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1.
Comp Funct Genomics ; 2(3): 124-42, 2001.
Artigo em Inglês | MEDLINE | ID: mdl-18628907

RESUMO

Using a hierarchical approach, 620 non-essential single-gene yeast deletants generated by EUROFAN I were systematically screened for cell-wall-related phenotypes. By analyzing for altered sensitivity to the presence of Calcofluor white or SDS in the growth medium, altered sensitivity to sonication, or abnormal morphology, 145 (23%) mutants showing at least one cell wall-related phenotype were selected. These were screened further to identify genes potentially involved in either the biosynthesis, remodeling or coupling of cell wall macromolecules or genes involved in the overall regulation of cell wall construction and to eliminate those genes with a more general, pleiotropic effect. Ninety percent of the mutants selected from the primary tests showed additional cell wall-related phenotypes. When extrapolated to the entire yeast genome, these data indicate that over 1200 genes may directly or indirectly affect cell wall formation and its regulation. Twenty-one mutants with altered levels of beta1,3-glucan synthase activity and five Calcofluor white-resistant mutants with altered levels of chitin synthase activities were found, indicating that the corresponding genes affect beta1,3-glucan or chitin synthesis. By selecting for increased levels of specific cell wall components in the growth medium, we identified 13 genes that are possibly implicated in different steps of cell wall assembly. Furthermore, 14 mutants showed a constitutive activation of the cell wall integrity pathway, suggesting that they participate in the modulation of the pathway either directly acting as signaling components or by triggering the Slt2-dependent compensatory mechanism. In conclusion, our screening approach represents a comprehensive functional analysis on a genomic scale of gene products involved in various aspects of fungal cell wall formation.

2.
Yeast ; 15(15): 1631-44, 1999 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-10572260

RESUMO

The YlEXG1 gene of Yarrowia lipolytica, encoding an exo-1, 3-beta-glucanase, was isolated by screening a genomic library with a DNA probe obtained by PCR amplification, using oligonucleotides designed according to conserved regions in the EXG1, EXG2 and SSG1 genes from Saccharomyces cerevisiae. YlEXG1 consists of a 1263 bp open reading frame encoding a protein of 421 amino acids with a calculated molecular weight of 48 209 Da. Northern blot analysis revealed a unique YlEXG1-specific transcript, 1.4 kb long. A putative pre(signal)-peptide of 15 amino acids is proposed at the N-terminal domain of the primary translation product. The deduced amino acid sequence shares a high degree of homology with exo-1, 3-beta-glucanases from other yeast species, including S. cerevisiae, Kluyveromyces lactis, Pichia angusta and Debaryomyces occidentalis. YlExg1p contains the invariant amino acid positions which have been shown to be important in the catalytic function of family 5 glycosyl hydrolases. Chromoblot analysis indicated that YlEXG1 is located on chromosome VI. Disruption of YlEXG1 did not result in a phenotype under laboratory conditions and did not prevent the yeast-hypha transition. The sequence data reported in this paper have been assigned EMBL Accession No. Z46872.


Assuntos
Saccharomycetales/genética , beta-Glucosidase/genética , Sequência de Aminoácidos , Sequência de Bases , Northern Blotting , Southern Blotting , Clonagem Molecular , Primers do DNA/química , DNA Fúngico/química , Glucana 1,3-beta-Glucosidase , Dados de Sequência Molecular , Mutagênese Insercional/genética , Filogenia , Plasmídeos/química , Reação em Cadeia da Polimerase , RNA Fúngico/química , Mapeamento por Restrição , Saccharomycetales/enzimologia , Análise de Sequência de DNA , beta-Glucosidase/análise , beta-Glucosidase/química
3.
Yeast ; 15(7): 615-23, 1999 May.
Artigo em Inglês | MEDLINE | ID: mdl-10341424

RESUMO

Using PCR-ligated long flanking homology cassettes, null alleles of six open reading frames (ORFs) from chromosome II have been created in Saccharomyces cerevisiae. Deletants were constructed in three genetic backgrounds: FY1679, W303 and CEN.PK2. Tetrad analysis of heterozygous deletants revealed that none of the ORFs is essential for vegetative growth. Basic phenotypic analysis of haploid deletants showed that deletion of the YBR283c ORF causes a slight growth defect at 30 degrees C and 37 degrees C on glycerol-complete, glucose-complete, and glucose-minimal media only in the FY1679 and W303 backgrounds. Transformation of these deletants with the corresponding cognate gene in a centromeric plasmid complements the defects. Deletion of the YBR287w ORF leads to poor growth on glucose-minimal medium at 15 degrees C in the FY 1679 background. None of the six ORFs seems to be involved in mating or sporulation.


