Factors affecting the relative abundance in an overfished stock: red grouper (Epinephelus morio) in the Southeastern Gulf of Mexico.

The most important fisheries are recording catches below their historical averages despite increased effort. This level of overfishing is worrying and requires the establishment of feasible and precise measures to prevent a continuing decrease in biomass. Determining the factors that lead to changes in the abundance and distribution of overfished resources would allow us to identify the strengths and weaknesses of management schemes; this approach would also make it possible to estimate more accurate parameters for their evaluation. We hypothesize that environmental, temporal, spatial, and operational components contribute to the variation in the relative abundance. Thus, we analyzed the red grouper fishery, the most important demersal fishery in the southeastern Gulf of Mexico (SGM); it is locally known as escama. We employed the catch per unit effort (CPUE) as an index of relative abundance recorded by the semi-industrial fleet (kilogram per effective fishing day) and the small-scale fleet (kilogram per effective fishing hour) during the overexploitation phase (from 1996 to 2019). We fitted several variables of the components using generalized additive models (GAM) and used multi-model inference to determine the best GAM for each fleet. For both fleets, the operational and temporal components (fishing gear and year) have had a greater impact on the distribution and abundance of red grouper in the SGM than the spatial and environmental components (the place of origin and sea surface temperature). These findings encourage the exploration of métier schemes for more efficient fishery management. In addition, we have identified several strategies that would support the recovery of the resource, such as restricting fishing in the quadrants located to the northeast or regulating scuba diving. We recommend that in the future, researchers use the indices we have generated in the present study to evaluate the red grouper fishery.

Negative effect of ectoparasite burdens on the condition factor from farmed tilapia Oreochromis niloticus in the Yucatan, Mexico.

Nile tilapia (Oreochromis niloticus Linnaeus, 1758) is one of the most important aquaculture species in the world, and, when introduced, the ectoparasites of Nile tilapia have followed. Currently, farmers worldwide consider these ectoparasites harmless, but intensities can reach up to 1000 individuals per fish in tropical regions. In this cross-sectional study, we used the condition factor to estimate the potential effects of low (45 ± 31 ectoparasites per fish) and high (295 ± 191) ectoparasitic burdens across 28 tilapia farms and included the analysis of the effects of 44 management and environmental variable from the farms. A stepwise procedure in a multiple linear regression analysis retained the variables that explained the most variance, which was the ectoparasitic burden (57 %). We found significantly higher values of the condition factor in Nile tilapia with low ectoparasitic burden than in those with high ectoparasitic burden. Additionally, Nile tilapia with a high ectoparasitic burden weighed less than half than those with a low burden (102 ± 105 g versus 230 ± 128 g, respectively). We also found a significant non-linear, negative relationship between the ectoparasitic burden and the relative condition factor values per fish, which was most likely due to an increase in gill mucus caused by the ectoparasitic burden that depleted energy in the Nile tilapia. The economic consequence of the ectoparasitic burden translated roughly into a loss up to 12-15 % in profit margin per ton of fish, based on the price of Nile tilapia in the Mexican market.

Polycyclic aromatic hydrocarbons in the cestode Oncomegas wageneri parasite of Mexican flounder Cyclopsetta chittendeni.

The concentrations of polycyclic aromatic hydrocarbon metabolites (PAHm) and their bioconcentration factors (BCF) were determined in the larval stages of the cestode Oncomegas wageneri, recovered from the intestine of the Mexican flounder Cyclopsetta chittendeni, in the southern Gulf of Mexico. The PAHm concentrations in O. wageneri were measured using fixed-wavelength fluorescence spectrometry and compared with PAHm concentrations in host bile. Oncomegas wageneri PAHm concentrations were markedly higher than those in host tissues. The highest BCF values were obtained for 1-hydroxypyrene (OHP) and benzo(a)pyrene (BaP). Using a General Linear Model, a significant negative relationship was found between O. wageneri PAHm concentrations (as response variable) and the number of O. wageneri and oil well proximity. Low BCF values and PAHm concentrations in C. chittendeni correlated positively with O. wageneri PAHm concentrations. In contrast, high BCF values for PAHm concentrations in C. chittendeni had a negative association with O. wageneri PAHm concentrations. This study provides the first evidence of the presence of PAHm in intestinal larval cestodes of marine flatfishes, demonstrating levels of PAHm that were higher than levels in their hosts.

Factors affecting relative abundance of low-mobility fishing resources: spiny lobster in the Galapagos Marine Reserve.

