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1.
J Geod ; 97(12): 110, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-38054193

RESUMO

Comparing measurements of absolute sea level by satellite altimetry and relative sea level by a tide gauge can reveal errors in either measurement system. Combining the measurements can determine vertical land motion (VLM) at the tide gauge. We here discuss ten case studies in which a tide gauge has likely experienced a small (≤10 cm), discontinuous offset in the vertical, suggesting inadvertent loss of reference-level stability. Proper interpretation of offsets is helped if independent VLM measurements from nearby geodetic stations are available. In two cases, earthquake-induced VLM cannot be ruled out, although it appears unlikely. Offsets as small as 1-2 cm can be detected when both altimeter and tide gauge successfully observe the same ocean signal. This is most likely to occur for tide gauges located on small, open-ocean islands. Tide gauges near large land masses are typically more challenging owing to inadequacies of satellite altimetry near land and to differences between coastal and open-ocean sea levels. The case studies highlight the utility of satellite altimetry for tide-gauge quality control. Supplementary Information: The online version contains supplementary material available at 10.1007/s00190-023-01800-7.

2.
Sci Immunol ; 5(43)2020 01 31.
Artigo em Inglês | MEDLINE | ID: mdl-32005680

RESUMO

Reassessment of citrullinome cargo in neutrophil extracellular traps confirms the presence of citrullinated peptides.

3.
Nat Commun ; 9(1): 4783, 2018 11 14.
Artigo em Inglês | MEDLINE | ID: mdl-30429478

RESUMO

Citrullination of proteins, a post-translational conversion of arginine residues to citrulline, is recognized in rheumatoid arthritis, but largely undocumented in cancer. Here we show that citrullination of the extracellular matrix by cancer cell derived peptidylarginine deiminase 4 (PAD4) is essential for the growth of liver metastases from colorectal cancer (CRC). Using proteomics, we demonstrate that liver metastases exhibit higher levels of citrullination and PAD4 than unaffected liver, primary CRC or adjacent colonic mucosa. Functional significance for citrullination in metastatic growth is evident in murine models where inhibition of citrullination substantially reduces liver metastatic burden. Additionally, citrullination of a key matrix component collagen type I promotes greater adhesion and decreased migration of CRC cells along with increased expression of characteristic epithelial markers, suggesting a role for citrullination in promoting mesenchymal-to-epithelial transition and liver metastasis. Overall, our study reveals the potential for PAD4-dependant citrullination to drive the progression of CRC liver metastasis.


Assuntos
Citrulinação/genética , Neoplasias Colorretais/genética , Matriz Extracelular/metabolismo , Neoplasias Hepáticas/genética , Desiminases de Arginina em Proteínas/genética , Animais , Adesão Celular , Movimento Celular , Colágeno Tipo I/metabolismo , Neoplasias Colorretais/metabolismo , Neoplasias Colorretais/patologia , Transição Epitelial-Mesenquimal/genética , Células HCT116 , Células HT29 , Humanos , Hidrolases/genética , Neoplasias Hepáticas/metabolismo , Neoplasias Hepáticas/secundário , Camundongos , Metástase Neoplásica , Proteína-Arginina Desiminase do Tipo 4
4.
Virology ; 287(1): 71-8, 2001 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-11504543

RESUMO

Gene expression from HIV-based gene therapy vectors or live-attenuated HIV-1 vaccines requires RNA transcription supported by the HIV-1 promoter, the long terminal repeat (LTR). Delivery of live-attenuated HIV-1 vaccines as plasmid DNA would overcome problems associated with production of attenuated HIV-1 strains. We investigated the expression of reporter plasmids and proviral HIV-1 constructs driven by either the HIV-1 LTR or LTRs with deletions in the U3 enhancer regions. LTR-driven plasmids were inoculated by gene gun into both human epidermis ex vivo and macaques in vivo. The HIV-1 LTR drove reporter gene expression in human and macaque skin, although with 15- to 20-fold less efficiency compared to the immediate-early cytomegalovirus promoter. A deleted LTR derived from a naturally attenuated HIV-1 strain infecting a member of the well-characterized Sydney Blood Bank Cohort of long-term nonprogressors was 5-fold less efficient in expression of the reporter gene compared to wild-type LTR. Delivery of proviral wild-type HIV-1 DNA constructs to human skin resulted in recovery of HIV-1 from cells emigrating from the epidermis, providing an ex vivo model of the infectivity of proviral HIV-1 DNA. However, delivery of proviral HIV-1 DNA containing deletions in either the LTR, Nef, or the secondary viral transcription activator,Vpr, significantly reduced HIV-1 replication in this model. The early coexpression of Tat from a second plasmid did not restore replication. Thus, although attenuated lentiviral vaccines might be deliverable as proviral DNA constructs in primate subjects, significant improvements are needed to enhance the efficiency of this method.


