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Genomics ; 112(1): 919-929, 2020 01.
Artigo em Inglês | MEDLINE | ID: mdl-31175977

RESUMO

Arthrinium phaeospermum (Corda) M.B. Ellis is a globally distributed pathogenic fungus with a wide host range; its hosts include not only plants, but also humans and animals. This study aimed to develop genomic resources for A. phaeospermum to provide solid data and a theoretical basis for further studies of its pathogenesis, transcriptomics, proteomics, metabolomics and RNA genomics. The genome was obtained from the mycelia of the strain AP-Z13 using a combination of analyses with the high-throughput Illumina HiSeq 4000 system and PacBio RSII LongRead sequencing platform. Functional annotation was performed by BLASTing protein sequences against those in different publicly available databases to obtain their corresponding annotations. The genome is 48.45 Mb in size, with an N90 scaffold size of 1,931,147 bp, and encodes 19,836 putative predicted genes. This is the first report of the genome-scale assembly and annotation for A. phaeospermum, the first species in the genus Arthrinium to be subjected to whole genome sequencing.


Assuntos
Ascomicetos/genética , Genoma Fúngico , Ascomicetos/enzimologia , Ascomicetos/metabolismo , Metabolismo dos Carboidratos/genética , DNA Fúngico/química , Proteínas Fúngicas/genética , Ontologia Genética , Genômica , Sequenciamento de Nucleotídeos em Larga Escala , Interações Hospedeiro-Patógeno/genética , Redes e Vias Metabólicas/genética , RNA não Traduzido/genética , Sequências Repetitivas de Ácido Nucleico , Metabolismo Secundário/genética , Análise de Sequência de DNA , Sequenciamento Completo do Genoma
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