Management of low-mobility or benthic fisheries is a difficult task because variation in the spatial distribution and population dynamics of the resources make the monitoring and assessment of these fisheries challenging. We assumed that environmental, spatial, and temporal factors can contribute to the variability of the relative abundance of such species; we used Generalized Additive Models for Location Scale and Shape (GAMLSS) to test this hypothesis using as a case study the lobster fishery (targeting two species) in the Galapagos Marine Reserve, Ecuador. We gathered data on each of the two species of lobster on a monthly basis over seven years, including: (a) onboard observers' records of catch data, fishing effort, and ground location by trip, and (b) data from interviews undertaken with fishers at their arrival to port, recording the same type of information as obtained from onboard observers. We use this information to analyze the effect of the measured variables and to standardize the Catch per Unit Effort (CPUE) in each case, using the GAMLSS. For both species, the temperature, region, fishing schedule, month, distance, and the monitoring system were significant variables of the selected models associated with the variability of the catch rate. For Panulirus penicillatus, CPUE was higher at night than during the day, and for Panulirus gracilis it was higher during the day. Increased temperature resulted in a decrease of CPUE values. It was evident that temporal, spatial scales and monitoring system can influence the variability of this indicator. We contend that the identification of drivers of change of relative abundance in low-mobility species can help to support the development of monitoring and assessment programs for this type of fisheries.

Metazoan parasite infracommunities of the dusky flounder (Syacium papillosum) as bioindicators of environmental conditions in the continental shelf of the Yucatan Peninsula, Mexico.

BACKGROUND: We assessed metrics of the metazoan parasite infracommunities of the dusky flounder (Syacium papillosum) as indicators of aquatic environmental health of the Yucatan Shelf (YS) prior to oil extraction. We sampled the dusky flounder and its parasites along the YS, mostly during the 2015 north wind season (November-April). Our aims were: (i) to determine whether the parasite infracommunity metrics of S. papillosum exhibit significant differences among YS subregions; (ii) to determine whether the probability of the occurrence of its parasite species and individuals were affected by environmental variables, nutrients, heavy metals and hydrocarbons at the seascape level; and (iii) to determine whether there were statistical differences between the parasite infracommunity metrics of S. papillosum from YS and those of Syacium gunteri from the Campeche Sound. Multivariate statistical analyses and generalised additive models (GAMs) were used to examine the potential statistical associations between the contaminants, environmental variables and parasite community metrics, and the maximum entropy algorithm (MaxEnt) was used to characterise the habitat's suitability for the parasite's probability of occurrence. RESULTS: We recovered 48 metazoan parasite species from 127 S. papillosum, with larval cestodes and digeneans being the most numerically-dominant. Multivariate analyses showed significant differences in parasite infracommunity metrics among Western YS, Mid YS and Caribbean subregions, with the latter being the richest in species but not in individuals. The GAM and MaxEnt results indicated a negative effect of top predators (e.g. sharks and rays) removal on parasite metrics. The parasite infracommunities of S. papillosum were twice as rich in the number of species and individuals as those reported for S. gunteri from the Campeche Sound. CONCLUSIONS: The significant differences among subregions in parasite metrics were apparently due to the interruption of the Yucatan current during the north wind season. The fishing of top predators in combination with an influx of nutrients and hydrocarbons in low concentrations coincides with an increase in larval cestodes and digeneans in S. papillosum. The dusky flounder inhabits a region (YS) with a larger number of metazoan parasite species compared with those available for S. gunteri in the Campeche Sound, suggesting better environmental conditions for transmission in the YS.

Natural mortality estimates throughout the life history of the sea cucumber Isostichopus Badionotus (Holothuroidea: Aspidochirotida).

The Natural Mortality coefficient (M) is a key parameter for stock assessments. The need to establish age-specific natural mortality coefficients is widely recognized because M decreases rapidly over the early stages of the life cycle until it reaches a stable M value around the age-at-maturity. The aim of this study was to estimate M during the life cycle of the sea cucumber Isostichopus badionotus, a species under heavy fishing exploitation in the Caribbean Sea and the Gulf of Mexico. Coefficients M at age were estimated using two models: The Gnomonic Interval Model (GIM) and the Chen & Watanabe model. Two different scenarios were simulated considering early and late age-at-maturity. Estimated M values using the GIM model for the early maturity scenario were 2.15 to 2.35 year-1 (interquartile range) for the juvenile stage and 0.39 to 0.43 year-1 for the adult stage; for the late maturity scenario were 0.65 to 0.71 year-1 for the juvenile stage and 0.68 to 0.74 year-1 for the adult stage. The Chen & Watanabe model M estimates for juvenile stage were between 0.85 and 2.23 year-1 and 0.39 and 2.23 year-1 for the early and late maturity scenarios respectively; for adult stage were between 0.97 and 0.21 year-1 and 0.62 and 0.43 year-1 respectively. The GIM estimated high natural mortality rates during larval stages. These estimates provided a higher level of certainty for the population models to more effectively manage a fishery and improve stock assessments.

Geographical distribution of protozoan and metazoan parasites of farmed Nile tilapia Oreochromis niloticus (L.) (Perciformes: Cichlidae) in Yucatán, México.