Assuntos
Vacinas contra a AIDS/genética , Biolística , Regulação Viral da Expressão Gênica , Infecções por HIV/genética , HIV-1 , Pele/virologia , Sequências Repetidas Terminais/genética , Animais , Citomegalovirus/genética , Genes Precoces , Genes Reporter , Genes nef , Humanos , Injeções Subcutâneas , Macaca nemestrina , Plasmídeos , Transfecção , Vacinas Atenuadas/genética , beta-Galactosidase/biossíntese , beta-Galactosidase/genética
5.
J Biol Chem ; 276(36): 33721-9, 2001 Sep 07.
Artigo em Inglês | MEDLINE | ID: mdl-11445580

RESUMO

The p300/cAMP response element-binding protein-binding protein (CBP) family members include human p300 and cAMP response element-binding protein-binding protein, which are both important transcriptional coactivators and histone acetyltransferases. Although the role of these enzymes in transcriptional regulation has been extensively documented, the molecular mechanisms of p300 and CBP histone acetyltransferase catalysis are poorly understood. Herein, we describe the first detailed kinetic characterization of p300 using full-length purified recombinant enzyme. These studies have employed peptide substrates to systematically examine the substrate specificity requirements and the kinetic mechanism of this enzyme. The importance of nearby positively charged residues in lysine targeting was demonstrated. The strict structural requirement of the lysine side chain was shown. The catalytic mechanism of p300 was shown to follow a ping-pong kinetic pathway and viscosity experiments revealed that product release and/or a conformational change were likely rate-limiting in catalysis. Detailed analysis of the p300 selective inhibitor Lys-CoA showed that it exhibited slow, tight-binding kinetics.


Assuntos
Acetiltransferases/metabolismo , Proteínas Nucleares/química , Proteínas de Saccharomyces cerevisiae , Transativadores/química , Transcrição Gênica , Ativação Transcricional , Sequência de Aminoácidos , Animais , Catálise , Relação Dose-Resposta a Droga , Histona Acetiltransferases , Histonas/química , Histonas/metabolismo , Humanos , Cinética , Modelos Químicos , Dados de Sequência Molecular , Peptídeos/química , Plasmídeos/metabolismo , Ligação Proteica , Homologia de Sequência de Aminoácidos , Fatores de Tempo , Xenopus laevis
7.
J Biol Chem ; 276(26): 23929-36, 2001 Jun 29.
Artigo em Inglês | MEDLINE | ID: mdl-11279088

RESUMO

The aminoglycoside antibiotic kinases (APHs) constitute a clinically important group of antibiotic resistance enzymes. APHs share structural and functional homology with Ser/Thr and Tyr kinases, yet only five amino acids are invariant between the two groups of enzymes and these residues are all located within the nucleotide binding regions of the proteins. We have performed site-directed mutagenesis on all five conserved residues in the aminoglycoside kinase APH(3')-IIIa: Lys(44) and Glu(60) involved in ATP capture, a putative active site base required for deprotonating the incoming aminoglycoside hydroxyl group Asp(190), and the Mg(2+) ligands Asn(195) and Glu(208), which coordinate two Mg(2+) ions, Mg1 and Mg2. Previous structural and mutagenesis evidence have demonstrated that Lys(44) interacts directly with the phosphate groups of ATP; mutagenesis of invariant Glu(60), which forms a salt bridge with the epsilon-amino group of Lys(44), demonstrated that this residue does not play a critical role in ATP recognition or catalysis. Results of mutagenesis of Asp(190) were consistent with a role in proper positioning of the aminoglycoside hydroxyl during phosphoryl transfer but not as a general base. The Mg1 and Mg2 ligand Asp(208) was found to be absolutely required for enzyme activity and the Mg2 ligand Asn(195) is important for Mg.ATP recognition. The mutagenesis results together with solvent isotope, solvent viscosity, and divalent cation requirements are consistent with a dissociative mechanism of phosphoryl transfer where initial substrate deprotonation is not essential for phosphate transfer and where Mg2 and Asp(208) likely play a critical role in stabilization of a metaphosphate-like transition state. These results lay the foundation for the synthesis of transition state mimics that could reverse aminoglycoside antibiotic resistance in vivo.