Assuntos
Genes Fúngicos , Saccharomyces cerevisiae/genética , Alelos , Cromossomos Fúngicos/genética , Meios de Cultura , Deleção de Genes , Fases de Leitura Aberta/genética , Fenótipo , Plasmídeos , Mapeamento por Restrição , Saccharomyces cerevisiae/crescimento & desenvolvimento , Transformação Genética
4.
Yeast ; 15(1): 63-72, 1999 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-10028186

RESUMO

We describe here the construction of six deletion mutants and their basic phenotypic analysis in three different backgrounds. The six genes were disrupted in three diploid strains (FY1679, W303 and CEN.PK2) by the long flanking homology (LFH) method (Wach, 1996). Transformants were selected as geneticin (G418)-resistant colonies and correct integration of the kanMX4 cassette was checked by colony PCR. Following sporulation of the heterozygous diploids, tetrads were dissected and scored for segregation of G418-resistance and auxotrophic markers. One of the six ORFs (YNL158w) corresponds to an essential gene which has no homology with other genes present in the databases and has two predicted transmembrane domains. Growth tests performed on different media at 15 degrees C, 30 degrees C or 37 degrees C with haploid deletants of the five non-essential genes revealed no apparent phenotype in any of them.


Assuntos
Cromossomos Fúngicos/genética , Deleção de Genes , Genes Fúngicos , Saccharomyces cerevisiae/genética , Fenótipo , Plasmídeos , Reação em Cadeia da Polimerase/métodos , Mapeamento por Restrição , Saccharomyces cerevisiae/classificação , Saccharomyces cerevisiae/crescimento & desenvolvimento , Transformação Genética
5.
Yeast ; 15(2): 91-109, 1999 Jan 30.
Artigo em Inglês | MEDLINE | ID: mdl-10029988

RESUMO

The molecular cloning of 1,3-beta-glucanase-encoding genes from different yeast species was achieved by screening genomic libraries with DNA probes obtained by PCR-amplification using oligonucleotides designed according to conserved regions in the EXG1, EXG2 and SSG1 genes from Saccharomyces cerevisiae. The nucleotide sequence of the KlEXG1 (Kluyveromyces lactis), HpEXG1 (Hansenula polymorpha) and SoEXG1 (Schwanniomyces occidentalis) genes was determined. K1EXG1 consists of a 1287 bp open reading frame encoding a protein of 429 amino acids (49,815 Da). HpEXG1 specifies a 435-amino acid polypeptide (49,268 Da) which contains two potential N-glycosylation sites. SoEXG1 encodes a protein of 425 residues (49,132 Da) which contains one potential site for N-linked glycosylation. Expression in S. cerevisiae of KlEXG1, SoEXG1 or HpEXG1 under control of their native promoters resulted in the secretion of active 1,3-beta-glucanases. Disruption of KlEXG1 did not result in a phenotype under laboratory conditions. Comparison of the primary translation products encoded by KlEXG1, HpEXG1 and SoEXG1 with the previously characterized exo-1,3-beta-glucanases from S. cerevisiae and C. albicans reveals that enzymes with this type of specificity constitute a family of highly conserved proteins in yeasts. KlExg1p, HpExg1p and SoExg1p contain the invariant amino acid positions which have been shown to be important in the catalytic function of family 5 glycosyl hydrolases.


Assuntos
Clonagem Molecular , Genes Fúngicos , Leveduras/enzimologia , Leveduras/genética , beta-Glucosidase/genética , beta-Glucosidase/metabolismo , Sequência de Aminoácidos , Sequência de Bases , Northern Blotting , Deleção de Genes , Glucana 1,3-beta-Glucosidase , Kluyveromyces/enzimologia , Kluyveromyces/genética , Dados de Sequência Molecular , Mapeamento Físico do Cromossomo , Pichia/enzimologia , Pichia/genética , Plasmídeos/genética , Mapeamento por Restrição , Saccharomycetales/enzimologia , Saccharomycetales/genética , Análise de Sequência de DNA
6.
Yeast ; 15(2): 155-64, 1999 Jan 30.
Artigo em Inglês | MEDLINE | ID: mdl-10029994

