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1.
Biodivers Data J ; 11: e109431, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37840602

RESUMO

Background: The dataset presented here is an achievement of the H2020 European project "Integrated Pest Management of the Invasive Japanese Beetle, Popilliajaponica (IPM-Popillia)". This project addresses the challenge of a new risk to plant health in Europe, the invasion of the Japanese beetle, Popilliajaponica (Newman, 1838) (Coleoptera, Rutelidae) and provides an environmentally friendly IPM Toolbox to control the expanding pest populations across Europe. This study aims to present the records of terrestrial arthropod diversity with a special focus on four groups belonging to Carabids and Staphylinid beetles (Coleoptera), Opiliones and Anisolabididae (Dermaptera), collected with the potential to be used as biocontrol agents against P.japonica in future Integrated Pest Management programmes. A thorough sampling programme was conducted in maize and pasture fields in two Islands of the Azores (São Miguel and São Jorge) in the summer of 2022. New information: We provided an inventory of the arthropods recorded in two Azorean agroecosystems (maize and pasture fields) from São Miguel and São Jorge Islands. A total of ten maize and ten pasture fields were sampled and a total of 360 pitfall traps were installed, 216 in São Miguel and 144 in São Jorge, for seven consecutive days in August and September of 2022.We collected 18559 specimens belonging to the phylum Arthropoda, four classes, twelve orders, twenty-six families and forty morphospecies (two identified at the family level as carabid and Staphylinid larvae and 38 identified at the species level). We identified 38 taxa at the species level (n = 18281). Of the 38 identified taxa, 18 species were predators, 15 were plant feeders and five were omnivores. The 18 predators belong to the following families: 10 species were Carabidae, two Staphylinidae, one Anisolabididae, one Chrysopidae, one Leiobunidae, one Nabidae, one Phalangiidae and one Scathophagidae. Concerning the origin of the predators, we recorded five native species: two Carabidae, one Leiobunidae, one Scathophagidae and one Nabidae. The other 13 predator species were introduced or indeterminate.

2.
Microorganisms ; 11(8)2023 Jul 31.
Artigo em Inglês | MEDLINE | ID: mdl-37630532

RESUMO

Popillia japonica (Coleoptera: Scarabaeidae), is an emerging invasive pest in Europe and America. In the Azores, this pest was first found on Terceira Island during the sixties and soon spread to other islands. The rate of infestation differs between islands, and we hypothesized that microbiome composition could play a role. Therefore, we sampled 3rd instar larvae and soil from sites with high and low infestation rates to analyze the microbiome using next-generation sequencing. We analyzed twenty-four 16S DNA libraries, which resulted in 3278 operational taxonomic units. The alpha and beta diversity of the soil microbiome was similar between sites. In contrast, the larvae from high-density sites presented a higher bacterial gut diversity than larvae from low-density sites, with biomarkers linked to plant digestion, nutrient acquisition, and detoxification. Consequently, larvae from high-density sites displayed several enriched molecular functions associated with the families Ruminococcaceae, Clostridiaceae and Rikenellaceae. These bacteria revealed a supportive function by producing several CAZyme families and other proteins. These findings suggest that the microbiome must be one drive for the increase in P. japonica populations, thus providing a checkpoint in the establishment and spread of this pest.

3.
Toxins (Basel) ; 14(11)2022 11 02.
Artigo em Inglês | MEDLINE | ID: mdl-36356004

RESUMO

Entomopathogenic nematodes are used as biological control agents against a broad range of insect pests. We ascribed the pathogenicity of these organisms to the excretory/secretory products (ESP) released by the infective nematode. Our group characterized different virulence factors produced by Steinernema carpocapsae that underlie its success as an insect pathogen. A novel ShK-like peptide (ScK1) from this nematode that presents high sequence similarity with the ShK peptide from a sea anemone was successfully produced recombinantly in Escherichia coli. The secondary structure of ScK1 appeared redox-sensitive, exhibiting a far-UV circular dichroism spectrum consistent with an alpha-helical secondary structure. Thermal denaturation of the ScK1 allowed estimating the melting temperature to 59.2 ± 0.1 °C. The results from toxicity assays using Drosophila melanogaster as a model show that injection of this peptide can kill insects in a dose-dependent manner with an LD50 of 16.9 µM per adult within 24 h. Oral administration of the fusion protein significantly reduced the locomotor activity of insects after 48 h (p < 0.05, Tukey's test). These data show that this nematode expresses insecticidal peptides with potential as next-generation insecticides.