Assuntos
Canamicina Quinase/química , Trifosfato de Adenosina/metabolismo , Animais , Antibacterianos/farmacologia , Sítios de Ligação , Catálise , Sequência Conservada , Resistência Microbiana a Medicamentos , Endopeptidases/química , Canamicina/farmacologia , Canamicina Quinase/genética , Canamicina Quinase/metabolismo , Cinética , Magnésio/química , Testes de Sensibilidade Microbiana , Modelos Químicos , Mutagênese Sítio-Dirigida , Viscosidade
8.
J Struct Biol ; 131(2): 164-9, 2000 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-11042088

RESUMO

The structured core of the N-terminal 3'-5' exonuclease domain of epsilon, the proofreading subunit of Escherichia coli DNA polymerase III, was defined by multidimensional NMR experiments with uniformly (15)N-labeled protein: it comprises residues between Ile-4 and Gln-181. A 185-residue fragment, termed epsilon(1-185), was crystallized by the hanging drop vapor diffusion method in the presence of thymidine-5'-monophosphate, a product inhibitor, and Mn(2+) at pH 5.8. The crystals are tetragonal, with typical dimensions 0.2 mm x 0.2 mm x 1.0 mm, grow over about 2 weeks at 4 degrees C, and diffract X-rays to 2.0 A. The space group was determined to be P4(n)2(1)2 (n = 0, 1, 2, 3), with unit cell dimensions a = 60.8 A, c = 111.4 A.


Assuntos
Domínio Catalítico , DNA Polimerase III/química , Escherichia coli/enzimologia , Exodesoxirribonucleases/química , Quimotripsina/metabolismo , Cristalização , Cristalografia por Raios X , DNA Polimerase III/genética , DNA Polimerase III/metabolismo , Eletroforese em Gel de Poliacrilamida , Exodesoxirribonucleases/genética , Exodesoxirribonucleases/metabolismo , Manganês/metabolismo , Mutagênese , Ressonância Magnética Nuclear Biomolecular , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/metabolismo , Estrutura Terciária de Proteína , Subunidades Proteicas , Alinhamento de Sequência , Timidina Monofosfato/metabolismo
9.
Nat Struct Biol ; 7(3): 238-44, 2000 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-10700284

RESUMO

The structure of the antifungal drug target homoserine dehydrogenase (HSD) was determined from Saccharomyces cerevisiae in apo and holo forms, and as a ternary complex with bound products, by X-ray diffraction. The three forms show that the enzyme is a dimer, with each monomer composed of three regions, the nucleotide-binding region, the dimerization region and the catalytic region. The dimerization and catalytic regions have novel folds, whereas the fold of the nucleotide-binding region is a variation on the Rossmann fold. The novel folds impose a novel composition and arrangement of active site residues when compared to all other currently known oxidoreductases. This observation, in conjunction with site-directed mutagenesis of active site residues and steady-state kinetic measurements, suggest that HSD exhibits a new variation on dehydrogenase chemistry.


Assuntos
Homosserina Desidrogenase/química , Homosserina Desidrogenase/metabolismo , Modelos Químicos , Saccharomyces cerevisiae/enzimologia , Apoenzimas/química , Apoenzimas/genética , Apoenzimas/metabolismo , Sítios de Ligação , Catálise , Domínio Catalítico , Cátions/metabolismo , Cristalografia por Raios X , Dimerização , Holoenzimas/química , Holoenzimas/genética , Holoenzimas/metabolismo , Homosserina/metabolismo , Homosserina Desidrogenase/genética , Hidrogênio/metabolismo , Metais/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Mutação/genética , NAD/análogos & derivados , NAD/metabolismo , Conformação Proteica , Dobramento de Proteína , Saccharomyces cerevisiae/genética , Relação Estrutura-Atividade
10.
J Biol Chem ; 274(43): 30697-706, 1999 Oct 22.
Artigo em Inglês | MEDLINE | ID: mdl-10521458

RESUMO

The aminoglycoside phosphotransferases (APHs) are widely distributed among pathogenic bacteria and are employed to covalently modify, and thereby detoxify, the clinically relevant aminoglycoside antibiotics. The crystal structure for one of these aminoglycoside kinases, APH(3')-IIIa, has been determined in complex with ADP and analysis of the electrostatic surface potential indicates that there is a large anionic depression present adjacent to the terminal phosphate group of the nucleotide. This region also includes a conserved COOH-terminal alpha-helix that contains the COOH-terminal residue Phe(264). We report here mutagenesis and computer modeling studies aimed at examining the mode of aminoglycoside binding to APH(3')-IIIa. Specifically, seven site mutants were studied, five from the COOH-terminal helix (Asp(261), Glu(262), and Phe(264)), and two additional residues that line the wall of the anionic depression (Tyr(55) and Arg(211)). Using a molecular modeling approach, six ternary complexes of APH(3')-IIIa.ATP with the antibiotics, kanamycin, amikacin, butirosin, and ribostamycin were independently constructed and these agree well with the mutagenesis data. The results obtained show that the COOH-terminal carboxylate of Phe(264) is critical for proper function of the enzyme. Furthermore, these studies demonstrate that there exists multiple binding modes for the aminoglycosides, which provides a molecular basis for the broad substrate- and regiospecificity observed for this enzyme.


