Study on the deformation law of the construction of the cutoff wall of the reservoir.

Relying on the middle line of south-to-north water diversion project ning storage reservoir has built the construction load impact assessment project, the study through the analysis of field conditions select reasonable monitoring section and monitoring scheme, the late monitoring, the results can reflect the overall deformation of the wall and stress, and use in advance in the wall, monitoring instruments, to the typical section of field deformation, pressure, strain and stress, automatic oblique monitoring results to introduce the stress strain of the whole wall. Research results: The soil pressure showed the larger on the outside and the slightly smaller on the inside; Concrete strain relative to the initial state in the direction of vertical wall and vertical strain increment is larger, The strain increment along the wall direction is small; The data of the reinforcement stress gauge are all negative, And the quantity value of the inner steel bar gauge continues to increase, The monitoring value of the outer steel bar gauge has a tendency to decrease gradually; Small displacement of the plastic concrete walls, Large displacement of reinforced concrete walls, And the value along the wall for the small law; The inclination displacement value of monitoring section 2-2 and 3-3 gradually decreases with the continuous construction, The displacement value of monitoring 1-1 section also becomes smaller in the first and middle stages of construction, But in the late construction, This shows that the horizontal displacement of the monitoring 1-1 section in the later construction period has a recovery trend; The top settlement value is larger at the 1st-3rd wall, About 6 mm-10mm, The 4-6 pin is smaller, About 4 mm-5mm, Article 7-10, the pin is directly crushed by the vehicle, Its value is approximately 6 mm-8mm.

Backcrossing to different parents produced two distinct hybrid species.

Repeated homoploid hybrid speciation (HHS) events with the same parental species have rarely been reported. In this study, we used population transcriptome data to test paraphyly and HHS events in the conifer Picea brachytyla. Our analyses revealed non-sister relationships for two lineages of P. brachytyla, with the southern lineage being placed within the re-circumscribed P. likiangensis species complex (PLSC) and P. brachytyla sensu stricto (s.s.) consisted solely of the northern lineage, forming a distinct clade that is paratactic to both the PLSC and P. wilsonii. Our phylogenetic and coalescent analyses suggested that P. brachytyla s.s. arose from HHS between the ancestor of the PLSC before its diversification and P. wilsonii through an intermediate hybrid lineage at an early stage and backcrossing to the ancestral PLSC. Additionally, P. purpurea shares the same parents and an extinct lineage with P. brachytyla s.s. but backcrossing to the other parent, P. wilsonii at a later stage. We reveal the first case that backcrossing to different parents of the same extinct hybrid lineage produced two different hybrid species. Our results highlight the existence of more reticulate evolution during species diversification in the spruce genus and more complex homoploid hybrid events than previously identified.

Experimental Study on Silt Soil Improved by Microbial Solidification with the Use of Lignin.

At present, in the field of geotechnical engineering and agricultural production, with increasingly serious pollution an environmentally friendly and efficient means is urgently needed to improve the soil mass. This paper mainly studied the microbial induced calcium carbonate precipitation (MICP) technology and the combined effect of MICP technology and lignin on the improvement of silt in the Beijing area. Through unconfined compressive strength and dynamic triaxial test methods, samples improved by microorganisms were studied to obtain the optimal values of cement concentration and lignin under these two test schemes. The results show that after the incubation time of Sporosarcina pasteurii reached 24 h, the OD600 value was 1.7-2.0 and the activity value (U) was 930-1000 mM ms/min. In the unconfined static pressure strength test, after MICP treatment the optimal concentration of cementitious solution for constant temperature and humidity samples and constant-temperature immersion samples was 1.25 mol/L. The compressive strength of the constant temperature and humidity sample was 1.73 MPa, and the compressive strength of the constant-temperature immersion sample was 3.62 Mpa. At the concentration of 1.25 mol/L of cement solution, MICP technology combined with lignin could improve the constant temperature and humidity silt sample. The optimal addition ratio of lignin was 4%, and its compressive strength was 1.9 MPa. The optimal lignin addition ratio of the sample soaked at a constant temperature was 3%, and the compressive strength was 4.84 MPa. In the dynamic triaxial multi-stage cyclic load test, the optimal concentration of cementation solution for the constant temperature and humidity sample after MICP treatment was 1.0 mol/L, and the failure was mainly inclined cracks. However, in the condition of joint improvement of MICP and lignin, the sample mainly had a drum-shaped deformation, the optimal lignin addition ratio was 4%, and the maximum axial load that the sample could bear was 306.08 N. When the axial dynamic load reached 300 N, the strain accumulation of the 4% group was only 2.3 mm. In this paper, lignin, an ecofriendly material, was introduced on the basis of MICP technology. According to the failure shape and relevant results of the sample, the addition of lignin was beneficial for the improvement of the compressive strength of the sample.

