Genome analysis of a coral-associated bacterial consortium highlights complementary hydrocarbon degradation ability and other beneficial mechanisms for the host.

Here we report the oil degradation genetic potential of six oil-degrading bacteria (ODB), previously used as a bioremediation consortium, isolated from the hydrocoral Millepora alcicornis and seawater. The strains were identified as Halomonas sp. (LC_1), Cobetia sp. (LC_6), Pseudoalteromonas shioyasakiensis (LC_2), Halopseudomonas aestusnigri (LC_3), Shewanella algae (LC_4), and Brucella intermedia (LC_5). The taxonomic identification differed from that of the original paper when we used whole genome gene markers instead of just 16S rRNA gene. Genes responsible for the degradation of aromatic hydrocarbons and n-alkanes were found in all genomes, although different (and complementary) steps of the metabolic pathways were unique to each strain. Genes for naphthalene and toluene degradation were found in various strains. We annotated quinate degradation genes in LC_6, while LC_3 and LC_5 presented genes for biosurfactant and rhamnolipid biosynthesis. We also annotated genes related to beneficial mechanisms for corals, such as genes involved in nitrogen and DMSP metabolism, cobalamin biosynthesis and antimicrobial compounds production. Our findings reinforce the importance of using bacterial consortia for bioremediation approaches instead of single strains, due to their complementary genomic arsenals. We also propose a genome-based framework to select complementary ODB that can provide additional benefits to coral health.

Dynamics of hydrocarbon mineralization characterized by isotopic analysis at a jet-fuel-contaminated site in subtropical climate.

Release of benzene, toluene, ethylbenzene, and xylene (BTEX) as components of the light non-aqueous phase liquids (LNAPL) contaminates soil and groundwater. Assessing the mechanisms of degradation and mineralization of BTEX in groundwater helps understand the migration of the dissolved plume, enabling the reduction of risks to humans. Here, we studied the fate of ethylbezene, m,p-xylenes and o-xylenes and the accompanying formation of methane in a Cenozoic lateritic aquifer in Brazil by compound-specific carbon stable isotope analysis (CSIA), to gain insights into the complex dynamics of release and biodegradation of BTEX in the LNAPL source zone. The enrichment of ∂13C in aromatic compounds dissolved in groundwater compared to the corresponding compounds in LNAPL indicate that CSIA can provide valuable information regarding biodegradation. The isotopic analysis of methane provides direct indication of oxidation mediated by aquifer oxygenation. The ∂13C-CO2 values indicate methanogenesis prevailing at the border and aerobic biodegradation in the center of the LNAPL source zone. Importantly, the isotopic results allowed major improvements in the previously developed conceptual model, supporting the existence of oxic and anoxic environments within the LNAPL source zone.

Biodegradation of stored jet fuel by a Nocardia sp. isolated from contaminated soil

The aim of this study was to investigate the potential of degradation of an autochthonous bacterial strain, isolated from petroleum derivatives contaminated soil samples against jet fuel hydrocarbons. The autochthonous bacterial strain was characterized as Nocardia sp. Evaluation of their degrading abilities was carried out by presumptive assays as redox indicator test and by observations of surface tension decreases in aqueous medium. Degradation of jet fuel hydrocarbons was evaluated by chromatographic methods. Experiments were performed in flasks at two biostimulation rates. A bacterial strain of Pseudomonas aeruginosa UFPEDA 39 was utilized as a reference microorganism. The bacterial strain, identified as Nocardia sp, demonstrate high ability to degrade jet fuel compounds as well as to produce surface active compounds when compared to the reference microrganism.

O presente estudo objetivou a investigação da capacidade degradadora de uma linhagem bacteriana autóctone (isolada de amostras de solo contaminadas com derivados de petróleo) contra hidrocarbonetos de querosene de aviação. A linhagem foi caracterizada como Nocardia sp. A avaliação do seu potencial degradador deu-se realizada mediante testes com indicador redox e observações na redução da tensão superficial na fase aquosa. A degradação do querosene foi avaliada por métodos cromatográficos. Os experimentos foram realizados utilizando-se duas taxas de bioestímulo. Uma linhagem bacteriana Pseudomonas aeruginosa UFPEDA 39 foi utilizada como referência. A linhagem autóctone demonstrou alta eficiência na degradação de hidrocarbonetos do querosene bem como para produzir compostos ativos de superfície quando comparada com a linhagem de referência.