Assuntos
Antibacterianos/metabolismo , Antibacterianos/farmacologia , Escherichia coli/efeitos dos fármacos , Canamicina Quinase/química , Canamicina Quinase/metabolismo , Sequência de Aminoácidos , Aminoglicosídeos , Antibacterianos/química , Sítios de Ligação , Sequência de Carboidratos , Sequência Conservada , Escherichia coli/genética , Canamicina Quinase/genética , Testes de Sensibilidade Microbiana , Modelos Moleculares , Conformação Molecular , Dados de Sequência Molecular , Estrutura Molecular , Mutagênese Sítio-Dirigida , Ressonância Magnética Nuclear Biomolecular , Fenilalanina , Reação em Cadeia da Polimerase , Estrutura Secundária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Deleção de Sequência , Eletricidade Estática
11.
Front Biosci ; 4: D9-21, 1999 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-9872733

RESUMO

Aminoglycoside antibiotics constitute an important class of clinically useful drugs which are imperiled by the emergence of resistant organisms. Aminoglycoside resistance in the clinics is primarily due to the presence of modifying enzymes which N-acetylate, O-adenylate or O-phosphorylate the antibiotics. The latter family of enzymes are termed the aminoglycoside phosphotransferases or kinases and are the subject of this review. There are seven classes of aminoglycoside phosphotransferases (APH(3'), APH(2''), APH(3'off'), APH(6), APH(9), APH(4), APH(7'')) and many isozymes in each class, and although there is very little overall general sequence homology among these enzymes, certain signature residues and sequences are common. The recent determination of the three-dimensional structure of the broad spectrum aminoglycoside kinase APH(3')-IIIa complexed with the product ADP, in addition to mechanistic and mutagenic studies on this and related enzymes, has added a great deal to our understanding of this class of antibiotic resistance enzyme. In particular, the revelation of structural and mechanistic similarities between APHs and Ser/Thr and Tyr kinases has set the stage for future inhibition studies which could prove important in reversing aminoglycoside resistance.


Assuntos
Antibacterianos/metabolismo , Bactérias Gram-Negativas/enzimologia , Bactérias Gram-Positivas/enzimologia , Canamicina Quinase , Aminoglicosídeos , Resistência Microbiana a Medicamentos , Evolução Molecular , Bactérias Gram-Negativas/efeitos dos fármacos , Bactérias Gram-Negativas/genética , Bactérias Gram-Positivas/efeitos dos fármacos , Bactérias Gram-Positivas/genética , Canamicina Quinase/antagonistas & inibidores , Canamicina Quinase/química , Canamicina Quinase/classificação , Canamicina Quinase/genética , Canamicina Quinase/metabolismo , Modelos Moleculares , Mycobacterium/enzimologia , Conformação Proteica , Especificidade por Substrato , Terminologia como Assunto
12.
Chem Biol ; 6(1): 11-8, 1999 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-9889150

RESUMO

BACKGROUND: Bacterial resistance to aminoglycoside antibiotics occurs primarily through the expression of modifying enzymes that covalently alter the drugs by O-phosphorylation, O-adenylation or N-acetylation. Aminoglycoside phosphotransferases (APHs) catalyze the ATP-dependent phosphorylation of these antibiotics. Two particular enzymes in this class, APH(3')-IIIa and AAC(6')-APH(2"), are produced in gram-positive cocci and have been shown to phosphorylate aminoglycosides on their 3' and 2" hydroxyl groups, respectively. The three-dimensional structure of APH (3')-IIIa is strikingly similar to those of eukaryotic protein kinases (EPKs), and the observation, reported previously, that APH(3')-IIIa and AAC(6')-APH(2") are effectively inhibited by EPK inhibitors suggested the possibility that these aminoglycoside kinases might phosphorylate EPK substrates. RESULTS: Our data demonstrate unequivocally that APHs can phosphorylate several EPK substrates and that this phosphorylation occurs exclusively on serine residues. Phosphorylation of Ser/Thr protein kinase substrates by APHs was considerably slower than phosphorylation of aminoglycosides under identical assay conditions, which is consistent with the primary biological roles of the enzymes. CONCLUSIONS: These results demonstrate a functional relationship between aminoglycoside and protein kinases, expanding on our previous observations of similarities in protein structure, enzyme mechanism and sensitivity to inhibitors, and suggest an evolutionary link between APHs and EPKs.