Experimental Study on Different Improvement Schemes of EICP-Lignin Solidified Silt.

In practical engineering applications, silt is prone to liquefaction and quicksand. This paper mainly studies the improvement effects of urease, lignin and their mixture on the strength and liquefaction resistance of silt. Based on the results and phenomena of an unconfined compressive strength and dynamic triaxial test, the improvement effects of the compressive strength, deformation resistance and liquefaction resistance of silt under different improvement schemes are analyzed, and the optimal values of the cement or lignin when enzyme-induced calcium carbonate precipitation (EICP) technology, lignin alone or EICP and lignin are obtained. The results show that the optimum concentration of the constant temperature and humidity sample (referred to as the constant humidity sample) and the constant temperature immersion sample (referred to as the soaking sample) of urease in the unconfined compressive strength test is 1.0 mol/L, and the compressive strength of the soaking sample is 4.9 MPa, which is 1.56 times that of the constant humidity sample; the optimum addition ratio of the lignin-improved constant humidity sample is 3%, and its compressive strength is 2.07 Mpa; the optimum addition ratio of the samples immersed at constant temperature is 4%, and the compressive strength is 3.05 MPa; when urease combines with lignin to improve silt, 4% is the best lignin addition ratio, the compressive strength of the constant humidity sample reaches 1.57 Mpa and the compressive strength of the soaking sample reaches 3.75 MPa; in the dynamic triaxial multi-stage cyclic load test, all samples were cured at constant humidity sample, and in the urease modified silt scheme, 1.0 mol/L was the optimal cement concentration; in the scheme of improving silt with lignin, 3% is the optimal addition ratio; when 1.25 mol/L cementation solution plus urease crude extract is combined with different ratios of lignin in the experimental scheme, 3% is the best lignin addition ratio.

Ca2+-Facilitated Adhesion of Bacteria on the Na-Montmorillonite Surface.

The adhesion of bacteria on clay surfaces strongly affected their migration and distribution in soil and water. Bacterial adhesion experiments on the Na-montmorillonite (Na-MMT) surface were conducted to determine the role of Na-MMT in the bacterial adhesion process and to prove the validity of the isotherm and kinetic theory for the bacterial surface adhesion in the presence of Ca2+ ions. Batch adhesion experiments with bacteria on the Na-MMT surface were carried out with varying time frames, temperatures, bacterial concentrations, and Ca2+ ion concentrations. The adhesion capacity of Na-MMT significantly correlated with the Ca2+ ion concentration, temperature, time frame, and bacterial concentration when Ca2+ ions were present. The adhesion morphology of the bacteria onto the Na-MMT surface, observed through the zeta-potential and atomic force microscopy (AFM), additionally demonstrated that the bacterial adhesion onto the Na-MMT surface was dominated by the nonelectrostatic force.

Experimental Study on the Influence of Different Factors on the Mechanical Properties of a Soil-Rock Mixture Solidified by Micro-Organisms.

In this paper, we focus on the application of mechanical properties in a soil-rock mixture modified by microbial mineralization under the influence of different factors, including pH value, cementing solution concentration, and cementing time. Cementing fluids and samples with different pH values, calcium ion concentrations, and mineralization cementation were prepared. The process of urea hydrolysis MICP under different factors was studied. A solidified soil-rock mixture sample under triaxial compression was measured. Then, combined with scanning test methods, such as SEM and XRD, the influence of different factors on the mechanical strength and failure mode of the soil-rock mixture structure was analyzed from a microscopic point of view. The results show that a low concentration of cementing solution with a high concentration of bacteria liquid generated the highest calcium carbonate content and the strongest cementing ability. When the pH value of the cementation solution is six, the cementation effect between the pores is the best, and the deviatoric stress is stronger. When wet-curing samples, short or long curing time will adversely affect the strength of soil-rock mixture samples, the strongest curing and cementing ability is 5 days. The microscopic results show that the microbial mineralization technology fills the pores between the particles, and the interaction force between particles is enhanced to enhance the strength of the soil-rock mixture.