RESUMO

In this report we describe the construction and basic phenotypic analysis of deletion mutants in six open reading frames (ORFs) of unknown function from the yeast Saccharomyces cerevisiae. Using the dominant kanMX marker and polymerase chain reaction (PCR) methods, deletion cassettes were constructed for five ORFs (YNL099c, YNL100w, YNL101w, YNL106c and YNL242w) located on chromosome XIV and one ORF (YOR109w) located on chromosome XV. The recovery of viable haploid deletant strains among the meiotic products of heterozygous deletants for each ORF demonstrated that none of the analysed ORFs was essential. With the exception of YNL242w, no alterations in growth characteristics or mating and sporulation efficiencies associated with deletion of the ORFs were observed. Homozygous diploid ynl242w delta cells obtained in three different genetic backgrounds were unable to sporulate, indicating that the product of this ORF is required for sporulation. Complementation of the sporulation defect by the cognate gene clone confirmed this observation. YNL106c and YOR109w are very similar and show strong sequence homology with a mammalian phosphatidylinositol-phosphate 5-phosphatase, synaptojanin, known to be involved in synaptic vesicle cycling. Strains bearing single and double deletions of YNL106c and YOR109w were seen to display abnormal vacuolar morphologies of varying degrees. Complementation tests indicated that YNL106c and YOR109w are redundant genes.


Assuntos
Deleção de Genes , Genes Fúngicos , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/fisiologia , Morfogênese , Fases de Leitura Aberta/genética , Saccharomyces cerevisiae/ultraestrutura , Esporos Fúngicos/fisiologia , Vacúolos/fisiologia , Vacúolos/ultraestrutura
7.
Mol Cell Biol ; 19(3): 2118-29, 1999 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-10022899

RESUMO

Meiosis in Saccharomyces cerevisiae is followed by encapsulation of haploid nuclei within multilayered spore walls. Formation of this spore-specific wall requires the coordinated activity of enzymes involved in the biosynthesis of its components. Completion of late events in the sporulation program, leading to spore wall formation, requires the SWM1 gene. SWM1 is expressed at low levels during vegetative growth but its transcription is strongly induced under sporulating conditions, with kinetics similar to those of middle sporulation-specific genes. Homozygous swm1Delta diploids proceed normally through both meiotic divisions but fail to produce mature asci. Consistent with this finding, swm1Delta mutant asci display enhanced sensitivity to enzymatic digestion and heat shock. Deletion of SWM1 specifically affects the expression of mid-late and late sporulation-specific genes. All of the phenotypes observed are similar to those found for the deletion of SPS1 or SMK1, two putative components of a sporulation-specific MAP kinase cascade. However, epistasis analyses indicate that Swm1p does not form part of the Sps1p-Smk1p-MAP kinase pathway. We propose that Swm1p, a nuclear protein, would participate in a different signal transduction pathway that is also required for the coordination of the biochemical and morphological events occurring during the last phase of the sporulation program.


Assuntos
Proteínas Fúngicas/genética , Proteínas Fúngicas/fisiologia , Genes Fúngicos , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/genética , Ciclossomo-Complexo Promotor de Anáfase , Núcleo Celular , Parede Celular/fisiologia , Regulação Fúngica da Expressão Gênica , Haploidia , Meiose , Saccharomyces cerevisiae/fisiologia , Esporos Fúngicos/fisiologia , Ubiquitina-Proteína Ligases
8.
Mol Cell Biol ; 17(8): 4474-89, 1997 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-9234705

RESUMO

In the yeast Saccharomyces cerevisiae, phosphorylation of translation initiation factor eIF2 by protein kinase GCN2 leads to increased translation of the transcriptional activator GCN4 in amino acid-starved cells. The GCN1 and GCN20 proteins are components of a protein complex required for the stimulation of GCN2 kinase activity under starvation conditions. GCN20 is a member of the ATP-binding cassette (ABC) family, most of the members of which function as membrane-bound transporters, raising the possibility that the GCN1/GCN20 complex regulates GCN2 indirectly as an amino acid transporter. At odds with this idea, indirect immunofluorescence revealed cytoplasmic localization of GCN1 and no obvious association with plasma or vacuolar membranes. In addition, a fraction of GCN1 and GCN20 cosedimented with polysomes and 80S ribosomes, and the ribosome association of GCN20 was largely dependent on GCN1. The C-terminal 84% of GCN20 containing the ABCs was found to be dispensable for complex formation with GCN1 and for the stimulation of GCN2 kinase function. Because ABCs provide the energy-coupling mechanism for ABC transporters, these results also contradict the idea that GCN20 regulates GCN2 as an amino acid transporter. The N-terminal 15 to 25% of GCN20, which is critically required for its regulatory function, was found to interact with an internal segment of GCN1 similar in sequence to translation elongation factor 3 (EF3). Based on these findings, we propose that GCN1 performs an EF3-related function in facilitating the activation of GCN2 by uncharged tRNA on translating ribosomes. The physical interaction between GCN20 and the EF3-like domain in GCN1 could allow for modulation of GCN1 activity, and the ABC domains in GCN20 may be involved in this regulatory function. A human homolog of GCN1 has been identified, and the portion of this protein most highly conserved with yeast GCN1 has sequence similarity to EF3. Thus, similar mechanisms for the detection of uncharged tRNA on translating ribosomes may operate in yeast and human cells.


