Comparison qPCR study for selecting a valid single copy gene for measuring absolute telomere length.

Telomere shortening is a well-known biomarker for biological aging. A previous review of the methods used to measure telomere length (TL) noted how challenging it is to compare results from different studies using diverse methodological techniques. The most commonly used high throughput method for measuring average TL is the quantitative PCR (qPCR) method, where there are two protocols available; the relative TL and the absolute TL (aTL) method. All qPCR methods have similarities in that they use two different primer sets to measure the telomere repeat sequence (TTAGGG)n and a single copy gene region to calculate the average TL, (T/S) ratio. The difference between the relative TL and the aTL assay lies with the introduction of duplex oligomer standards to identify TL in kilobase pairs rather than using the traditional relative TL, T/S ratio method. Problems were noted using 36B4 (RPLP0), which was originally used as a suitable single copy gene qPCR assay. A previous aTL publication attempted to replace the 36B4 (RPLP0) single copy gene using the Interferon beta 1 gene (IFNB1) but results showed a lack of agreement with the TL results when compared to the DNAmTL assay. Here, we compare the two single copy gene assays previously used for the aTL assay and offer an alternative IFNB1 single copy gene assay without non-specific priming amplification to provide more consistent diploid copy number determination and a more robust and reproducible assay for measuring absolute TL.

Household Food Insecurity, Hair Cortisol, and Adiposity Among Tsimane' Hunter-Forager-Horticulturalists in Bolivia.

OBJECTIVES: This study examined how household food insecurity (HFI) and chronic stress relate to adiposity among Tsimane' hunter-forager-horticulturalists in remote Bolivia with limited access to energy-dense processed foods that promote weight gain among industrialized populations. METHODS: Retrospective cross-sectional data on HFI (via the Household Food Insecurity Access Scale [HFIAS]), hair cortisol concentration (HCC), adiposity (BMI, body fat percentage [%BF]), and sociodemographics were collected from 171 men, 164 women, and 167 children. Linear mixed-effects models tested linear, quadratic, joint, and interactive relationships between adiposity measures and both the HFIAS score and HCC. RESULTS: Among children, each 3-point HFIAS score increase was associated with a 0.44-point higher %BF (SE = 0.22, P = 0.04). However, each 20% increase in HCC was associated with a -0.29-point difference in %BF (SE = 0.12, P = 0.01). Among men, a slight curvilinear relationship emerged between HFIAS and BMI. HFIAS and HCC were unrelated to adiposity measures among women. HCC did not modify relationships between HFIAS and adiposity in any subgroup. CONCLUSIONS: These findings from a remote, small-scale population suggest that positive associations between HFI and adiposity are not isolated to contexts of industrialized food environments and heavy reliance on processed foods. However, these dynamics and the role of stress appear to differ by sex and age group.

Analysis of trends in coronary artery bypass grafting and percutaneous coronary intervention rates in Washington state from 1987 to 2001.

To determine if the actual rate of coronary artery bypass grafting (CABG) has been decreasing in Washington state, CABG and percutaneous coronary intervention (PCI) procedure rates from 1987 to 2001 were age- and gender-adjusted and standardized to the year 2000 to normalize case rates for changes in population demographics. CABG rates remained stable through 1997, then decreased 19% from 1997 to 2001. From 1987 to 2001, PCI rates increased 128%. These changes occurred simultaneously with decentralization of cardiac surgical services.