Assuntos
Drosophila melanogaster , Nematoides , Animais , Insetos , Agentes de Controle Biológico , Virulência
4.
Sci Rep ; 12(1): 14237, 2022 08 20.
Artigo em Inglês | MEDLINE | ID: mdl-35987963

RESUMO

Steinernema carpocapsae is an entomopathogenic nematode (EPN) that rapidly infects and kills a wide range of insect hosts and has been linked to host immunosuppression during the initial stages of infection. The lethal nature of S. carpocapsae infections has previously been credited to its symbiotic bacteria; however, it has become evident that the nematodes are able to effectively kill their hosts independently through their excretion/secretion products (ESPs). Here we examined how the adult Drosophila melanogaster immune system is modulated in response to S. carpocapsae ESPs in an attempt to ascertain individual pathogenic contributions of the isolated compound. We found that the S. carpocapsae ESPs decrease the survival of D. melanogaster adult flies, they induce the expression of certain antimicrobial peptide-encoding genes, and they cause significant reduction in phenoloxidase enzyme activity and delay in the melanization response in males flies. We also report that S. carpocapsae ESPs affect hemocyte numbers in both male and female individuals. Our results indicate the manipulative role of EPN ESPs and reveal sex-specific differences in the host response against nematode infection factors. These findings are beneficial as they promote our understanding of the molecular basis of nematode pathogenicity and the parasite components that influence nematode-host interactions.


Assuntos
Infecções por Nematoides , Rabditídios , Animais , Drosophila melanogaster/genética , Feminino , Interações Hospedeiro-Parasita , Imunidade , Masculino
5.
J Microbiol Biotechnol ; 31(2): 327-337, 2021 Feb 28.
Artigo em Inglês | MEDLINE | ID: mdl-33148943

RESUMO

Fibrinolytic enzymes with a direct mechanism of action and safer properties are currently requested for thrombolytic therapy. This paper reports on a new enzyme capable of degrading blood clots directly without impairing blood coagulation. This enzyme is also non-cytotoxic and constitutes an alternative to other thrombolytic enzymes known to cause undesired side effects. Twenty-four Bacillus isolates were screened for production of fibrinolytic enzymes using a fibrin agar plate. Based on produced activity, isolate S127e was selected and identified as B. subtilis using the 16S rDNA gene sequence. This strain is of biotechnological interest for producing high fibrinolytic yield and consequently has potential in the industrial field. The purified fibrinolytic enzyme has a molecular mass of 27.3 kDa, a predicted pI of 6.6, and a maximal affinity for Ala-Ala-Pro-Phe. This enzyme was almost completely inhibited by chymostatin with optimal activity at 48°C and pH 7. Specific subtilisin features were found in the gene sequence, indicating that this enzyme belongs to the BPN group of the S8 subtilisin family and was assigned as AprE127. This subtilisin increased thromboplastin time by 3.7% (37.6 to 39 s) and prothrombin time by 3.2% (12.6 to 13 s), both within normal ranges. In a whole blood euglobulin assay, this enzyme did not impair coagulation but reduced lysis time significantly. Moreover, in an in vitro assay, AprE127 completely dissolved a thrombus of about 1 cc within 50 min and, in vivo, reduced a thrombus prompted in a rat tail by 11.4% in 24 h compared to non-treated animals.


Assuntos
Bacillus subtilis/enzimologia , Proteínas de Bactérias/isolamento & purificação , Fibrinolíticos/isolamento & purificação , Subtilisinas/isolamento & purificação , Trombose/tratamento farmacológico , Animais , Bacillus subtilis/química , Bacillus subtilis/genética , Proteínas de Bactérias/administração & dosagem , Proteínas de Bactérias/química , Células Sanguíneas/efeitos dos fármacos , Células Sanguíneas/fisiologia , Coagulação Sanguínea/efeitos dos fármacos , Feminino , Fibrinolíticos/administração & dosagem , Fibrinolíticos/química , Hemólise/efeitos dos fármacos , Humanos , Concentração de Íons de Hidrogênio , Cinética , Peso Molecular , Tempo de Protrombina , Ratos , Ovinos , Subtilisinas/administração & dosagem , Subtilisinas/química , Trombose/fisiopatologia
6.
Insects ; 11(6)2020 Jun 05.
Artigo em Inglês | MEDLINE | ID: mdl-32516962

RESUMO

Entomopathogenic nematodes (EPNs) are efficient insect parasites, that are known for their mutualistic relationship with entomopathogenic bacteria and their use in biocontrol. EPNs produce bioactive molecules referred to as excreted/secreted products (ESPs), which have come to the forefront in recent years because of their role in the process of host invasion and the modulation of its immune response. In the present study, we confirmed the production of ESPs in the EPN Heterorhabditis bacteriophora, and investigated their role in the modulation of the phenoloxidase cascade, one of the key components of the insect immune system. ESPs were isolated from 14- and 21-day-old infective juveniles of H. bacteriophora, which were found to be more virulent than newly emerged nematodes, as was confirmed by mortality assays using Galleria mellonella larvae. The isolated ESPs were further purified and screened for the phenoloxidase-inhibiting activity. In these products, a 38 kDa fraction of peptides was identified as the main candidate source of phenoloxidase-inhibiting compounds. This fraction was further analyzed by mass spectrometry and the de novo sequencing approach. Six peptide sequences were identified in this active ESP fraction, including proteins involved in ubiquitination and the regulation of a Toll pathway, for which a role in the regulation of insect immune response has been proposed in previous studies.

