Improving taxonomic classification of marine zooplankton by molecular approach: registration of taxonomically verified 18S and 28S rRNA gene sequences.

Background: Zooplankton plays an important role in the marine ecosystem. A high level of taxonomic expertise is necessary for accurate species identification based on morphological characteristics. As an alternative method to morphological classification, we focused on a molecular approach using 18S and 28S ribosomal RNA (rRNA) gene sequences. This study investigates how the accuracy of species identification by metabarcoding improves when taxonomically verified sequences of dominant zooplankton species are added to the public database. The improvement was tested by using natural zooplankton samples. Methods: rRNA gene sequences were obtained from dominant zooplankton species from six sea areas around Japan and registered in the public database for improving the accuracy of taxonomic classifications. Two reference databases with and without newly registered sequences were created. Comparison of detected OTUs associated with single species between the two references was done using field-collected zooplankton samples from the Sea of Okhotsk for metabarcoding analysis to verify whether or not the newly registered sequences improved the accuracy of taxonomic classifications. Results: A total of 166 sequences in 96 species based on the 18S marker and 165 sequences in 95 species based on the 28S marker belonging to Arthropoda (mostly Copepoda) and Chaetognatha were registered in the public database. The newly registered sequences were mainly composed of small non-calanoid copepods, such as species belonging to Oithona and Oncaea. Based on the metabarcoding analysis of field samples, a total of 18 out of 92 OTUs were identified at the species level based on newly registered sequences in the data obtained by the 18S marker. Based on the 28S marker, 42 out of 89 OTUs were classified at the species level based on taxonomically verified sequences. Thanks to the newly registered sequences, the number of OTUs associated with a single species based on the 18S marker increased by 16% in total and by 10% per sample. Based on the 28S marker, the number of OTUs associated with a single species increased by 39% in total and by 15% per sample. The improved accuracy of species identification was confirmed by comparing different sequences obtained from the same species. The newly registered sequences had higher similarity values (mean >0.003) than the pre-existing sequences based on both rRNA genes. These OTUs were identified at the species level based on sequences not only present in the Sea of Okhotsk but also in other areas. Discussion: The results of the registration of new taxonomically verified sequences and the subsequent comparison of databases based on metabarcoding data of natural zooplankton samples clearly showed an increase in accuracy in species identification. Continuous registration of sequence data covering various environmental conditions is necessary for further improvement of metabarcoding analysis of zooplankton for monitoring marine ecosystems.

A new species of the genus Enneapterygius (Perciformes: Tripterygiidae) from Japan and the Philippines, with a synopsis and synonymy of related species.

A new species of triplefin (Tripterygiidae), Enneapterygius olivaceus n. sp., is described on the basis of 28 type specimens (13.725.1 mm standard length: SL) from Japan (Ryukyu Islands) and the Philippines. The new species is characterized by having 1822 (20) notched lateral-line scales, 2 or 3 (2) scales below the 1st notched lateral-line scale, a single symphyseal mandibular-pore (mandibular pore formula 3 + 1 + 3), black pectoral fins in nuptial males, and no distinct line on the anal-fin membranes. In this study, Enneapterygius minutus (Gnther, 1877), previously regarded as a junior synonym of Enneapterygius philippinus (Peters, 1868), is considered a valid species, being redescribed based on 109 specimens, including the re-examined type specimens. Diagnostic characters and distributional records of the species closely related to E. olivaceus n. sp. are reviewed. Enneapterygius tusitalae Jordan & Seale, 1906, Enneapterygius pardochir Jordan & Seale, 1906 and Enneapterygius punctulatus Herre, 1935 are regarded here as junior synonyms of E. minutus; Tripterygium callionymi Weber, 1909 and Enneapterygius waigiensis Herre, 1935 are junior synonyms of Enneapterygius tutuilae Jordan & Seale, 1906; Enneapterygius cerasinus Jordan & Seale, 1906 is a junior synonym of Enneapterygius unimaculatus Fricke, 1994; Enneapterygius fuligicauda Fowler, 1946 is a senior synonym of Enneapterygius similis Fricke, 1997.