Study on Ultrasonic Nondestructive Testing of Self-Compacting Concrete under Uniaxial Compression Test.

To study the variation law of ultrasonic parameters of self-compacting concrete before and after damage under uniaxial compression test conditions, the C30 self-compacting concrete blocks stored for 7 days and 28 days were subjected to ultrasonic nondestructive testing, and the variation law of the sound time, amplitude, and sound velocity before and after the damage of self-compacting concrete blocks was emphatically analyzed. The concrete acoustic detection software was introduced to judge and analyze the abnormal values of the parameters of each measuring point, and the defect distribution map of each test block was obtained. The results showed that after curing the self-compacting concrete test block for 7 days and 28 days, the average value of sound time before and after the failure of each measuring point of the test block is small, and the average value of sound time before the failure is less than that after; the average amplitude after failure is smaller than that before failure, and the amplitude of some measuring points will be smaller than that before. The average sound velocity after failure is less than that before failure, and the internal defects appear and the structure is not dense. This study provides a theoretical basis for the application of ultrasonic detection technology in the field of self-compacting concrete and also provides a practical basis for the stability monitoring and failure warning of self-compacting concrete.

Species delimitation and hybridization history of a hazel species complex.

BACKGROUND AND AIMS: Hybridization increases species adaptation and biodiversity but also obscures species boundaries. In this study, species delimitation and hybridization history were examined within one Chinese hazel species complex (Corylus chinensis-Corylus fargesii). Two species including four varieties have already been described for this complex, with overlapping distributions. METHODS: A total of 322 trees from 44 populations of these four varieties across their ranges were sampled for morphological and molecular analyses. Climatic datasets based on 108 geographical locations were used to evaluate their niche differentiations. Flowering phenology was also observed for two co-occurring species or varieties. KEY RESULTS: Four statistically different phenotypic clusters were revealed, but these clusters were highly inconsistent with the traditional taxonomic groups. All the clusters showed statistically distinct niches, with complete or partial geographical isolation. Only two clusters displayed a distributional overlap, but they had distinct flowering phenologies at the site where they co-occurred. Population-level evidence based on the genotypes of ten simple sequence repeat loci supported four phenotypic clusters. In addition, one cluster was shown to have an admixed genetic composition derived from the other three clusters through repeated historical hybridizations. CONCLUSIONS: Based on our new evidence, it is better to treat the four clusters identified here as four independent species. One of them was shown to have an admixed genetic composition derived from the other three through repeated historical hybridizations. This study highlights the importance of applying integrative and statistical methods to infer species delimitations and hybridization history. Such a protocol should be adopted widely for future taxonomic studies.

Rhamnella intermedia (Rhamnaceae), a new evergreen species from southwest Guangxi.

Rhamnella intermedia, a new evergreen species from southwest Guangxi, is described and illustrated in this study. This species is similar to R. brachycarpa by the size and ratio of length to width of dried fruit and seeds, by which it differs from R. rubrinervis and R. tonkinensis. However, it differs from R. brachycarpa by rarely mucronate seed apices, larger ratio of length to width of leaves, leaf apices acuminate to long acuminate, shorter leaf petioles, and longer fruiting pedicels. Principal component analysis based on phenotypic traits further recognised three separated groups. Rhamnella rubrinervis and R. tonkinensis were clustered into one group; the other two groups represented R. brachycarpa and two Guangxi populations, respectively. Furthermore, phylogenetic analysis of nuclear ITS sequence variations highly supported that the two Guangxi populations represented an independent evolutionary lineage and were closest to R. rubrinervis. Four fixed nucleotide sites were found and were different from R. rubrinervis. However, besides the differentiated traits in seeds and fruit, densely pilose young branches also separated them from R. rubrinervis. In addition, during our field investigations, none of the three closely related species were found at locations where this new species was distributed. Therefore, this new species, based on the two Guangxi populations, is named R. intermedia. The key to four closely related species is also presented.

Genomic basis of homoploid hybrid speciation within chestnut trees.