Assuntos
Antibacterianos/metabolismo , Canamicina Quinase/metabolismo , Proteínas Serina-Treonina Quinases/metabolismo , Sequência de Aminoácidos , Aminoglicosídeos , Animais , Domínio Catalítico , Bovinos , Humanos , Técnicas In Vitro , Canamicina Quinase/química , Modelos Moleculares , Dados de Sequência Molecular , Fosforilação , Conformação Proteica , Proteínas Serina-Treonina Quinases/química , Homologia de Sequência de Aminoácidos
13.
J Biol Chem ; 273(24): 14788-95, 1998 Jun 12.
Artigo em Inglês | MEDLINE | ID: mdl-9614079

RESUMO

The bacterium Legionella pneumophila is the responsible agent for Legionnaires' disease and has recently been shown to harbor a gene encoding a kinase that confers resistance to the aminoglycoside antibiotic spectinomycin (Suter, T. M., Viswanathan, V. K., and Cianciotto, N. P. (1997) Antimicrob. Agents Chemother. 41, 1385-1388). We report the overproduction, purification, and characterization of this spectinomycin kinase from an expressing system in Escherichia coli. The purified protein shows stringent substrate specificity for spectinomycin with Km = 21.5 microM and kcat = 24.2 s-1 and does not bind other aminoglycosides including kanamycin, amikacin, neomycin, butirosin, streptomycin, or apramycin. Purification of spectinomycin phosphate followed by characterization by mass spectrometry and 1H, 13C, and 31P NMR established the site of phosphorylation to be at the hydroxyl group at position 9. Thus this enzyme is designated APH(9)-Ia (where APH is aminoglycoside kinase). The enzyme was inactivated by the electrophilic ATP analogue 5'-[p-(fluorosulfonyl)benzoyl]adenosine, consistent with a nucleophilic residue such as Lys lining the nucleotide binding pocket. Site-directed mutagenesis of Lys-52 and Asp-212 to Ala confirmed that these residues were important for catalysis, with Lys-52 playing a potential role in ATP binding and Asp-212 in phosphoryl transfer. Thio and solvent isotope effect experiments in the presence of either Mg2+ or Mn2+ were consistent with a kinetic mechanism in which phosphate transfer does not contribute significantly to the rate-limiting step. These results establish that APH(9)-Ia is a highly specific antibiotic resistance kinase and provides the requisite mechanistic information for future structural studies.


Assuntos
Adenosina/análogos & derivados , Legionella pneumophila/enzimologia , Fosfotransferases (Aceptor do Grupo Álcool)/química , Adenosina/farmacologia , Trifosfato de Adenosina/análogos & derivados , Trifosfato de Adenosina/farmacologia , Aminoglicosídeos , Antibacterianos/metabolismo , Proteínas de Bactérias/química , Resistência a Medicamentos/fisiologia , Cinética , Doença dos Legionários/microbiologia , Espectroscopia de Ressonância Magnética , Mutagênese Sítio-Dirigida/genética , Fosforilação , Proteínas Recombinantes/química , Alinhamento de Sequência , Especificidade por Substrato
14.
Cell ; 89(6): 887-95, 1997 Jun 13.
Artigo em Inglês | MEDLINE | ID: mdl-9200607

RESUMO

Bacterial resistance to aminoglycoside antibiotics is almost exclusively accomplished through either phosphorylation, adenylylation, or acetylation of the antibacterial agent. The aminoglycoside kinase, APH(3')-IIIa, catalyzes the phosphorylation of a broad spectrum of aminoglycoside antibiotics. The crystal structure of this enzyme complexed with ADP was determined at 2.2 A. resolution. The three-dimensional fold of APH(3')-IIIa reveals a striking similarity to eukaryotic protein kinases despite a virtually complete lack of sequence homology. Nearly half of the APH(3')-IIIa sequence adopts a conformation identical to that seen in these kinases. Substantial differences are found in the location and conformation of residues presumably responsible for second-substrate specificity. These results indicate that APH(3') enzymes and eukaryotic-type protein kinases share a common ancestor.


Assuntos
Antibacterianos , Resistência Microbiana a Medicamentos , Células Eucarióticas/enzimologia , Fosfotransferases (Aceptor do Grupo Álcool)/química , Aminoglicosídeos , Sítios de Ligação/fisiologia , Cristalografia , Enterococcus/química , Enterococcus/enzimologia , Enterococcus/genética , Canamicina Quinase , Dados de Sequência Molecular , Fosfotransferases (Aceptor do Grupo Álcool)/genética , Fosfotransferases (Aceptor do Grupo Álcool)/metabolismo , Proteínas Quinases/química , Proteínas Quinases/genética , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Homologia de Sequência de Aminoácidos , Transdução de Sinais/fisiologia , Staphylococcus/química , Staphylococcus/enzimologia , Staphylococcus/genética
15.
Chem Biol ; 3(9): 747-55, 1996 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-8939691