7.
Zookeys ; (688): 1-13, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-29118589

RESUMO

Pontoscolex corethrurus (Müller, 1857) plays an important role in tropical soil ecosystems and has been widely used as an animal model for a large variety of ecological studies in particular due to its common presence and generally high abundance in human-disturbed tropical soils. In this study we describe the complete mitochondrial genome of the peregrine earthworm P. corethrurus. This is the first record of a mitochondrial genome within the Rhinodrilidae family. Its mitochondrial genome is 14 835 bp in length containing 37 genes (13 protein-coding genes (PCG) 2 rRNA genes and 22 tRNA genes). It has the same gene content and structure as in other sequenced earthworms but unusual among invertebrates it hasseveral overlapping open reading frames. All genes are encoded on the same strand. Most of the PCGs use ATG as the start codon except for ND3 which uses GTG as the start codon. The A+T content of the mitochondrial genome is 59.9% (31.8% A 28.1% T 14.6% G and 25.6% for C). The annotated genome sequence has been deposited in GenBank under the accession number KT988053.

8.
BMC Evol Biol ; 17(1): 108, 2017 04 26.
Artigo em Inglês | MEDLINE | ID: mdl-28446150

RESUMO

BACKGROUND: The entomopathogenic nematode Steinernema carpocapsae has been used worldwide as a biocontrol agent for insect pests, making it an interesting model for understanding parasite-host interactions. Two models propose that these interactions are co-evolutionary processes in such a way that equilibrium is never reached. In one model, known as "arms race", new alleles in relevant genes are fixed in both host and pathogens by directional positive selection, producing recurrent and alternating selective sweeps. In the other model, known as"trench warfare", persistent dynamic fluctuations in allele frequencies are sustained by balancing selection. There are some examples of genes evolving according to both models, however, it is not clear to what extent these interactions might alter genome-level evolutionary patterns and intraspecific diversity. Here we investigate some of these aspects by studying genomic variation in S. carpocapsae and other pathogenic and free-living nematodes from phylogenetic clades IV and V. RESULTS: To look for signatures of an arms-race dynamic, we conducted massive scans to detect directional positive selection in interspecific data. In free-living nematodes, we detected a significantly higher proportion of genes with sites under positive selection than in parasitic nematodes. However, in these genes, we found more enriched Gene Ontology terms in parasites. To detect possible effects of dynamic polymorphisms interactions we looked for signatures of balancing selection in intraspecific genomic data. The observed distribution of Tajima's D values in S. carpocapsae was more skewed to positive values and significantly different from the observed distribution in the free-living Caenorhabditis briggsae. Also, the proportion of significant positive values of Tajima's D was elevated in genes that were differentially expressed after induction with insect tissues as compared to both non-differentially expressed genes and the global scan. CONCLUSIONS: Our study provides a first portrait of the effects that lifestyle might have in shaping the patterns of selection at the genomic level. An arms-race between hosts and pathogens seems to be affecting specific genetic functions but not necessarily increasing the number of positively selected genes. Trench warfare dynamics seem to be acting more generally in the genome, likely focusing on genes responding to the interaction, rather than targeting specific genetic functions.


Assuntos
Evolução Biológica , Interações Hospedeiro-Parasita , Insetos/genética , Insetos/parasitologia , Nematoides/genética , Nematoides/fisiologia , Animais , Caenorhabditis/genética , Frequência do Gene , Genoma , Nematoides/classificação , Filogenia
9.
Sci Rep ; 6: 37536, 2016 11 23.
Artigo em Inglês | MEDLINE | ID: mdl-27876851

RESUMO

The entomopathogenic nematode Steinernema carpocapsae has been widely used for the biological control of insect pests. It shares a symbiotic relationship with the bacterium Xenorhabdus nematophila, and is emerging as a genetic model to study symbiosis and pathogenesis. We obtained a high-quality draft of the nematode's genome comprising 84,613,633 bp in 347 scaffolds, with an N50 of 1.24 Mb. To improve annotation, we sequenced both short and long RNA and conducted shotgun proteomic analyses. S. carpocapsae shares orthologous genes with other parasitic nematodes that are absent in the free-living nematode C. elegans, it has ncRNA families that are enriched in parasites, and expresses proteins putatively associated with parasitism and pathogenesis, suggesting an active role for the nematode during the pathogenic process. Host and parasites might engage in a co-evolutionary arms-race dynamic with genes participating in their interaction showing signatures of positive selection. Our analyses indicate that the consequence of this arms race is better characterized by positive selection altering specific functions instead of just increasing the number of positively selected genes, adding a new perspective to these co-evolutionary theories. We identified a protein, ATAD-3, that suggests a relevant role for mitochondrial function in the evolution and mechanisms of nematode parasitism.