Assuntos
Proteínas de Caenorhabditis elegans , Proteínas de Transporte/metabolismo , Proteínas de Ligação a DNA , Proteínas Fúngicas/metabolismo , Biossíntese de Proteínas/fisiologia , Proteínas Quinases/metabolismo , Proteínas Serina-Treonina Quinases/metabolismo , Ribossomos/metabolismo , Proteínas de Saccharomyces cerevisiae , Transportadores de Cassetes de Ligação de ATP , Trifosfato de Adenosina/metabolismo , Sequência de Aminoácidos , Proteínas de Transporte/genética , Membrana Celular/enzimologia , Sequência Conservada/genética , Citoplasma/enzimologia , Ativação Enzimática , Fator de Iniciação 2 em Eucariotos/metabolismo , Proteínas Fúngicas/genética , Histidina/metabolismo , Humanos , Dados de Sequência Molecular , Fatores de Alongamento de Peptídeos , Fosforilação , Polirribossomos/metabolismo , Proteínas Quinases/genética , Proteínas Recombinantes de Fusão/metabolismo , Ribossomos/enzimologia , Saccharomyces cerevisiae/enzimologia , Saccharomyces cerevisiae/genética , Deleção de Sequência , Homologia de Sequência de Aminoácidos , eIF-2 Quinase
9.
EMBO J ; 14(13): 3184-99, 1995 Jul 03.
Artigo em Inglês | MEDLINE | ID: mdl-7621831

RESUMO

GCN2 is a protein kinase that phosphorylates the alpha-subunit of translation initiation factor 2 (eIF-2) and thereby stimulates translation of GCN4 mRNA in amino acid-starved cells. We isolated a null mutation in a previously unidentified gene, GCN20, that suppresses the growth-inhibitory effect of eIF-2 alpha hyperphosphorylation catalyzed by mutationally activated forms of GCN2. The deletion of GCN20 in otherwise wild-type strains impairs derepression of GCN4 translation and reduces the level of eIF-2 alpha phosphorylation in vivo, showing that GCN20 is a positive effector of GCN2 kinase function. In accordance with this conclusion, GCN20 was co-immunoprecipitated from cell extracts with GCN1, another factor required to activate GCN2, and the two proteins interacted in the yeast two-hybrid system. We conclude that GCN1 and GCN20 are components of a protein complex that couples the kinase activity of GCN2 to the availability of amino acids. GCN20 is a member of the ATP binding cassette (ABC) family of proteins and is closely related to ABC proteins identified in Caenorhabditis elegans, rice and humans, suggesting that the function of GCN20 may be conserved among diverse eukaryotic organisms.


Assuntos
Proteínas de Caenorhabditis elegans/metabolismo , Proteínas de Transporte/genética , Ativação Enzimática/genética , Proteínas Fúngicas/metabolismo , Proteínas Quinases/metabolismo , Proteínas Serina-Treonina Quinases/metabolismo , Receptores Purinérgicos P2/metabolismo , Proteínas de Saccharomyces cerevisiae , Transportadores de Cassetes de Ligação de ATP , Sequência de Aminoácidos , Proteínas de Caenorhabditis elegans/genética , Proteínas de Transporte/química , Proteínas de Transporte/metabolismo , Mapeamento Cromossômico , Sequência Conservada , Proteínas de Ligação a DNA/genética , Proteínas de Ligação a DNA/metabolismo , Proteínas Fúngicas/genética , Regulação Fúngica da Expressão Gênica , Genes Fúngicos/fisiologia , Genes Reguladores , Humanos , Modelos Genéticos , Dados de Sequência Molecular , Fatores de Alongamento de Peptídeos , Fatores de Iniciação de Peptídeos/genética , Fatores de Iniciação de Peptídeos/metabolismo , Fosforilação , Biossíntese de Proteínas , Conformação Proteica , Proteínas Quinases/genética , Proteínas Serina-Treonina Quinases/genética , Proteínas de Ligação a RNA , Receptores Purinérgicos P2/química , Receptores Purinérgicos P2/genética , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Alinhamento de Sequência , Deleção de Sequência , Transativadores , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo , Ativação Transcricional , eIF-2 Quinase
10.
Genes Dev ; 9(14): 1781-96, 1995 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-7542616

