Using electronic coherence to probe a deeply embedded quantum well in bimetallic Pb/Ag films on Si(111).

We report an experiment in which we utilize electronic coherence to probe a deeply embedded thin film as a quantum well. An atomically uniform Ag film prepared on Si(111) was covered by Pb films up to 70 A thick, and the resulting electronic structure was examined by angle-resolved photoemission spectroscopy. Despite a photoemission escape depth of just a few Angströms and an incommensurate Pb/Ag interface, the data reveal a striking Fabry-Pérot-like structure characteristic of an Ag etalon buried deeply under the Pb overlayers. Our simulations clearly illustrate the manifest coherence of the electronic structures, permitting the characterization of the embedded Ag quantum well.

Coherent electronic fringe structure in incommensurate silver-silicon quantum wells.

Atomically uniform silver films grown on highly doped n-type Si(111) substrates show fine-structured electronic fringes near the silicon valence band edge as observed by angle-resolved photoemission. No such fringes are observed for silver films grown on lightly doped n-type substrates or p-type substrates, although all cases exhibited the usual quantum-well states corresponding to electron confinement in the film. The fringes correspond to electronic states extending over the silver film as a quantum well and reaching into the silicon substrate as a quantum slope, with the two parts coherently coupled through an incommensurate interface structure.

JCell--a Java-based framework for inferring regulatory networks from time series data.

MOTIVATION: JCell is a Java-based application for reconstructing gene regulatory networks from experimental data. The framework provides several algorithms to identify genetic and metabolic dependencies based on experimental data conjoint with mathematical models to describe and simulate regulatory systems. Owing to the modular structure, researchers can easily implement new methods. JCell is a pure Java application with additional scripting capabilities and thus widely usable, e.g. on parallel or cluster computers. AVAILABILITY: The software is freely available for download at http://www-ra.informatik.uni-tuebingen.de/software/JCell.

[Cloning and analysis of a new neurogene in the mouse]. / Klonirovanie i analiz novogo neirogena myshi.

The previously described gene sip1 belongs to transcription factors of the zinc finger family. It has been ascertained recently that this gene is involved in TGF signaling cascade. Mutations in human gene sip1 cause Hirschprung syndrome. The expression of gene sip1 during embryonic mouse development was studied by in situ hybridization and immunostaining. Starting at E12.5, sip1 transcripts are present in a number of tissues: in the cortical plate, ventricular zone of the basal ganglion, thalamus, pons and midbrain, in specific nuclei of the brain stem and in the dorsal part of the spinal cord. In the developing cerebral cortex, sip1 expression is region-specific. In the brain of adult mice, sip1 expression is mostly detected in hippocampus, dentate gyrus, and white matter of the neocortex. Sip1 protein expression in the cerebral cortex is mostly confined to glutamatergic neurons.

Gene expression patterns of epithelial cells modulated by pathogenicity factors of Yersinia enterocolitica.

Epithelial cells express genes whose products signal the presence of pathogenic microorganisms to the immune system. Pathogenicity factors of enteric bacteria modulate host cell gene expression. Using microarray technology we have profiled epithelial cell gene expression upon interaction with Yersinia enterocolitica. Yersinia enterocolitica wild-type and isogenic mutant strains were used to identify host genes modulated by invasin protein (Inv), which is involved in enteroinvasion, and Yersinia outer protein P (YopP) which inhibits innate immune responses. Among 22 283 probesets (14,239 unique genes), we found 193 probesets (165 genes) to be regulated by Yersinia infection. The majority of these genes were induced by Inv, whose recognition leads to expression of NF-kappa B-regulated factors such as cytokines and adhesion molecules. Yersinia virulence plasmid (pYV)-encoded factors counter regulated Inv-induced gene expression. Thus, YopP repressed Inv-induced NF-kappa B regulated genes at 2 h post infection whereas other pYV-encoded factors repressed host cell genes at 4 and 8 h post infection. Chromosomally encoded factors of Yersinia, other than Inv, induced expression of genes known to be induced by TGF-beta receptor signalling. These genes were also repressed by pYV-encoded factors. Only a few host genes were exclusively induced by pYV-encoded factors. We hypothesize that some of these genes may contribute to pYV-mediated silencing of host cells. In conclusion, the data demonstrates that epithelial cells express a limited number of genes upon interaction with enteric Yersinia. Both Inv and YopP appear to modulate gene expression in order to subvert epithelial cell functions involved in innate immunity.

Efficiency of converting nutrient dry matter to milk in Holstein herds.

Production of milk from feed dry matter intakes (DMI), called dairy or feed efficiency, is not commonly measured in dairy herds as is feed conversion to weight gain in swine, beef, and poultry; however, it has relevance to conversion of purchased input to salable product and proportion of dietary nutrients excreted. The purpose of this study was to identify some readily measured factors that affect dairy efficiency. Data were collected from 13 dairy herds visited 34 times over a 14-mo period. Variables measured included cool or warm season (high ambient temperature <21 degrees C or >21 degrees C, respectively), days in milk, DMI, milk yield, milk fat percent, herd size, dietary concentrations (DM basis) and kilograms of crude protein (CP), acid detergent fiber (ADF), neutral detergent fiber (NDF), and forage. Season, days in milk, CP % and forage % of diet DM, and kilograms of dietary CP affected dairy efficiency. When evaluated using a model containing the significant variables, dairy efficiency was lower in the warm season (1.31) than in the cool season (1.40). In terms of simple correlations, dairy efficiency was negatively correlated with days in milk (r = -0.529), DMI (r = -0.316), forage % (r = -0.430), NDF % (r = -0.308), and kilograms of forage (r = -0.516), NDF (r = -0.434), and ADF (r = -0.313), in the diet, respectively. Dairy efficiency was positively correlated with milk yield (r = 0.707). The same relative patterns of significance and correlation were noted for dairy efficiency calculated with 3.5% fat-corrected milk yield. Diets fed by the herds fell within such a small range of variation (mean +/- standard deviation) for CP % (16.3 +/- 0.696), NDF % (33.2 +/- 2.68), and forage % (46.9 +/- 5.56) that these would not be expected to be useful to evaluate the effect of excessive underfeeding or overfeeding of these dietary components. The negative relationships of dairy efficiency with increasing dietary fiber and forage may reflect the effect of decreased diet digestibility. The results of this study suggest that managing herd breeding programs to reduce average days in milk and providing a cooler environment for the cows may help to maximize dairy efficiency. The mechanisms for the effects of the dietary variables on dairy efficiency need to be understood and evaluated over a broader range of diets and conditions before more firm conclusions regarding their impact can be drawn.