Assuntos
Evolução Biológica , Proteoma/metabolismo , Rabditídios/genética , Rabditídios/metabolismo , Transcriptoma/genética , Animais , Teorema de Bayes , Cromossomos/genética , Ontologia Genética , Genoma Helmíntico , Proteínas de Helminto/metabolismo , Anotação de Sequência Molecular , Peptídeo Hidrolases/metabolismo , Filogenia , Seleção Genética , Análise de Sequência de DNA
10.
Mar Biotechnol (NY) ; 18(3): 372-83, 2016 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-27194026

RESUMO

Marine bioadhesives perform in ways that manmade products simply cannot match, especially in wet environments. Despite their technological potential, bioadhesive molecular mechanisms are still largely understudied, and sea urchin adhesion is no exception. These animals inhabit wave-swept shores, relying on specialized adhesive organs, tube feet, composed by an adhesive disc and a motile stem. The disc encloses a duo-gland adhesive system, producing adhesive and deadhesive secretions for strong reversible substratum attachment. The disclosure of sea urchin Paracentrotus lividus tube foot disc proteome led to the identification of a secreted adhesion protein, Nectin, never before reported in adult adhesive organs but, that given its adhesive function in eggs/embryos, was pointed out as a putative substratum adhesive protein in adults. To further understand Nectin involvement in sea urchin adhesion, Nectin cDNA was amplified for the first time from P. lividus adhesive organs, showing that not only the known Nectin mRNA, called Nectin-1 (GenBank AJ578435), is expressed in the adults tube feet but also a new mRNA sequence, called Nectin-2 (GenBank KT351732), differing in 15 missense nucleotide substitutions. Nectin genomic DNA was also obtained for the first time, indicating that both Nectin-1 and Nectin-2 derive from a single gene. In addition, expression analysis showed that both Nectins are overexpressed in tube feet discs, its expression being significantly higher in tube feet discs from sea urchins just after collection from the field relative to sea urchin from aquarium. These data further advocate for Nectin involvement in sea urchin reversible adhesion, suggesting that its expression might be regulated according to the hydrodynamic conditions.


Assuntos
Processamento Alternativo , Moléculas de Adesão Celular/genética , Mecanotransdução Celular/genética , Paracentrotus/genética , Proteoma/genética , Adesividade , Adesivos/química , Sequência de Aminoácidos , Substituição de Aminoácidos , Animais , Moléculas de Adesão Celular/metabolismo , Clonagem Molecular , DNA Complementar/genética , DNA Complementar/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Nectinas , Especificidade de Órgãos , Paracentrotus/química , Paracentrotus/metabolismo , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , Proteoma/metabolismo , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos
11.
Int J Biol Macromol ; 67: 132-9, 2014 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-24657377

RESUMO

Bacillus pumilus S124A was identified as carboxymethyl cellulase producing bacteria from Azorean Bacillus collection (Lab collection), which was isolated in local soils. The bacterium was identified by 16S rRNA sequence and designated as Bacillus pumilus S124A. NCBI-blast analysis showed B. pumilus S124A; 16S rRNA sequence has high identity to other B. pumilus strains. Phylogenetic analysis showed B. pumilus S124A close to B. pumilus LZBP14 strain. CMcellulase was purified from cells-free supernatants and post mano-Q purification; 5.39% protein folds, and 0.88% recoveries were obtained. SDS-PAGE analysis showed molecular weight of the purified CMcellulase was estimated ∼40kDa and composed of a single subunit. NonoLC ESI-MS/MS analysis was yielded four peptides, and protein has identity to other cellulases. Purified CMcellulase showed high activity to cellobiose followed by CMcellulose. Kinetic analysis showed Km, and Vmax were determined as 2.12mg/ml, 239µmol/min/mg, respectively. Optimum temperature and pH for the purified CMcellulase activity were found at 50°C and pH 6.0, respectively. Purified CMcellulase was maintained about 75% activity in a pH range of 4-8 and 70% activity in a temperature range of 40-70°C. CMcellulase activity was highly reduced by HgCl2, followed by EDTA, PMSF whereas CoCl2 was activated CMcellulase activity.