RESUMO

GCN4 mRNA is translated by a reinitiation mechanism involving four short upstream open reading frames (uORFs) in its leader sequence. Decreasing the activity of eukaryotic initiation factor-2 (eIF-2) by phosphorylation inhibits general translation in yeast but stimulates GCN4 expression by allowing ribosomes to scan past the uORFs and reinitiate at GCN4 instead. GCD10 was first identified genetically as a translational repressor of GCN4. We show here that GCD10 is an essential protein of 54.6 kD that is required in vivo for the initiation of total protein synthesis. GCD10 binds RNA in vitro and we present strong biochemical evidence that it is identical to the RNA-binding subunit of yeast initiation factor-3 (eIF-3). eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. We suggest that gcd10 mutations decrease the ability of eIF-3 to stimulate binding of eIF-2/GTP/Met-tRNA(iMet) ternary complexes to small ribosomal subunits in vivo. This would explain why mutations in eIF-3 mimic eIF-2 alpha phosphorylation in allowing ribosomes to bypass the uORFs and reinitiate at GCN4. Our results indicate that GCN4 expression provides a sensitive in vivo assay for the function of eIF-3 in initiation complex formation.


Assuntos
Proteínas de Ligação a DNA , Proteínas Fúngicas/genética , Fatores de Iniciação de Peptídeos/genética , Proteínas Quinases/genética , RNA/metabolismo , Proteínas de Saccharomyces cerevisiae , Sequência de Aminoácidos , Sítios de Ligação/genética , Mapeamento Cromossômico , Clonagem Molecular , Fator de Iniciação 3 em Eucariotos , Proteínas Fúngicas/química , Proteínas Fúngicas/metabolismo , Genes Fúngicos , Modelos Genéticos , Dados de Sequência Molecular , Mutação , Fases de Leitura Aberta , Fatores de Iniciação de Peptídeos/química , Fatores de Iniciação de Peptídeos/metabolismo , Biossíntese de Proteínas , Conformação Proteica , Proteínas Quinases/química , Proteínas Quinases/metabolismo , Proteínas Repressoras/química , Proteínas Repressoras/genética , Proteínas Repressoras/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo
11.
Mol Cell Biol ; 14(12): 7920-32, 1994 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-7969132

RESUMO

GCN2 is a protein kinase that stimulates translation of GCN4 mRNA in amino acid-starved cells by phosphorylating the alpha subunit of translation initiation factor 2 (eIL-2). We isolated multicopy plasmids that overcome the defective derepression of GCN4 and its target genes caused by the leaky mutation gcn2-507. One class of plasmids contained tRNA(His) genes and conferred efficient suppression only when cells were starved for histidine; these plasmids suppressed a gcn2 deletion much less efficiently than they suppressed gcn2-507. This finding indicates that the reduction in GCN4 expression caused by gcn2-507 can be overcome by elevating tRNA(His) expression under conditions in which the excess tRNA cannot be fully aminoacylated. The second class of suppressor plasmids all carried the same gene encoding a mutant form of tRNA(Val) (AAC) with an A-to-G transition at the 3' encoded nucleotide, a mutation shown previously to reduce aminoacylation of tRNA(Val) in vitro. In contrast to the wild-type tRNA(His) genes, the mutant tRNA(Val) gene efficiently suppressed a gcn2 deletion, and this suppression was independent of the phosphorylation site on eIF-2 alpha (Ser-51). Overexpression of the mutant tRNA(Val) did, however, stimulate GCN4 expression at the translational level. We propose that the multicopy mutant tRNA(Val) construct leads to an accumulation of uncharged tRNA(Val) that derepresses GCN4 translation through a pathway that does not involve GCN2 or eIF-2 alpha phosphorylation. This GCN2-independent pathway was also stimulated to a lesser extent by the multicopy tRNA(His) constructs in histidine-deprived cells. Because the mutant tRNA(Val) exacerbated the slow-growth phenotype associated with eIF-2 alpha hyperphosphorylation by an activated GCN2c kinase, we suggest that the GCN2-independent derepression mechanism involves down-regulation of eIF-2 activity.


Assuntos
Proteínas de Ligação a DNA , Proteínas Fúngicas/genética , Regulação Fúngica da Expressão Gênica , Proteínas Quinases/genética , RNA de Transferência de Histidina/genética , RNA de Transferência de Valina/genética , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/genética , Fator de Iniciação 2 em Eucariotos/metabolismo , Genes Fúngicos , Genes Supressores , Biossíntese de Proteínas , RNA Fúngico/genética , Aminoacilação de RNA de Transferência
12.
Mol Cell Biol ; 14(5): 3208-22, 1994 May.
Artigo em Inglês | MEDLINE | ID: mdl-8164676