Is the dissociability of working memory systems for name identity, visual-object identity, and spatial location maintained in old age?

The dissociability of working memory for name identity (verbal information), visual objects, and spatial location was explored in 3 experiments. Consistent with previous results, the 3 working memory systems were dissociable in younger adults. Both younger and older adults showed involvement of name identity in an object identity task, and older adults showed this involvement in a spatial memory task. Results were interpreted as showing that the systems are generally separable but that involvement of 1 with another is possible and more likely in older adults. A 4th, correlational study showed that there is generalized decline in working memory systems in old age, with the age differences in memory mediated to a moderate extent by age-related differences in speed of processing. It was speculated that the specific, possibly strategic changes are independent of and take place against a backdrop of generalized loss of nervous system integrity.

Locating and fractionating working memory using functional neuroimaging: storage, maintenance, and executive functions.

Working memory encompasses the short-term store of information and operations on that information. We review functional neuroimaging studies that have attempted to determine cortical areas involved in working memory functions. Current research suggests distinct systems for verbal information, visual objects, and spatial locations. Passive storage buffers appear to be located in posterior brain areas, whereas active maintenance of the information involves ventrolateral prefrontal areas. More complex, executive operations appear to recruit dorsolateral prefrontal cortex and anterior cingulate cortex. The possible involvement of reciprocal circuits including frontal cortex, basal ganglia, and thalamus is also discussed.

Injection of beef strip loins with solutions containing sodium tripolyphosphate, sodium lactate, and sodium chloride to enhance palatability.

Beef strip loins (46 U.S. Choice loins and 49 U.S. Select loins) were used to evaluate the potential for enhancing beef tenderness, juiciness, and flavor by injecting fresh cuts with solutions containing sodium tripolyphosphate, sodium lactate, and sodium chloride. One half of each loin served as an untreated control, and the other half was injected with either distilled water (110% of raw weight) or a solution containing phosphate/lactate/chloride solution (107.5, 110, 112.5, or 115% of raw weight). All phosphate/lactate/chloride solutions were formulated to produce injected product concentrations of .25% sodium tripolyphosphate, .5% sodium chloride, and 2.5% sodium lactate. Ten additional U.S. Select loins were injected to 110% of raw weight with a phosphate-only solution (final product concentration of .25% sodium tripolyphosphate) for comparison with Select loins injected to 110% with phosphate/lactate/chloride and with distilled water. Steaks from each control and treated loin section were cooked to two final internal temperatures (66 degrees C and 77 degrees C) for sensory panel evaluation and shear force measurement. Injection of subprimal cuts with phosphate/lactate/chloride solutions improved tenderness (P < .05), juiciness (P < .05), and cooked beef flavor (P < .10) of strip loin steaks and was especially effective for maintaining tenderness and juiciness of steaks cooked to the higher final internal temperature. Injection of Select loins with a solution containing only sodium tripolyphosphate was not effective for improving beef tenderness or juiciness and tended to impart off-flavors characterized by sensory panelists as soapy and sour. Injection of fresh cuts with phosphate/lactate/chloride solutions could assist the beef industry's efforts to improve product quality and consistency.

Factors contributing to dystocia due to fetal malpresentation in beef cattle.

Records on 3873 calvings over a 21-year period (1971 to 1991) from the Colorado State University Resident Instruction beef cattle herd were used to examine factors associated with malpresentations at birth. Approximately 82% of the calvings were unassisted and 18% were assisted in some manner. Of the assisted deliveries, severe traction, mild traction, malpresentation and caesarean section accounted for 44.5, 31.8, 22.4 and 1.3%, respectively, of the total. Ninety-six percent of all births were normal presentations and 4% were malpresentations. The incidence of malpresentations was affected by year, sex of calf, and sire of calf within breed. Most of the malpresentations were in the posterior dorsal position (72.8%) followed by unilateral carpal or shoulder flexion (11.4%), breech (8.2%), lateral deviation of the head (2.5%), incomplete extension of the elbow (1.9%), posterior ventral (1.3%), transverse (1.3%) and oblique ventro-vertical (0.6%). Factors influencing the incidence of posterior dorsal presentations were year, sex of calf, sire of calf within breed, and age of dam. Malpresentation heritability estimates as traits of the calf were 0.088 and 0.003 for Hereford and Angus breeds, respectively. Posterior presentation heritability estimates for Hereford and Angus cattle were 0.173 and 0.0, respectively. Heritabilities as traits of the dam and repeatabilities for malpresentation, and posterior presentation were minimal.