Hybridization can drive speciation. We examine the hypothesis that Castanea henryi var. omeiensis is an evolutionary lineage that originated from hybridization between two near-sympatric diploid taxa, C. henryi var. henryi and C. mollissima. We produce a high-quality genome assembly for mollissima and characterize evolutionary relationships among related chestnut taxa. Our results show that C. henryi var. omeiensis has a mosaic genome but has accumulated divergence in all 12 chromosomes. We observe positive correlation between admixture proportions and recombination rates across the genome. Candidate barrier genomic regions, which isolate var. henryi and mollissima, are re-assorted in the hybrid lineage. We further find that the putative barrier segments concentrate in genomic regions with less recombination, suggesting that interaction between natural selection and recombination shapes the evolution of hybrid genomes during hybrid speciation. This study highlights that reassortment of parental barriers is an important mechanism in generating biodiversity.

Rhamnella brachycarpa (Rhamnaceae), a new species from Hainan Island, China.

Rhamnella brachycarpa Z. Qiang Lu & Y. Shuai Sun, a new evergreen woody species from Hainan Island, is described and illustrated. The specimens of this new species have previously been identified and placed under R. rubrinervis (H. Lév.) Rehder, with which it shares evergreen leaves, erect and climbing habits and axillary flowering branches with bracteole leaves. However, the specimens from three distinct Hainan populations significantly differ from those of R. rubrinervis from other regions with smaller length to width ratios of leaves, fruit and seeds, smaller sizes of fruit and seeds and mucronate seed apices. Principal Component Analysis of the closely related taxa, based on multiple morphological characters, further recognised two separated groups. One of them comprises R. tonkinensis and R. rubrinervis, the other merely includes all individuals from these distinct Hainan populations. Therefore, R. brachycarpa, based on these distinct Hainan populations, is here erected as a new species, distinctly different from its published relatives.

Ancient introgression drives adaptation to cooler and drier mountain habitats in a cypress species complex.

Introgression may act as an important source of new genetic variation to facilitate the adaptation of organisms to new environments, yet how introgression might enable tree species to adapt to higher latitudes and elevations remains unclear. Applying whole-transcriptome sequencing and population genetic analyses, we present an example of ancient introgression from a cypress species (Cupressus gigantea) that occurs at higher latitude and elevation on the Qinghai-Tibet Plateau into a related species (C. duclouxiana), which has likely aided the latter species to extend its range by colonizing cooler and drier mountain habitats during postglacial periods. We show that 16 introgressed candidate adaptive loci could have played pivotal roles in response to diverse stresses experienced in a high-elevation environment. Our findings provide new insights into the evolutionary history of Qinghai-Tibet Plateau plants and the importance of introgression in the adaptation of species to climate change.

WGDdetector: a pipeline for detecting whole genome duplication events using the genome or transcriptome annotations.

BACKGROUND: With the availability of well-assembled genomes of a growing number of organisms, identifying the bioinformatic basis of whole genome duplication (WGD) is a growing field of genomics. The most extant software for detecting footprints of WGDs has been restricted to a well-assembled genome. However, the massive poor quality genomes and the more accessible transcriptomes have been largely ignored, and in theoretically they are also likely to contribute to detect WGD using dS based method. Here, to resolve these problems, we have designed a universal and simple technical tool WGDdetector for detecting WGDs using either genome or transcriptome annotations in different organisms based on the widely used dS based method. RESULTS: We have constructed WGDdetector pipeline that integrates all analyses including gene family constructing, dS estimating and phasing, and outputting the dS values of each paralogs pairs processed with only one command. We further chose four species (Arabidopsis thaliana, Juglans regia, Populus trichocarpa and Xenopus laevis) representing herb, wood and animal, to test its practicability. Our final results showed a high degree of accuracy with the previous studies using both genome and transcriptome data. CONCLUSION: WGDdetector is not only reliable and stable for genome data, but also a new way to using the transcriptome data to obtain the correct dS distribution for detecting WGD. The source code is freely available, and is implemented in Windows and Linux operation system.

Trans-lineage polymorphism and nonbifurcating diversification of the genus Picea.

Nonbifurcating divergence caused by introgressive hybridization is continuously reported for groups of closely related species. In this study, we aimed to reconstruct the genome-scale classification of deep lineages of the conifer genus Picea, establish their phylogenetic relationships and test the bifurcating hypothesis between deeply branching lineages based on genomic data. We sequenced the transcriptomes of 35 individuals of 27 taxa covering all main lineages of the genus. Four major lineages, comprising three to 12 taxa each, largely consistent with morphological evidence, were recovered across the coalescent and integrated nuclear phylogeny. However, many of the individual gene trees recovered contradict one another. Moreover, the well-supported coalescent tree inferred here differs from previous studies based on various DNA markers, with respect to topology and inter-lineage relationships. We identified the shared polymorphisms between four major lineages. ABBA-BABA tests confirmed the inter-lineage gene flow and thus violated the bifurcating divergence model. Gene flow occurred more frequently between lineages distributed in the same continent than those disjunct between continents. Our results indicate that introgression and nonbifurcating diversification apply, even between deeply branching lineages of the conifer genus Picea.