RESUMO

Phosphorylation of the alpha subunit of eukaryotic translation initiation factor 2 (eIF-2 alpha) impairs translation initiation by inhibiting the guanine nucleotide exchange factor for eIF-2, known as eIF-2B. In Saccharomyces cerevisiae, phosphorylation of eIF-2 alpha by the protein kinase GCN2 specifically stimulates translation of GCN4 mRNA in addition to reducing general protein synthesis. We isolated mutations in several unlinked genes that suppress the growth-inhibitory effect of eIF-2 alpha phosphorylation catalyzed by mutationally activated forms of GCN2. These suppressor mutations, affecting eIF-2 alpha and the essential subunits of eIF-2B encoded by GCD7 and GCD2, do not reduce the level of eIF-2 alpha phosphorylation in cells expressing the activated GCN2c kinase. Four GCD7 suppressors were shown to reduce the derepression of GCN4 translation in cells containing wild-type GCN2 under starvation conditions or in GCN2c strains. A fifth GCD7 allele, constructed in vitro by combining two of the GCD7 suppressors mutations, completely impaired the derepression of GCN4 translation, a phenotype characteristic of deletions in GCN1, GCN2, or GCN3. This double GCD7 mutation also completely suppressed the lethal effect of expressing the mammalian eIF-2 alpha kinase dsRNA-PK in yeast cells, showing that the translational machinery had been rendered completely insensitive to phosphorylated eIF-2. None of the GCD7 mutations had any detrimental effect on cell growth under nonstarvation conditions, suggesting that recycling of eIF-2 occurs efficiently in the suppressor strains. We propose that GCD7 and GCD2 play important roles in the regulatory interaction between eIF-2 and eIF-2B and that the suppressor mutations we isolated in these genes decrease the susceptibility of eIF-2B to the inhibitory effects of phosphorylated eIF-2 without impairing the essential catalytic function of eIF-2B in translation initiation.


Assuntos
Fator de Iniciação 2B em Eucariotos , Fator de Iniciação 2 em Eucariotos/metabolismo , Proteínas Fúngicas/metabolismo , Regulação Fúngica da Expressão Gênica , Genes Fúngicos , Genes Supressores , Iniciação Traducional da Cadeia Peptídica , Proteínas/metabolismo , Proteínas Repressoras/metabolismo , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/metabolismo , Alelos , Sequência de Aminoácidos , Animais , Sequência de Bases , Primers do DNA , Proteínas Fúngicas/genética , Deleção de Genes , Genótipo , Fatores de Troca do Nucleotídeo Guanina , Substâncias Macromoleculares , Mamíferos , Dados de Sequência Molecular , Mutagênese , Fosforilação , Plasmídeos , Reação em Cadeia da Polimerase , Biossíntese de Proteínas , Proteínas/genética , Proteínas Repressoras/genética , Saccharomyces cerevisiae/genética , Homologia de Sequência de Aminoácidos , Supressão Genética
13.
Proc Natl Acad Sci U S A ; 90(15): 7215-9, 1993 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-8102207

RESUMO

Phosphorylation of eIF-2 alpha in Saccharomyces cerevisiae by the protein kinase GCN2 leads to inhibition of general translation initiation and a specific increase in translation of GCN4 mRNA. We isolated mutations in the eIF-2 alpha structural gene that do not affect the growth rate of wild-type yeast but which suppress the toxic effects of eIF-2 alpha hyperphosphorylation catalyzed by mutationally activated forms of GCN2. These eIF-2 alpha mutations also impair translational derepression of GCN4 in strains expressing wild-type GCN2 protein. All four mutations alter single amino acids within 40 residues of the phosphorylation site in eIF-2 alpha; however, three alleles do not decrease the level of eIF-2 alpha phosphorylation. We propose that these mutations alter the interaction between eIF-2 and its recycling factor eukaryotic translation initiation factor 2B (eIF-2B) in a way that diminishes the inhibitory effect of phosphorylated eIF-2 on the essential function of eIF-2B in translation initiation. These mutations may identify a region in eIF-2 alpha that participates directly in a physical interaction with the GCN3 subunit of eIF-2B.


