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Environ Sci Technol ; 38(22): 6109-17, 2004 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-15573614

RESUMO

Microbial source tracking (MST) uses various approaches to classify fecal-indicator microorganisms to source hosts. Reproducibility, accuracy, and robustness of seven phenotypic and genotypic MST protocols were evaluated by use of Escherichia coli from an eight-host library of known-source isolates and a separate, blinded challenge library. In reproducibility tests, measuring each protocol's ability to reclassify blinded replicates, only one (pulsed-field gel electrophoresis; PFGE) correctly classified all test replicates to host species; three protocols classified 48-62% correctly, and the remaining three classified fewer than 25% correctly. In accuracy tests, measuring each protocol's ability to correctly classify new isolates, ribotyping with EcoRI and PvuII approached 100% correctclassification but only 6% of isolates were classified; four of the other six protocols (antibiotic resistance analysis, PFGE, and two repetitive-element PCR protocols) achieved better than random accuracy rates when 30-100% of challenge isolates were classified. In robustness tests, measuring each protocol's ability to recognize isolates from nonlibrary


Assuntos
Escherichia coli/classificação , Fezes/microbiologia , Microbiologia da Água , Animais , Escherichia coli/isolamento & purificação , Reações Falso-Positivas , Biblioteca Gênica , Genótipo , Humanos , Fenótipo , Reprodutibilidade dos Testes , Ribotipagem , Sensibilidade e Especificidade
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