MatGel: A MATLAB program for quantitative analysis of 2D polyacrylamide electrophoresis (2D-PAGE) protein gel images.

Two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) is widely used in proteomics studies. Hundreds of proteins extracted from a biological sample can be separated and visualized on a 2D-PAGE gel. The interpretation of protein expression levels relies on the comparison of areas and intensities of the corresponding protein spots in 2D-PAGE gel images. However, determination of protein spot areas by the manual selection method is time-consuming and error-prone. The purpose of this research is to develop a highly automated program for the simultaneous detection and quantification of protein spots across a large number of 2D-PAGE protein gel images by using MATLAB image processing toolbox. This program will enhance the potential of using 2D-PAGE technique as a high throughput quantitative protein expression study tool. We developed MatGel, a simple and efficient program for protein spot area detection and intensity quantification from 2D-PAGE protein gel images. MatGel can detect and output the areas and mean intensities of corresponding protein spots across a large number of 2D-PAGE gel images simultaneously. Users also have options to adjust preferences at each step of image analysis. Basic knowledge with MATLAB programming language is required to run the program.•We developed MATLAB program MatGel to automate the determination of protein spots on 2D-PAGE protein gel images.•MatGel can analyze a large number of 2D-PAGE gel images simultaneously to minimize human errors.•MatGel is flexible and easy to use.

Synthesis and characterization of Ag0(NPs)/TiO2 nanocomposite: insight studies of triclosan removal from aqueous solutions.

Nanocomposite mesoporous Ag0(NPs)/TiO2 thin film materials were synthesized and assessed for its efficient application in the elimination of potentially important drug triclosan from aqueous solutions. A template synthesis using the polyethylene glycol was enabled to obtain Ag0(NPs)/TiO2 nanocomposite materials where zerovalent Ag was in situ doped to the titania network. The nanocomposite materials were characterized by the scanning electron microscope (SEM), energy dispersive X-ray spectroscopy (EDX), transmission electron microscope (TEM), EDX elemental mapping, X-ray diffraction (XRD) analyses and Brunauer-Emmett-Teller (BET) methods. Further, the diffuse reflectance spectroscopy (DRS) was introduced to estimate the band gap of these solids. The thin film materials were subjected to the remediation of water contaminated with triclosan using the UV-A light. The oxidative elimination of triclosan was demonstrated as a function of pH, concentration of triclosan and presence of several co-existing ions. Increase in pH (4.0-10.0) and triclosan concentrations (0.5-15.0 mg/L) had decreased significantly the percentage degradation of triclosan. The pseudo-first-order kinetics was shown in the degradation of triclosan and rate constant was significantly decreased with the increase in pollutant concentration (0.5-15.0 mg/L) and pH (4.0-10.0). The 1000 times presence of scavengers showed that •OH were, predominantly, caused the oxidation of triclosan. Moreover, multiple application of nanocomposite Ag0(NPs)/TiO2(B) revealed that the thin film was fairly intact since the photocatalytic efficiency of triclosan removal was almost unaffected.

Nanocomposite thin films Ag0(NP)/TiO2 in the efficient removal of micro-pollutants from aqueous solutions: A case study of tetracycline and sulfamethoxazole removal.

The aim of this communication is to synthesize novel Nanocomposite thin film materials (Ag0(NP)/TiO2) using the template process. Surface morphology of materials was obtained by the Scanning Electron Microscopy (SEM) and Transmission Electron Microscopy (TEM) analyses. The presence of doped Ag-nanoparticles was confirmed by the TEM images along with the SEM-EDX analyses. The Atomic Force Microscopic images were demonstrated the surface roughness and thickness of Nanocomposite thin films. X-ray diffraction analysis confirmed that TiO2 was predominantly present to its anatase mineral phase. The Fourier Transform Infra-red analysis conducted to obtain the functional groups present with the solid. The specific surface area and pore sizes of Nanocomposites were obtained by the BET (Brunauer, Emmett, and Teller) analysis. Further, the Nanocomposite thin film photocatalysts were successfully employed in the degradation of emerging micro-pollutants viz., the antibiotics tetracycline and sulfamethoxazole from aqueous solutions using less harmful UV-A light (λmax 330 nm). The effect of solution pH (pH 4.0-8.0) and pollutant concentrations (1.0 mg/L-20.0 mg/L (for tetracycline) and (0.5 mg/L-15.0 mg/L (for sulfamethoxazole)) was extensively studied in the photocatalytic removal of these antibiotics. A significant decrease in percentage of non-purgeable organic carbon removal indicated that the micro-pollutants was substantially mineralized by the photocatalytic treatment. The stability of thin film was assessed by the repeated use of Nanocomposite thin films and results were indicated that the degradation of tetracycline or sulfamethoxazole was almost unaffected at least for six cycles of photocatalytic operations. The presence of several cations and anions in the degradation of these antibiotics was studied. Additionally, the presence of 2-propanol and EDTA inhibited significantly the degradation of these micro-pollutants i.e., the percentage of degradation was decreased by 31.8 and 24.2% (for tetracycline) and 42.8 and 39.9% (for sulfamethoxazole), respectively. This indicated that the degradation of tetracycline or sulfamethoxazole was predominantly proceeded by the OH radicals; generated at the valance and conduction band of semiconductor. Similarly, the presence of sodium azide inhibited the percentage removal of these antibiotics.

Nanocomposite Au NP/TiO2 thin film in the efficient remediation of aqueous solutions contaminated with emerging micro-pollutants.

The present communication specifically aims to synthesize novel nanocomposite material Au NPs/TiO2 in a simple template process using the polyethylene glycol as filler media. The thin film of the nanocomposite material was characterized by the advanced analytical tools. The surface morphology was obtained by the scanning electron microscopic (SEM) and transmission electron microscopic (TEM) images of solids. Similarly, the surface topography and roughness of solid were obtained by the atomic force microscopic (AFM) image of thin film. X-ray diffraction (XRD) data enabled to confirm that the TiO2 was predominantly present with its anatase phase. The specific surface area and pore size of the solid were obtained using the N2 adsorption/desorption data. Nanocomposite Au NP/TiO2 thin film was employed in the photocatalytic removal of sulfamethoxazole and triclosan from aqueous solutions using less harmful UV-A light (λmax = 330 nm). Various physicochemical parametric studies enabled to deduce the mechanism involved in the degradation process. The degradation kinetics as a function of pH (pH 4.0-10.0) and micro-pollutant concentrations (0.5-15.0 mg/L) was extensively studied. The mineralization of these pollutants was obtained using the non-purgeable organic carbon (NPOC) data. The stability of thin film was assessed by the repeated operations, and presence of several co-existing ions simulates the studies to real matrix treatment. Further, the presence of scavengers enabled to pin point the radical-induced degradation of sulfamethoxazole and triclosan from aqueous solutions.