Assuntos
Fator de Iniciação 2 em Eucariotos/metabolismo , Iniciação Traducional da Cadeia Peptídica , Saccharomyces cerevisiae/genética , Sequência de Aminoácidos , Sequência de Bases , Fator de Iniciação 2 em Eucariotos/química , Regulação Fúngica da Expressão Gênica , Genes Supressores , Fatores de Troca do Nucleotídeo Guanina , Dados de Sequência Molecular , Oligodesoxirribonucleotídeos/química , Fosforilação , Proteínas Serina-Treonina Quinases/metabolismo , Proteínas/metabolismo , Relação Estrutura-Atividade , eIF-2 Quinase
14.
J Bacteriol ; 175(12): 3823-37, 1993 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-8509335

RESUMO

In Saccharomyces cerevisiae, the meiotic process is accompanied by a large increase in 1,3-beta-glucan-degradative activity. The molecular cloning of the gene (SSG1) encoding a sporulation-specific exo-1,3-beta-glucanase was achieved by screening a genomic library with a DNA probe obtained by polymerase chain reaction amplification using synthetic oligonucleotides designed according to the nucleotide sequence predicted from the amino-terminal region of the purified protein. DNA sequencing indicates that the SSG1 gene specifies a 445-amino-acid polypeptide (calculated molecular mass, 51.8 kDa) showing extensive similarity to the extracellular exo-1,3-beta-glucanases encoded by the EXG1 gene (C. R. Vazquez de Aldana, J. Correa, P. San Segundo, A. Bueno, A. R. Nebreda, E. Mendez, and F. del Rey, Gene 97:173-182, 1991). The N-terminal domain of the putative precursor is a very hydrophobic segment with structural features resembling those of signal peptides of secreted proteins. Northern (RNA) analysis reveals a unique SSG1-specific transcript, 1.7 kb long, which can be detected only in sporulating diploids (MATa/MAT alpha) but does not appear in vegetatively growing cells or in nonsporulating diploids (MAT alpha/MAT alpha) when incubated under nitrogen starvation conditions. The meiotic time course of SSG1 induction indicates that the gene is transcribed only in the late stages of the process, beginning at the time of meiosis I and reaching a maximum during spore formation. Homozygous ssg1/ssg1 mutant diploids are able to complete sporulation, although with a significant delay in the appearance of mature asci.


Assuntos
Genes Fúngicos , Saccharomyces cerevisiae/genética , beta-Glucosidase/genética , Sequência de Aminoácidos , Sequência de Bases , Diferenciação Celular , Clonagem Molecular , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Glucana 1,3-beta-Glucosidase , Meiose , Dados de Sequência Molecular , Mutagênese Insercional , Oligodesoxirribonucleotídeos/química , Reação em Cadeia da Polimerase , Mapeamento por Restrição , Alinhamento de Sequência , Deleção de Sequência , Solubilidade , Esporos Fúngicos/enzimologia
15.
Mol Cell Biol ; 12(12): 5801-15, 1992 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-1448107

RESUMO

The protein kinase GCN2 stimulates expression of the yeast transcriptional activator GCN4 at the translational level by phosphorylating the alpha subunit of translation initiation factor 2 (eIF-2 alpha) in amino acid-starved cells. Phosphorylation of eIF-2 alpha reduces its activity, allowing ribosomes to bypass short open reading frames present in the GCN4 mRNA leader and initiate translation at the GCN4 start codon. We describe here 17 dominant GCN2 mutations that lead to derepression of GCN4 expression in the absence of amino acid starvation. Seven of these GCN2c alleles map in the protein kinase moiety, and two in this group alter the presumed ATP-binding domain, suggesting that ATP binding is a regulated aspect of GCN2 function. Six GCN2c alleles map in a region related to histidyl-tRNA synthetases, and two in this group alter a sequence motif conserved among class II aminoacyl-tRNA synthetases that directly interacts with the acceptor stem of tRNA. These results support the idea that GCN2 kinase function is activated under starvation conditions by binding uncharged tRNA to the domain related to histidyl-tRNA synthetase. The remaining GCN2c alleles map at the extreme C terminus, a domain required for ribosome association of the protein. Representative mutations in each domain were shown to depend on the phosphorylation site in eIF-2 alpha for their effects on GCN4 expression and to increase the level of eIF-2 alpha phosphorylation in the absence of amino acid starvation. Synthetic GCN2c double mutations show greater derepression of GCN4 expression than the parental single mutations, and they have a slow-growth phenotype that we attribute to inhibition of general translation initiation. The phenotypes of the GCN2c alleles are dependent on GCN1 and GCN3, indicating that these two positive regulators of GCN4 expression mediate the inhibitory effects on translation initiation associated with activation of the yeast eIF-2 alpha kinase GCN2.