Reticulate evolution within a spruce (Picea) species complex revealed by population genomic analysis.

The role of reticulation in the rapid diversification of organisms is attracting greater attention in evolutionary biology. Evidence of genetic exchange between diverging taxa is reported frequently, although most studies fail to show how hybridization and introgression contribute to the adaptation and differentiation of introgressed taxa. Here, we report a population genomics approach to test the role of hybridization and introgression in the evolution of the Picea likiangensis species complex, which comprises four taxa occurring in the biodiversity hotspot of the Hengduan-Himalayan mountains. Based on 84,793 SNPs detected in transcriptomes of 82 trees collected from 35 localities, we identified 18 hybrids (including backcrosses) distributed within the range boundaries of the four taxa. Coalescent simulations, for each pair of taxa and for all taxa taken together, rejected several tree-like divergence models and supported instead a reticulate evolution model with secondary contacts occurring during Pleistocene glacial cycles after initial divergence in the late Pliocene. Significant gene flow occurred among some taxa after secondary contact according to an analysis based on modified ABBA-BABA statistics that accommodated a rapid diversification scenario. A novel finding was that introgression between certain taxa can contribute to increasing divergence (and possibly reproductive isolation) between those taxa and other taxa within a complex at some loci. These results illuminate the reticulate nature of evolution within the P. likiangensis complex and highlight the value of population genomic data in detecting the effects of introgression in the rapid diversification of related taxa.

Population genomic analysis reveals that homoploid hybrid speciation can be a lengthy process.

An increasing number of species are thought to have originated by homoploid hybrid speciation (HHS), but in only a handful of cases are details of the process known. A previous study indicated that Picea purpurea, a conifer in the Qinghai-Tibet Plateau (QTP), originated through HHS from P. likiangensis and P. wilsonii. To investigate this origin in more detail, we analysed transcriptome data for 114 individuals collected from 34 populations of the three Picea species from their core distributions in the QTP. Phylogenetic, principal component and admixture analyses of nuclear SNPs showed the species to be delimited genetically and that P. purpurea was admixed with approximately 60% of its ancestry derived from P. wilsonii and 40% from P. likiangensis. Coalescent simulations revealed the best-fitting model of origin involved formation of an intermediate hybrid lineage between P. likiangensis and P. wilsonii approximately 6 million years ago (mya), which backcrossed to P. wilsonii to form P. purpurea approximately one mya. The intermediate hybrid lineage no longer exists and is referred to as a "ghost" lineage. Our study emphasizes the power of population genomic analysis combined with coalescent analysis for reconstructing the stages involved in the origin of a homoploid hybrid species over an extended period. In contrast to other studies, we show that these stages can in some instances span a relatively long period of evolutionary time.

Domestication Origin and Breeding History of the Tea Plant (Camellia sinensis) in China and India Based on Nuclear Microsatellites and cpDNA Sequence Data.

Although China and India are the two largest tea-producing countries, the domestication origin and breeding history of the tea plant in these two countries remain unclear. Our previous study suggested that the tea plant includes three distinct lineages (China type tea, Chinese Assam type tea and Indian Assam type tea), which were independently domesticated in China and India, respectively. To determine the origin and historical timeline of tea domestication in these two countries we used a combination of 23 nSSRs (402 samples) and three cpDNA regions (101 samples) to genotype domesticated tea plants and its wild relative. Based on a combination of demographic modeling, NewHybrids and Neighbour joining tree analyses, three independent domestication centers were found. In addition, two origins of Chinese Assam type tea were detected: Southern and Western Yunnan of China. Results from demographic modeling suggested that China type tea and Assam type tea first diverged 22,000 year ago during the last glacial maximum and subsequently split into the Chinese Assam type tea and Indian Assam type tea lineages 2770 year ago, corresponding well with the early record of tea usage in Yunnan, China. Furthermore, we found that the three tea types underwent different breeding histories where hybridization appears to have been the most important approach for tea cultivar breeding and improvements: a high proportion of the hybrid lineages were found to be F2 and BCs. Collectively, our results underscore the necessity for the conservation of Chinese Assam type tea germplasm and landraces as a valuable resource for future tea breeding.