RESUMO

BACKGROUND: The enzyme aminoglycoside 3'-phosphotransferase Type IIIa (APH(3')-IIIa), confers resistance to many aminoglycoside antibiotics by regiospecific phosphorylation of their hydroxyl groups. The chemical mechanism of phosphoryl transfer is unknown. Based on sequence homology, it has been suggested that a conserved His residue, His188, could be phosphorylated by ATP, and this phospho-His would transfer the phosphate to the incoming aminoglycoside. We have used chemical modification, site-directed mutagenesis and positional isotope exchange methods to probe the mechanism of phosphoryl transfer by APH(3')-IIIa. RESULTS: Chemical modification by diethylpyrocarbonate implicated His in aminoglycoside phosphorylation by APH(3')-IIIa. We prepared His --> Ala mutants of all four His residues in APH(3')-IIIa and found minimal effects of the mutations on the steady-state phosphorylation of several aminoglycosides. One of these mutants, His188Ala, was largely insoluble when compared to the wild-type enzyme. Positional isotope exchange experiments using gamma-[18O]-ATP did not support a double-displacement mechanism. CONCLUSIONS: His residues are not required for aminoglycoside phosphorylation by APH(3')-IIIa. The conserved His 188 is thus not a phosphate accepting residue but does seem to be important for proper enzyme folding. Positional isotope exchange experiments are consistent with direct attack of the aminoglycoside hydroxyl group on the gamma-phosphate of ATP.


Assuntos
Enterococcus/enzimologia , Histidina/metabolismo , Fosfatos/metabolismo , Fosfotransferases (Aceptor do Grupo Álcool)/metabolismo , Staphylococcus/enzimologia , Trifosfato de Adenosina/metabolismo , Western Blotting , Sequência de Carboidratos , Fenômenos Químicos , Química , Clonagem Molecular , Sequência Conservada/genética , Dietil Pirocarbonato/farmacologia , Resistência a Medicamentos/genética , Canamicina Quinase , Cinética , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida/genética , Oligossacarídeos/química , Oligossacarídeos/metabolismo , Fosforilação , Fosfotransferases (Aceptor do Grupo Álcool)/genética , Dobramento de Proteína , Alinhamento de Sequência
16.
Biochemistry ; 35(26): 8686-95, 1996 Jul 02.
Artigo em Inglês | MEDLINE | ID: mdl-8679631

RESUMO

The broad-spectrum aminoglycoside phosphotransferase, APH(3')-IIIa, confers resistance to several aminoglycoside antibiotics in opportunistic pathogens of the genera Staphylococcus and Enterococcus. The profile of the drug resistance phenotype suggested that the enzyme would transfer a phosphate group from ATP to the 3'-hydroxyl of aminoglycosides. In addition, resistance to the 3'-deoxyaminoglycoside antibiotic, lividomycin A, suggested possible transfer to the 5"-hydroxyl of the ribose [Trieu-Cuot, P., & Courvalin, P. (1983) Gene 23, 331-341]. Using purified overexpressed enzyme, we have prepared and purified the products of APH(3')-IIIa-dependent phosphorylation of several of aminoglycoside antibiotics. Mass spectral analysis revealed that 4,6-disubstituted aminocyclitol antibiotics such as amikacin and kanamycin are monophosphorylated, while 4,5-disubstituted aminoglycosides such as butirosin A, ribostamycin, and neomycin B are both mono- and diphosphorylated by APH(3')-IIIa. Using a series of one- and two-dimensional 1H, 13C, and 31P NMR experiments, we have unambiguously assigned the regiospecificity of phosphoryl transfer to several antibiotics. The 4,6-disubstituted aminocyclitol antibiotics are exclusively phosphorylated at the 3'-OH hydroxyl, and the 4,5-disubstituted aminocyclitol antibiotics can be phosphorylated at both the 3'- and 5"-hydroxyls. The first phosphorylation can occur on either the 3'- or 5"-hydroxyl group of neomycin B or butirosin A. Initial phosphotransfer to the 3'-position predominates for butirosin while the 5"-OH is favored for neomycin. These results open the potential for the rational design of aminoglycoside kinase inhibitors based on functionalization of either the 6-aminohexose or the pentose rings of aminoglycoside antibiotics.


