Assessment of the Biological Impact of SARS-CoV-2 Genetic Variation Using an Authentic Virus Neutralisation Assay with Convalescent Plasma, Vaccinee Sera, and Standard Reagents.

In the summer of 2020, it became clear that the genetic composition of SARS-CoV-2 was changing rapidly. This was highlighted by the rapid emergence of the D614G mutation at that time. In the autumn of 2020, the project entitled "Agility" was initiated with funding from the Coalition for Epidemic Preparedness Innovations (CEPI) to assess new variants of SARS-CoV-2. The project was designed to reach out and intercept swabs containing live variant viruses in order to generate highly characterised master and working stocks, and to assess the biological consequences of the rapid genetic changes using both in vitro and in vivo approaches. Since November 2020, a total of 21 variants have been acquired and tested against either a panel of convalescent sera from early in the pandemic, and/or a panel of plasma from triple-vaccinated participants. A pattern of continuous evolution of SARS-CoV-2 has been revealed. Sequential characterisation of the most globally significant variants available to us, generated in real-time, indicated that the most recent Omicron variants appear to have evolved in a manner that avoids immunological recognition by convalescent plasma from the era of the ancestral virus when analysed in an authentic virus neutralisation assay.

Effect of a cognitive challenge device containing food and non-food rewards on chimpanzee well-being.

Exploration and problem-solving are highly motivated behaviors in non-human primates, but little research has focused on whether cognitively challenging tasks can enhance primates' psychological well-being, particularly in the absence of food rewards. We evaluated whether a novel cognitive challenge device (CCD) consisting of a maze of opaque tubes enhanced the well-being of a group of six adult chimpanzees housed at ZSL Whipsnade Zoo, UK, over a two-month period. Chimpanzees had the opportunity to interact with two versions of the CCD: the first contained tokens which fell into a transparent chamber when extracted from the CCD and could not be eaten. The second contained unshelled Brazil nuts, which could be extracted and eaten. CCD-use was low over the study, occupying on average 2.5% of observation time. However, compared to baseline levels, chimpanzees exhibited more problem-solving behaviors (directed toward the CCD) and spent significantly more time engaged in social play when the CCD was present. Cage exploration was rare whether the CCD was present or not. Chimpanzees used the CCD (including tool-use) significantly more when it contained tokens. The relationship between the presence of the CCD and self-directed behavior (rough-scratching) was difficult to interpret. Although rough-scratching was significantly higher in the cage when the CCD was present and 18% of these scratching events occurred within one arm's length from the CCD, rough-scratching decreased when device use increased. This study provides a preliminary investigation of the CCD and two reward types, and suggests how the design could be modified to enhance its effects.