Late Pleistocene climate change promoted divergence between Picea asperata and P. crassifolia on the Qinghai-Tibet Plateau through recent bottlenecks.

Divergence during the early stage of speciation can be driven by a population bottleneck via reduced gene flow and enhanced lineage sorting. In this study, we aimed to examine whether such bottlenecks occurred during the initial speciation of two closely related spruce species Picea asperata and P. crassifolia occurring on the Qinghai-Tibet Plateau (QTP). We analyzed sequences of three chloroplast, two mitochondrial DNA fragments and a further 13 nuclear loci from 216 individuals of the two species. Both species showed a low level of genetic diversity in contrast to other congeners occurring in the QTP and adjacent regions. The estimated population sizes of P. asperata and P. crassifolia are less than the ancestral population size before splitting. These results together with multiple statistical tests (Tajima's D, Fu and Li's D* and F*) suggest that these two species underwent recent bottlenecks. Based on approximate Bayesian computation (ABC), we also determined that the period of the population shrinkage was consistent with the interspecific divergence during the late Pleistocene. The reduced population sizes and the divergent selection may together have triggered the initial divergence under high gene flow between these two species. Our results therefore highlight the importance of climatic oscillations during the late Pleistocene in promoting speciation through changing demographic sizes of the ancestral species on the QTP and in adjacent regions.

Coevolutionary elaboration of pollination-related traits in an alpine ginger (Roscoea purpurea) and a tabanid fly in the Nepalese Himalayas.

Geographical variation in the interacting traits of plant-pollinator mutualism can lead to local adaptive differentiation. We tested Darwin's hypothesis of reciprocal selection as a key driving force for the evolution of floral traits of an alpine ginger (Roscoea purpurea) and proboscis length of a tabanid fly (Philoliche longirostris). We documented the pattern of trait variation in R. purpurea and P. longirostris across five populations. At each site, we quantified pollinator-mediated selection on floral display area, inflorescence height and corolla length of R. purpurea by comparing selection gradients for flowers exposed to natural pollination and to supplemental hand pollination. Reciprocal selection between plant and fly was examined at two sites via the relationship between proboscis length and nectar consumption (fly benefit) and corolla length and pollen deposition (plant benefit). Local corolla tube length was correlated with local fly proboscis length among the five sites. We found strong linear selection imposed by pollinators on corolla tube length at all sites, but there was no consistent relationship of fitness to inflorescence height or floral display area. Selection between corolla length and proboscis length was reciprocal at the two experimental sites examined. The geographical pattern of trait variation and the evidence of selection is consistent with a mosaic of local, species-specific reciprocal selection acting as the major driving force for the evolution of corolla length of R. purpurea and proboscis length of P. longirostris.

Genomic evidence for polyphyletic origins and interlineage gene flow within complex taxa: a case study of Picea brachytyla in the Qinghai-Tibet Plateau.

Hybridization and introgression are believed to play important roles in plant evolution. However, few empirical studies have been designed to clarify the ways in which these processes complicate taxonomic delimitation. Recent phylogenetic studies based on a number of different DNA fragments have indicated that Picea brachytyla in the eastern Qinghai-Tibet Plateau is polyphyletic, a finding that contrasts with traditional taxonomy based on morphological traits. We aimed to test this conflict using transcriptomic data from 26 trees collected from multiple localities for this and related species. Our phylogenomic analyses suggest that the sampled trees of P. brachytyla cluster into two distinct lineages corresponding to the two taxonomically recognized intraspecific varieties: var. brachytyla and var. complanata. However, var. complanata nested within Picea likiangensis and was sister to one of its three varieties, while var. brachytyla comprised an isolated lineage. The polyphyletic origin hypothesis was further supported by likelihood tree comparisons using Akaike's information criterion (AIC) and by coalescent analyses under the snapp model. However, our abba-baba and ∂a∂i analyses suggest that gene flow between these two independently evolved lineages has been extensive and bidirectional. Introgression, as well as parallel evolution in the arid habitats common to both lineages, may have given rise to their morphological similarity. Our study highlights the importance of genomic evidence and the use of newly developed coalescent analysis methods for clarifying the evolutionary complexity of certain plant taxa.