Assuntos
Bacillus/enzimologia , Celulase/química , Estabilidade Enzimática , RNA Ribossômico 16S/química , Celulase/genética , Celulase/isolamento & purificação , Concentração de Íons de Hidrogênio , Cinética , RNA Ribossômico 16S/genética , RNA Ribossômico 16S/isolamento & purificação , Especificidade por Substrato , Espectrometria de Massas em Tandem , Temperatura
12.
PLoS One ; 8(9): e75691, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-24098715

RESUMO

Steinernemacarpocapsae is a nematode pathogenic in a wide variety of insect species. The great pathogenicity of this nematode has been ascribed to its ability to overcome the host immune response; however, little is known about the mechanisms involved in this process. The analysis of an expressed sequence tags (EST) library in the nematode during the infective phase was performed and a highly abundant contig homologous to serine protease inhibitors was identified. In this work, we show that this contig is part of a 641-bp cDNA that encodes a BPTI-Kunitz family inhibitor (Sc-KU-4), which is up-regulated in the parasite during invasion and installation. Recombinant Sc-KU-4 protein was produced in Escherichia coli and shown to inhibit chymotrypsin and elastase activities in a dose-dependent manner by a competitive mechanism with Ki values of 1.8 nM and 2.6 nM, respectively. Sc-KU-4 also inhibited trypsin and thrombin activities to a lesser extent. Studies of the mode of action of Sc-KU-4 and its effects on insect defenses suggest that although Sc-KU-4 did not inhibit the activation of hemocytes or the formation of clotting fibers, it did inhibit hemocyte aggregation and the entrapment of foreign particles by fibers. Moreover, Sc-KU-4 avoided encapsulation and the deposition of clotting materials, which usually occurs in response to foreign particles. We show by protein-protein interaction that Sc-KU-4 targets recognition proteins of insect immune system such as masquerade-like and serine protease-like homologs. The interaction of Sc-KU-4 with these proteins explains the ability of the nematode to overcome host reactions and its large pathogenic spectrum, once these immune proteins are well conserved in insects. The discovery of this inhibitor targeting insect recognition proteins opens new avenues for the development of S. carpocapsae as a biological control agent and provides a new tool to study host-pathogen interactions.


Assuntos
Aprotinina/metabolismo , Etiquetas de Sequências Expressas/metabolismo , Evasão da Resposta Imune/fisiologia , Modelos Moleculares , Nematoides/patogenicidade , Conformação Proteica , Animais , Aprotinina/genética , Western Blotting , Mapeamento de Sequências Contíguas , Primers do DNA/genética , Escherichia coli , Evolução Molecular , Perfilação da Expressão Gênica , Evasão da Resposta Imune/genética , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
13.
PLoS One ; 8(7): e69161, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23874900

RESUMO

Steinernema carpocapsae is an entomopathogenic nematode widely used for the control of insect pests due to its virulence, which is mainly attributed to the ability the parasitic stage has to overcome insect defences. To identify the mechanisms underlying such a characteristic, we studied a novel serpin-like inhibitor (sc-srp-6) that was detected in a transcriptome analysis. Recombinant Sc-SRP-6 produced in Escherichia coli had a native fold of serpins belonging to the α-1-peptidase family and exhibited inhibitory activity against trypsin and α-chymotrypsin with Ki of 0.42 × 10(-7) M and 1.22 × 10(-7) M, respectively. Functional analysis revealed that Sc-SRP-6 inhibits insect digestive enzymes, thus preventing the hydrolysis of ingested particles. Moreover, Sc-SRP-6 impaired the formation of hard clots at the injury site, a major insect defence mechanism against invasive pathogens. Sc-SRP-6 does not prevent the formation of clot fibres and the activation of prophenoloxidases but impairs the incorporation of the melanin into the clot. Binding assays showed a complex formation between Sc-SRP-6 and three proteins in the hemolymph of lepidopteran required for clotting, apolipophorin, hexamerin and trypsin-like, although the catalytic inhibition occurred exclusively in trypsin-like. This data allowed the conclusion that Sc-SRP-6 promotes nematode virulence by inhibiting insect gut juices and by impairing immune clot reaction.


Assuntos
Proteínas de Helminto/metabolismo , Insetos/parasitologia , Rabditídios/metabolismo , Serpinas/metabolismo , Animais , Proteínas de Helminto/genética , Hemolinfa/efeitos dos fármacos , Hemolinfa/metabolismo , Proteínas de Insetos/metabolismo , Insetos/metabolismo , Rabditídios/patogenicidade , Serpinas/genética
14.
Parasitology ; 140(9): 1158-67, 2013 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-23731543

RESUMO

Many protease genes have previously been shown to be involved in parasitism and in the development of Steinernema carpocapsae, including a gene predicted to encode an aspartic protease, Sc-ASP110, which was cloned and was analysed in this study. A cDNA encoding Sc-ASP110 was cloned based on an expressed sequence tag (EST) fragment from our EST library. The full-length cDNA of Sc-ASP110 consists of 1112 nucleotides with a catalytic aspartic domain (aa18-337). The putative 341 amino acid residues have a calculated molecular mass of 37·1 kDa and a theoretical pI of 4·7. BLASTp analysis of the Sc-ASP110 amino acid sequence showed 45-77% amino acid sequence identity to parasitic and non-parasitic nematode aspartic proteases. An expression analysis showed that the sc-asp110 gene was upregulated during the late parasitic stage, L4, and 24 h after induction of in vitro nematodes. A sequence comparison revealed that Sc-ASP110 was a member of an aspartic protease family; additionally, a phylogenetic analysis indicated that Sc-ASP110 was clustered with the closely related nematode Steinernema feltiae. In situ hybridization showed that sc-asp110 was expressed in the body walls of dorsal cells. The upregulated Sc-ASP110 expression revealed that this protease could play a role in the late parasitic process. In this study, we have cloned and analysed the gene transcript of Sc-ASP110 in S. carpocapsae.