Assuntos
Enterococcus/enzimologia , Fosfotransferases (Aceptor do Grupo Álcool)/metabolismo , Staphylococcus/enzimologia , Aminoglicosídeos , Antibacterianos/química , Antibacterianos/farmacologia , Sequência de Carboidratos , Resistência Microbiana a Medicamentos , Canamicina Quinase , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Fosforilação , Espectrometria de Massa de Íon Secundário , Especificidade por Substrato
17.
Arch Intern Med ; 155(19): 2095-100, 1995 Oct 23.
Artigo em Inglês | MEDLINE | ID: mdl-7575069

RESUMO

BACKGROUND: Heparin administration by physicians can vary greatly, and this variance can result in ineffective anticoagulation and reduced effectiveness of treatment. OBJECTIVE: To examine the use of a heparin nomogram in two community hospitals to validate its effect on anticoagulation parameters and to determine its influence on length of hospital stay. METHODS: Prenomogram and postnomogram intervention in two community hospitals in Sudbury, Ontario. All patients who presented and were admitted to the hospitals between 1991 and 1994 with a confirmed primary diagnosis of deep vein thrombosis and/or pulmonary embolism were eligible for the study. A heparin nomogram was instituted in April 1993 for treatment of deep vein thrombophlebitis and pulmonary embolism in hospitalized patients. The study patients were designated as prenomogram or postnomogram. Anticoagulation parameters (time to therapeutic activated partial thromboplastin time), number of diagnostic tests, percentage of times within the therapeutic range, and length of hospital stay were recorded for both groups. RESULTS: A total of 326 patients were identified from the database; 163 (50%) met the inclusion criteria. Patients in both groups appeared to be similar. Adequate anticoagulation was achieved faster (17.9 hours postnomogram vs 48.8 hours prenomogram; P < .001) and remained subtherapeutic less frequently in the postnomogram group (number of activated partial thromboplastin time tests below the therapeutic window; 56% prenomogram vs 28% postnomogram; P < .001). There were no differences between the groups with respect to length of stay (11.3 days prenomogram vs 10.9 days postnomogram; P = .60). More activated partial thromboplastin time tests were ordered in the postnomogram group (15.6 postnomogram vs 12.7 prenomogram; P = .001); however, fewer prothrombin time tests were ordered in the postnomogram group. CONCLUSIONS: A heparin nomogram was successfully used in a community hospital without a structured hematology-thrombosis service. Therapeutic anticoagulation was achieved faster and maintained more frequently, with less logistical problems, with this protocol. However, additional measures may be required to reduce the length of hospital stay.


Assuntos
Anticoagulantes/administração & dosagem , Heparina/administração & dosagem , Adulto , Idoso , Esquema de Medicação , Quimioterapia Assistida por Computador , Feminino , Hospitais Comunitários , Humanos , Tempo de Internação , Masculino , Pessoa de Meia-Idade , Tempo de Tromboplastina Parcial , Embolia Pulmonar/tratamento farmacológico , Estudos Retrospectivos , Tromboflebite/tratamento farmacológico , Resultado do Tratamento
18.
Biochemistry ; 33(22): 6936-44, 1994 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-8204627

RESUMO

The aminoglycoside phosphotransferases (APHs) are responsible for the bacterial inactivation of many clinically useful aminoglycoside antibiotics. We report the characterization of an enterococcal enzyme, APH(3')-IIIa, which inactivates a broad spectrum of aminoglycosides by ATP-dependent O-phosphorylation. Overproduction of APH(3')-IIIa has permitted the isolation of 30-40 mg of pure protein/(L of cell culture). Purified APH(3')-IIIa is a mixture of monomer and dimer which is slowly converted to dimer only over time. Dimer could be dissociated into monomer by incubation with 2-mercaptoethanol, suggesting that dimerization is mediated by formation of disulfide bond(s). Both monomer and dimer show Km values in the low micromolar range for good substrates such as kanamycin and neomycin, and kcat values of 1-4 s-1. All aminoglycosides show substrate inhibition except amikacin and kanamycin B. Determination of minimum inhibitory concentrations indicates a positive correlation between antibiotic activity and kcat/Km, but not with Km or kcat. NMR analysis of phosphorylated kanamycin A has directly demonstrated regiospecific phosphoryl transfer to the 3'-hydroxyl of the 6-aminohexose ring of the antibiotic. Analysis of structure-activity relationships with a variety of aminoglycosides has revealed that the deoxystreptamine aminocyclitol ring plays a critical role in substrate binding. This information will form the basis for future design of inhibitors of APH(3')-IIIa.