Assuntos
Proteínas de Ligação a DNA , Histidina-tRNA Ligase/genética , Proteínas Quinases/genética , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/genética , Alelos , Sequência de Aminoácidos , Clonagem Molecular , Fator de Iniciação 2B em Eucariotos , Proteínas Fúngicas/metabolismo , Genes Fúngicos , Histidina-tRNA Ligase/metabolismo , Dados de Sequência Molecular , Mutação , Fatores de Alongamento de Peptídeos , Proteínas Quinases/química , Proteínas Quinases/metabolismo , Proteínas Serina-Treonina Quinases , Estrutura Secundária de Proteína , Saccharomyces cerevisiae/enzimologia , Homologia de Sequência de Aminoácidos , Fatores de Transcrição/metabolismo
16.
Curr Genet ; 22(4): 283-8, 1992 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-1394509

RESUMO

The map position of three 1,3-beta-glucanase-encoding genes in S. cerevisiae has been determined following conventional meiotic and mitotic mapping combined with recombinant DNA techniques. EXG1, EXG2 and SSG1 were localized to chromosomes XII, IV and XV, respectively, by hybridizing the cloned genes to Southern blots of chromosomes separated by pulsed-field gel electrophoresis, in conjunction with the rad52-1-dependent chromosome-loss mapping technique. Meiotic tetrad analyses further localized the EXG1 gene 6.1 centimorgans centromere-proximal to CDC25 on the right arm of chromosome XII. EXG2 was positioned between LYS4 and GCN2 on the right arm of chromosome IV, at distances of 6.2 centimorgans from LYS4 and 4.9 centimorgans from GCN2. Finally, the SSG1 locus mapped on the right arm of chromosome XV, about 8.2 centimorgans to the centromere-proximal side of HIS3.


Assuntos
Mapeamento Cromossômico/métodos , Proteínas Fúngicas/genética , Genes Fúngicos , Saccharomyces cerevisiae/genética , beta-Glucosidase/genética , Cromossomos Fúngicos , Clonagem Molecular , Ligação Genética , Glucana 1,3-beta-Glucosidase , Meiose
17.
Gene ; 97(2): 173-82, 1991 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-1900250

RESUMO

The nucleotide (nt) sequence of the Saccharomyces cerevisiae gene (EXG1) encoding extracellular exo-1,3-beta-glucanases (EXG) I and II was determined. An open reading frame of 1344 bp codes for a 448-amino acid (aa) polypeptide, with a calculated Mr of 51,307, which contains two potential N-glycosylation sites. The EXG1 DNA hybridizes to a 1.7-kb transcript whose 5' end maps to a position 98 bp upstream from the site of initiation of protein synthesis. Comparison of the N-terminal aa sequence deduced from the nt sequence with that of the purified EXGII revealed the existence of an extra 40-aa peptide in the precursor protein containing a Lys-Arg peptidase-processing site at the junction with the mature, extracellular form. The N-terminal region of the putative precursor is a very hydrophobic segment with structural features resembling those of signal peptides of secreted proteins. The Mr of the mature EXG polypeptide deduced from the nt sequence is 46,385. The 5'- and 3'-flanking regions of the EXG1 gene have structural features in common with other yeast genes.


Assuntos
Genes Fúngicos , Saccharomyces cerevisiae/genética , beta-Glucosidase/genética , Sequência de Aminoácidos , Sequência de Bases , Códon , Glucana 1,3-beta-Glucosidase , Glicosilação , Dados de Sequência Molecular , Fases de Leitura Aberta , Biossíntese de Proteínas , Processamento de Proteína Pós-Traducional , Mapeamento por Restrição , Saccharomyces cerevisiae/enzimologia , Homologia de Sequência do Ácido Nucleico , Transcrição Gênica , beta-Glucosidase/biossíntese , beta-Glucosidase/metabolismo
19.
J Bacteriol ; 172(4): 2160-7, 1990 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-2180919

RESUMO

The synthesis and secretion of a 1,3-1,4-beta-D-glucanase were studied in different strains of Escherichia coli transformed with plasmids carrying the Bacillus circulans WL-12 1,3-1,4-beta-D-glucanase structural gene. This gene (named BGC) is contained within a 1.9-kilobase BamHI-HindIII fragment and directs the synthesis in E. coli of an enzyme that specifically degrades lichenan. Only one active form of the enzyme was found when the gene was expressed in different E. coli strains. The electrophoretic pattern of this protein showed a molecular weight that was approximately the same as that of the mature beta-glucanase secreted from B. circulans WL-12, suggesting that the processing of this protein may be similar in both species. As deduced from maxicell experiments, the Bacillus parental promoter directs the synthesis in E. coli. Pulse-chase experiments showed that the protein may be cotranslationally processed.


Assuntos
Bacillus/genética , Escherichia coli/genética , Glicosídeo Hidrolases/genética , Bacillus/enzimologia , Southern Blotting , DNA Bacteriano/genética , DNA Bacteriano/isolamento & purificação , Escherichia coli/enzimologia , Genes Bacterianos , Glicosídeo Hidrolases/biossíntese , Glicosídeo Hidrolases/isolamento & purificação , Plasmídeos , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/isolamento & purificação , Mapeamento por Restrição
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