Assuntos
Ácido Aspártico Proteases/genética , Regulação da Expressão Gênica , Rabditídios/enzimologia , Sequência de Aminoácidos , Animais , Ácido Aspártico Proteases/metabolismo , Sequência de Bases , Clonagem Molecular , Biologia Computacional , DNA Complementar/química , DNA Complementar/genética , DNA de Helmintos/química , DNA de Helmintos/genética , Regulação da Expressão Gênica no Desenvolvimento , Modelos Moleculares , Dados de Sequência Molecular , Mariposas/parasitologia , Filogenia , RNA de Helmintos/genética , RNA de Helmintos/isolamento & purificação , RNA Mensageiro/genética , Rabditídios/genética , Rabditídios/crescimento & desenvolvimento , Alinhamento de Sequência , Análise de Sequência de DNA , Regulação para Cima
15.
PLoS One ; 7(5): e36371, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22567153

RESUMO

Ancient DNA (aDNA) analysis can be a useful tool in bacterial disease diagnosis in human remains. However, while the recovery of Mycobacterium spp. has been widely successful, several authors report unsuccessful results regarding ancient treponemal DNA, casting doubts on the usefulness of this technique for the diagnosis of ancient syphilis. Here, we present results from an analysis of four newborn specimens recovered from the crypt of "La Ermita de la Soledad" (XVI-XVII centuries), located in the province of Huelva in the southwest of Spain. We extracted and analyzed aDNA in three independent laboratories, following specific procedures generally practiced in the aDNA field, including cloning of the amplified DNA fragments and sequencing of several clones. This is the most ancient case, reported to date, from which detection of DNA from T. pallidum subspecies pallidum has been successful in more than one individual, and we put forward a hypothesis to explain this result, taking into account the course of the disease in neonate individuals.


Assuntos
Sífilis/genética , Arqueologia/métodos , DNA Mitocondrial/genética , Humanos , Recém-Nascido , Espanha
16.
Gene ; 500(2): 164-71, 2012 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-22503896

RESUMO

Steinernema carpocapsae is an insect parasitic nematode associated with the bacterium Xenorhabdus nematophila. These symbiotic complexes are virulent against the insect host. Many protease genes were shown previously to be induced during parasitism, including one predicted to encode an aspartic protease, which was cloned and analyzed in this study. A cDNA encoding Sc-ASP155 was cloned based on the EST fragment. The full-length cDNA of Sc-ASP155 consists of 955 nucleotides with multiple domains, including a signal peptide (aa1-15), a pro-peptide region (aa16-45), and a typical catalytic aspartic domain (aa71-230). The putative 230 amino acid residues have a calculated molecular mass of 23,812Da and a theoretical pI of 5.01. Sc-ASP155 blastp analysis showed 40-62% amino acid sequence identity to aspartic proteases from parasitic and free-living nematodes. Expression analysis showed that the sc-asp155 gene was up-regulated during the initial parasitic stage, especially in L3 gut and 6h induced nematodes. Sequence comparison revealed that Sc-ASP155 was a member of an aspartic protease family and phylogenetic analysis indicated that Sc-ASP155 was clustered with Sc-ASP113. In situ hybridization showed that sc-asp155 was expressed in subventral cells. Additionally, we determined that sc-asp155 is a single-copy gene in S. carpocapsae. Homology modeling showed that Sc-ASP155 adopts a typical aspartic protease structure. The up-regulated Sc-ASP155 expression revealed that this protease could play a role in the parasitic process. In this study, we have cloned the gene and determined the expression of the pepsin-like aspartic protease Sc-ASP155 in S. carpocapsae.


Assuntos
Ácido Aspártico Proteases/genética , Regulação da Expressão Gênica no Desenvolvimento/genética , Regulação Enzimológica da Expressão Gênica/genética , Mariposas/parasitologia , Rabditídios/enzimologia , Sequência de Aminoácidos , Animais , Ácido Aspártico Proteases/química , Ácido Aspártico Proteases/metabolismo , Sequência de Bases , Clonagem Molecular , Etiquetas de Sequências Expressas , Feminino , Proteínas de Helminto/química , Proteínas de Helminto/genética , Proteínas de Helminto/metabolismo , Interações Hospedeiro-Parasita , Modelos Moleculares , Dados de Sequência Molecular , Pepsina A/química , Pepsina A/genética , Pepsina A/metabolismo , Filogenia , Estrutura Terciária de Proteína , RNA de Helmintos/genética , Rabditídios/genética , Rabditídios/crescimento & desenvolvimento , Rabditídios/microbiologia , Análise de Sequência de DNA , Homologia de Sequência , Simbiose , Xenorhabdus/fisiologia
17.
Mol Biochem Parasitol ; 182(1-2): 37-44, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22178695