BACKGROUND: In Yucatán State, southern México, as in many other parts of the world where tilapia has been introduced for aquaculture, the deficient application of management measures has led to the establishment of non-native parasites. The aims of this study were to describe the geographical distribution of protozoan and helminth parasites of farmed Nile tilapia Oreochromis niloticus (L.) throughout the Yucatán and to examine the potential statistical associations of the prevalence and mean abundance of these parasites with management and environmental variables. METHODS: All 29 Nile tilapia farms currently operating in Yucatán were surveyed. Maps were created to describe the geographical location of the parasites infecting Nile tilapia at each farm. We evaluated the statistical associations of management and environmental variables with the mean abundance values of each parasite species using a multivariate redundancy analysis (RDA) and generalized additive models (GAM). We also used Ripley's K to determine whether there were significant clusters of the mean abundance of particular parasite species in specific regions of the Yucatán State. RESULTS: A total of 580 O. niloticus were examined, and 11 species of parasites were recorded. Cichlidogyrus sclerosus was the most frequent and abundant parasite at all 29 farms, whereas Gyrodactylus cichlidarum was found in 26 of the 29 farms. The RDA showed that the most important predictors were the concentration of nitrites and ammonium and the water exchange rate. The GAM showed the significant effect of the tank capacity, no use of quarantine area and no use of prophylactic treatments on the mean abundance of G. cichlidarum. The geographical distribution patterns of the mean abundance of most parasite species exhibited clustering near to the coast of Yucatán. CONCLUSION: Two groups of farms were distinguished: (i) farms with medium to high technology, where the most frequent and abundant parasite was G. cichlidarum, and (ii) farms with low technology, where the most frequent and abundant parasite was C. sclerosus. Good biosecurity practices such as the use of quarantine and prophylactic treatments prior to the introduction of infected Nile tilapia to the farms are recommended to avoid the establishment of parasites such as G. cichlidarum in farms.

Inter-cohort growth for three tropical resources: tilapia, octopus and lobster.

Growth parameters are an important component for the stock assessment of exploited aquatic species. However, it is often difficult to apply direct methods to estimate growth and to analyse the differences between males and females, particularly in tropical areas. The objective of this study was to analyse the inter-cohort growth of three tropical resources and discuss the possible fisheries management implications. A simple method was used to compare individual growth curves obtained from length frequency distribution analysis, illustrated by case studies of three tropical species from different aquatic environments: tilapia (Oreochromis aureus), red octopus (Octopus maya) and the Caribbean spiny lobster (Panulirus argus). The analysis undertaken compared the size distribution of males and females of a given cohort through modal progression analysis. The technique used proved to be useful for highlighting the differences in growth between females and males of a specific cohort. The potential effect of extrinsic and intrinsic factors on the organism's development as reflected in the size distribution of the cohorts is discussed.

Inter-cohort growth for three tropical resources: tilapia, octopus and lobster / Crecimiento ínter-cohorte para tres recursos tropicales: tilapia, pulpo y langosta

Growth parameters are an important component for the stock assessment of exploited aquatic species. However, it is often difficult to apply direct methods to estimate growth and to analyse the differences between males and females, particularly in tropical areas. The objective of this study was to analyse the inter-cohort growth of three tropical resources and discuss the possible fisheries management implications. A simple method was used to compare individual growth curves obtained from length frequency distribution analysis, illustrated by case studies of three tropical species from different aquatic environments: tilapia (Oreochromis aureus),red octopus (Octopus maya)and the Caribbean spiny lobster (Panulirus argus).The analysis undertaken compared the size distribution of males and females of a given cohort through modal progression analysis. The technique used proved to be useful for highlighting the differences in growth between females and males of a specific cohort. The potential effect of extrinsic and intrinsic factors on the organism's development as reflected in the size distribution of the cohorts is discussed.

Los parámetros de crecimiento son un componente importante para la evaluación de las poblaciones de especies acuáticas explotadas. Sin embargo, es complicado aplicar métodos directos para estimar el crecimiento y analizar las diferencias entre machos y hembras particularmente en zonas tropicales. El objetivo de este estudio fue analizar el crecimiento entre cohortes de tres recursos tropicales y discutir las posibles implicaciones en el manejo pesquero. Se utilizó un método simple para comparar las curvas de crecimiento individual obtenidas a través del análisis de distribución de frecuencias de longitudes, para ello se usaron tres casos de estudio de especies tropicales provenientes de diferentes ambientes acuáticos: tilapia (Oreochromis aureus),pulpo rojo (Octopus maya)y la langosta del caribe (Panulirus argus).El análisis consistió en comparar la distribución de longitudes de hembras y machos obtenidas del análisis de progresión modal. Esta técnica puede ser utilizada para resaltar las diferencias en el crecimiento entre hembras y machos de una cohorte específica. En este documento se discute el efecto potencial de los factores intrínsecos y extrínsecos en el desarrollo de los organismos como se refleja en la distribución de tallas de las cohortes.