Assuntos
Antibacterianos/metabolismo , Enterococcus/enzimologia , Fosfotransferases (Aceptor do Grupo Álcool)/metabolismo , Aminoglicosídeos , Antibacterianos/farmacologia , Sequência de Bases , Sequência de Carboidratos , Resistência Microbiana a Medicamentos/fisiologia , Escherichia coli/efeitos dos fármacos , Regulação Bacteriana da Expressão Gênica , Regulação Enzimológica da Expressão Gênica , Canamicina Quinase , Cinética , Dados de Sequência Molecular , Fosfotransferases (Aceptor do Grupo Álcool)/biossíntese , Fosfotransferases (Aceptor do Grupo Álcool)/isolamento & purificação , Proteínas Recombinantes/metabolismo , Especificidade por Substrato
19.
Am J Hum Genet ; 53(5): 973-86, 1993 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-8213840

RESUMO

Mucopolysaccharidosis type I (MPS-I) is an autosomal recessive genetic disease caused by a deficiency of the lysosomal glycosidase alpha-L-iduronidase. Hurler (severe), Scheie (mild), and Hurler/Scheie (intermediate) syndromes are clinical subtypes of MPS-I, but it is difficult to distinguish between these subtypes by biochemical measurements. Mutation analysis was undertaken to provide a molecular explanation for the clinical variation seen in MPS-I. Using chemical cleavage and direct PCR sequencing, we have defined four previously undescribed mutations for MPS-I (delG1702, 1060 + 2t-->c, R89Q, and 678-7g-->a). R89Q and 678-7g-->a were found to be present in 40% of Scheie syndrome alleles. Expression of R89Q demonstrated reduced stability and activity of the mutant protein. The deleterious effect of R89Q may be potentiated by a polymorphism (A361T) to produce an intermediate phenotype. 678-7g-->a was found to be a mild mutation, since it was present in an index Scheie syndrome patient in combination with a severe allele (W402X). This mutation appears to allow a very small amount of normal mRNA to be produced from the allele which is likely to be responsible for the mild clinical phenotype observed. Both the 5' and 3' splice site mutations (1060 + 2t-->c and 678-7g-->a, respectively) result in high proportions of mature mRNAs containing introns, which has not been observed for other splicing mutations. The frameshift mutation (delG1702) and the 5' splice site mutation (1060 + 2t-->c) are both thought to be associated with severe MPS-I. The identification of these MPS-I mutations begins to document the expected genetic heterogeneity in MPS-I and provides the first molecular explanations for the broad range of clinical phenotypes observed.


Assuntos
Iduronidase/genética , Mucopolissacaridose I/genética , Mutação , Animais , Sequência de Bases , Células CHO , Linhagem Celular , Cricetinae , DNA , Análise Mutacional de DNA , Feminino , Humanos , Masculino , Dados de Sequência Molecular , Mucopolissacaridose I/classificação , Mucopolissacaridose I/enzimologia , Fenótipo , Reação em Cadeia da Polimerase , Síndrome
20.
Pharm Res ; 10(2): 276-81, 1993 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-8456077

RESUMO

Gabapentin (1-(aminomethyl)cyclohexaneacetic acid) is a neuroprotective agent with antiepileptic properties. The structure is small (molecular weight less than 200), is zwitterionic, and resembles an amino acid with the exception that it does not contain a chiral carbon and the amino group is not alpha to the carboxylate functionality. Gabapentin is not metabolized by humans, and thus, the amount of gabapentin excreted by the renal route represents the fraction of dose absorbed. Clinical trials have reported dose-dependent bioavailabilities ranging from 73.8 +/- 18.3 to 35.7 +/- 18.3% when the dose was increased from 100 to 1600 mg. The permeability of gabapentin in the rat intestinal perfusion system was consistent with carrier-mediated absorption, i.e., a 75 to 80% decrease in permeability when the drug concentration was increased from 0.01 to 50 mM (0.46 +/- 0.05 to 0.12 +/- 0.04). Excellent agreement was obtained between the actual clinical values and the predicted values from in situ results for the fraction of dose absorbed calculated using the theoretically derived correlation, Fabs = 1 - exp(-2Peff) by Amidon et al. (Pharm. Res. 5:651-654, 1988). The permeability values obtained for gabapentin correspond to 67.4 and 30.2% of the dose absorbed at the low and high concentrations, respectively. In the everted rat intestinal ring system, gabapentin shared an inhibition profile similar to that of L-phenylalanine. Characteristics of gabapentin uptake included cross-inhibition with L-Phe, sensitivity to inhibition by L-Leu, stereoselectivity as evidenced by incomplete inhibition by D-Phe, and lack of effect by Gly.(ABSTRACT TRUNCATED AT 250 WORDS)


Assuntos
Acetatos/farmacocinética , Aminas , Anticonvulsivantes/farmacocinética , Ácidos Cicloexanocarboxílicos , Absorção Intestinal , Ácido gama-Aminobutírico , Acetatos/administração & dosagem , Acetatos/sangue , Animais , Anticonvulsivantes/administração & dosagem , Anticonvulsivantes/sangue , Gabapentina , Glicina/farmacologia , Humanos , Técnicas In Vitro , Absorção Intestinal/efeitos dos fármacos , Leucina/farmacologia , Masculino , Perfusão , Permeabilidade , Fenilalanina/farmacocinética , Ratos , Ratos Wistar
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