RESUMO

Steinernema carpocapsae is an insect parasitic nematode associated with the bacterium Xenorhabdus nematophila. During invasion, this nematode is able to express many proteases, including aspartic proteases. Genes encoding these aspartic proteases have been identified in the EST, and aspartic protease has been found in excretory-secretory products. The total protease was shown to digest blood hemoglobin in a zymogram gel. When the protein was partially purified by pepstatin affinity chromatography, it was observed to have high activity against both hemoglobin and the synthetic substrate Phe-Ala-Ala-Phe-(4NO(2))-Phe-Val-Leu (4-pyridylmethyl) ester. The protein was confirmed by mass spectrometry and was found to be encoded by the gene sc-asp113. A cDNA encoding aspartic protease was cloned based on the EST fragment, which was constructed in our lab. The full-length cDNA of Sc-ASP113 consists of 1257 nucleotides encoding a protein with multiple domains, including a signal peptide (aa 1-15), a propeptide region (aa 16-45), and a typical catalytic aspartic domain (aa 68-416). The cleavage site of the signal peptide is predicted to be between Ala15 and Ala16. The putative 418 amino acid residues have a calculated molecular mass of 44,742Da and a theoretical pI of 5.14. BLAST analysis showed 33-56% amino acid sequence identity to aspartic proteases from parasitic and free living nematodes. Expression analysis showed that the sc-asp113 gene was up-regulated during the initial parasitic stage, especially during L3 inside the gut. In vitro, we showed that treatment with insect homogenate for 6h is sufficient to induce the expression of this protease in treated infective juveniles. Sequence comparison and evolutionary analysis revealed that Sc-ASP113 is a member of the aspartic protease family with the potential for tissue degradation. Phylogenetic analysis indicates that Sc-ASP113 branched between Haemonchus contortus and Steinernema feltiae proteases. Homology modeling showed that Sc-ASP113 adopts a typical aspartic protease structure. The up-regulation of Sc-ASP113 expression indicates that this protease could play a role in the parasitic process. To facilitate the exploration of this protease as a virulence factor, here we describe the purification of the protease and its molecular characterization in S. carpocapsae.


Assuntos
Ácido Aspártico Proteases/isolamento & purificação , Proteínas de Helminto/isolamento & purificação , Nematoides/enzimologia , Nematoides/genética , Animais , Ácido Aspártico Proteases/genética , Ácido Aspártico Proteases/metabolismo , Domínio Catalítico , Cromatografia de Afinidade/métodos , Clonagem Molecular , DNA Complementar/genética , DNA Complementar/metabolismo , Etiquetas de Sequências Expressas , Feminino , Regulação da Expressão Gênica , Genes de Helmintos , Proteínas de Helminto/genética , Proteínas de Helminto/metabolismo , Hemoglobinas , Interações Hospedeiro-Parasita , Insetos/parasitologia , Masculino , Espectrometria de Massas , Nematoides/patogenicidade , Infecções por Nematoides/parasitologia , Filogenia , Sinais Direcionadores de Proteínas , Fatores de Tempo , Regulação para Cima
18.
Exp Parasitol ; 130(2): 116-25, 2012 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-22206770

RESUMO

Entomopathogenic nematode Heterorhabditis bacteriophora Az29 and Az36 isolates with different virulence against Popillia unipuncta and soil survival time were isolated from the Azorean archipelago (Portugal) and used for the study. RAPD analysis revealed a very low-level of genetic diversity (GD(axenic Az36 isolate)(axenic Az29 isolate)=0.2338±0.0541) between axenic Az29 and Az36 isolates, and a relative low-level of diversity (GD(Az36 isolate)(Az29 isolate)=0.3366±0.0471) between Az29 and Az36 isolates. To unravel the molecular differences, a suppressive subtractive hybridization library was constructed from the parasitic stage. Assembling 150 high quality ESTs produced 70 singletons and 17 contigs. BLAST analysis revealed that 48 ESTs showed significant similarity to known protein and 39 ESTs had no significant hits in the database, perhaps representing novel genes. Functional annotation revealed some of these genes to be involved in metabolism, cellular process and signaling, information storage and processing, stress response and host-parasite interactions. Genes with a role in the parasitism process were identified including lectin, metalloprotease, enolase, chitinase, surface-associated antigen, and as well as genes (aquaporin, Hsp70A, Hsp10 and Hsp20) essential for stresses tolerance. The work described here provides the molecular data necessary for investigating the fundamental molecular aspects of host-parasite interactions. Future investigations should be focused on determining the molecular mechanism of those genes in entomopathogenic nematode life cycle.


