bioaerosols clustered apart from those present in the pig bioaerosols and among the different phases of pig production, suggesting that different livestock as well as production phase were associated with a distinct airborne microbial community. By understanding the diversity of biotic contaminants associated with the different confinement buildings, this study facilitates the implementation of better management strategies to minimize potential health impacts on both livestock and humans working in this environment.


Assuntos
Microbiologia do Ar , Poluição do Ar em Ambientes Fechados/análise , Bactérias/classificação , Abrigo para Animais , Aves Domésticas , Suínos , Poluição do Ar em Ambientes Fechados/estatística & dados numéricos , Criação de Animais Domésticos , Animais , Bactérias/crescimento & desenvolvimento , Monitoramento Ambiental , Humanos , Exposição por Inalação/estatística & dados numéricos , Resistência a Tetraciclina/genética
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