Assuntos
Besouros/parasitologia , Expressão Gênica , Variação Genética , Rhabditoidea/genética , Sequência de Aminoácidos , Animais , Antígenos de Helmintos/química , Antígenos de Helmintos/genética , Antígenos de Superfície/química , Antígenos de Superfície/genética , Bactérias/crescimento & desenvolvimento , Etiquetas de Sequências Expressas , Biblioteca Gênica , Interações Hospedeiro-Parasita/genética , Metaloproteases/química , Metaloproteases/genética , Dados de Sequência Molecular , Controle Biológico de Vetores , Técnica de Amplificação ao Acaso de DNA Polimórfico , Rhabditoidea/patogenicidade , Alinhamento de Sequência , Solo/parasitologia , Simbiose , Virulência
19.
Rapid Commun Mass Spectrom ; 25(14): 1972-80, 2011 Jul 30.
Artigo em Inglês | MEDLINE | ID: mdl-21698680

RESUMO

High-performance liquid chromatography-diode array detection-electrospray ionization multi-stage mass spectrometry (HPLC-DAD-ESI-MS(n)) is considered to be a very valuable tool for the characterization of compounds found in trace amounts in natural matrices, as their previous isolation and clean-up steps can be avoided. Micro-scale separation increases the potential of this analytical technique, allowing the determination of compounds in reduced samples. Spodoptera littoralis represents a major challenge to Solanaceae plants, as it is one of the most deleterious pests. The S. littoralis/Lycopersicon esculentum system was studied for the first time concerning glycoalkaloids and phenolics. Using HPLC-DAD-ESI-MS(n) we were able to characterize 15 phenolic compounds in L. esculentum leaves. Nine of them are reported for the first time. Some differences were found between leaves of cerasiforme and 'Bull's heart' varieties. However, in the materials of S. littoralis (larvae, adults, exuviae and excrements) reared in both L. esculentum leaves no phenolics were identified. α-Tomatine was the main glycoalkaloid in the host plant. The glycoalkaloid composition of the different S. littoralis materials was distinct, with α-tomatine and dehydrotomatine being the main detected compounds in larvae and excrements. These results add knowledge to the ecological interaction in this insect/plant duo, for which it is hard to obtain considerable sample amounts.


Assuntos
Alcaloides/isolamento & purificação , Fenóis/isolamento & purificação , Solanum lycopersicum/química , Espectrometria de Massas por Ionização por Electrospray/métodos , Spodoptera/química , Alcaloides/química , Alcaloides/classificação , Animais , Cromatografia Líquida de Alta Pressão/métodos , Interações Hospedeiro-Parasita , Fenóis/química , Fenóis/classificação
20.
J Biol Chem ; 285(40): 30666-75, 2010 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-20656686

RESUMO

Steinernema carpocapsae is an insect parasitic nematode used in biological control, which infects insects penetrating by mouth and anus and invading the hemocoelium through the midgut wall. Invasion has been described as a key factor in nematode virulence and suggested to be mediated by proteases. A serine protease cDNA from the parasitic stage was sequenced (sc-sp-1); the recombinant protein was produced in an Escherichia coli system, and a native protein was purified from the secreted products. Both proteins were confirmed by mass spectrometry to be encoded by the sc-sp-1 gene. Sc-SP-1 has a pI of 8.7, a molecular mass of 27.3 kDa, a catalytic efficiency of 22.2 × 10(4) s(-1) m(-1) against N-succinyl-Ala-Ala-Pro-Phe-pNA, and is inhibited by chymostatin (IC 0.07) and PMSF (IC 0.73). Sc-SP-1 belongs to the chymotrypsin family, based on sequence and biochemical analysis. Only the nematode parasitic stage expressed sc-sp-1. These nematodes in the midgut lumen, prepared to invade the insect hemocoelium, expressed higher levels than those already in the hemocoelium. Moreover, parasitic nematode sense insect peritrophic membrane and hemolymph more quickly than they do other tissues, which initiates sc-sp-1 expression. Ex vivo, Sc-SP-1 was able to bind to insect midgut epithelium and to cause cell detachment from basal lamina. In vitro, Sc-SP-1 formed holes in an artificial membrane model (Matrigel), whereas Sc-SP-1 treated with PMSF did not, very likely because it hydrolyzes matrix glycoproteins. These findings highlight the S. carpocapsae-invasive process that is a key step in the parasitism thus opening new perspectives for improving nematode virulence to use in biological control.


Assuntos
Proteínas de Helminto/química , Insetos/parasitologia , Nematoides/enzimologia , Serina Proteases/química , Sequência de Aminoácidos , Animais , Proteínas de Helminto/genética , Proteínas de Helminto/metabolismo , Hemolinfa/parasitologia , Dados de Sequência Molecular , Nematoides/genética , Nematoides/patogenicidade , Oligopeptídeos/química , Controle Biológico de Vetores/métodos , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Serina Proteases/genética , Serina Proteases/metabolismo
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