Cryptic speciation in the vermilion rockfish (Sebastes miniatus) and the role of bathymetry in the speciation process.

A recent phylogenetic review of the genus Sebastes suggested the existence of a cryptic species of vermilion rockfish (Sebastes miniatus). To evaluate the geographical and bathymetric range of the Type 1 and Type 2 forms reported in that study, cytochrome b sequences were examined from 548 fish. Type 1 fish were found primarily south of Point Conception on reefs deeper than 100 m. Type 2 fish were common range-wide at sites shallower than 100 m. Reproductive isolation between the two types was tested using nine microsatellite loci. Estimates of genetic divergence were made using the fixation index (F(ST)) and correspondence between haplotype and genotype was tested by Bayesian population assignment and multivariate plotting of individual genotypes. Microsatellite analyses gave strong support for the presence of two distinct groups of genotypes. All fish with Type 1 haplotypes and fish with Type 2 haplotypes from < 100 m depth had genotypes unique to their haplotype group. However, most (68%) fish with Type 2 haplotypes from > 100 m depth assigned strongly to the Type 1 genotype group. Morphometric comparisons between the two genotypic groups revealed significant differences at three of the six examined measurements. Differences in both genetics, depth of occurrence, and morphology suggest these are separate species. This observation along with evidence of depth segregation in many recent species pairs led us to hypothesize a speciation model for Sebastes spp. by which the loss or truncation of a depth-related ontogenetic migration can lead to the creation of reproductively isolated populations.

Cryptic species of rockfishes (Sebastes: Scorpaenidae) in the southern hemisphere inferred from mitochondrial lineages.

We used mitochondrial DNA sequence variation of Sebastes from the southeastern Pacific and three localities in the South Atlantic to address long-standing systematic and evolutionary issues regarding the number of species in the Southern Hemisphere. Sequences of the hypervariable mitochondrial control region were obtained from 10 specimens of S. capensis from South Africa (n = 5) and from Tristan da Cunha Island (n = 5) and 27 of S. oculatus from Valparaiso, Chile (n = 10), and the Falkland Islands (n = 17). Results of the study include (1) significant levels of genetic differentiation among the sampled populations (phi ST = 0.225, P < .000001), thus indicating limited gene flow; (2) corroboration of the existence of two different lineages of austral Sebastes corresponding to S. capensis and S. oculatus; (3) finding that S. capensis is not restricted to Tristan da Cunha and South Africa, but is widespread across the South Atlantic; (4) the position of S. capensis as the ancestral lineage of the austral Sebastes; (5) the existence of a third evolutionary lineage with high levels of genetic divergence, particularly abundant in the south-western Atlantic, which may be recognized as a third austral species of Sebastes.

Evolution of a mitochondrial cytochrome b gene sequence in the species-rich genus sebastes (Teleostei, Scorpaenidae) and its utility in testing the monophyly of the subgenus Sebastomus.

The ecologically diverse and species-rich rockfishes (Sebastes) are a useful group for the study of marine speciation. The monophyly of the genus is generally accepted, as is the validity of most of the numerous species found along the West Coast of North America. However, the subgeneric groupings that would help in the proposal and interpretation of various speciation schemes are poorly supported based on widely overlapping morphological characters. The use of genetic characters provides an alternative approach. In this study, we present the first quantitative analysis supporting the monophyly of all 14 species of the subgenus Sebastomus among 54 congeners. The structural features and evolution of the 750 bp of the cytochrome b gene used to test the monophyly were similar to those of other vertebrates. Low levels of intrageneric sequence divergence (<10%) and incipient levels of saturation at third-codon positions were found in the gene. The monophyly of Sebastomus was supported in extensive phylogenetic analyses using distance, cladistic, and likelihood methods. Further corroboration was obtained from permutation- and simulation-based statistical tests.

Molecular evolution, systematics, and zoogeography of the rockfish subgenus Sebastomus (Sebastes, Scorpaenidae) based on mitochondrial cytochrome b and control region sequences.

Sebastomus is one of the most species-rich subgenera of Sebastes, whose monophyly is well supported by morphological and molecular data. We present the first description of the complete nucleotide sequence of the mitochondrial cytochrome b gene and the partial sequence of the control region of the 14 species of Sebastomus. We used these data in phylogenetic analyses to investigate their evolutionary relationships. Extremely low levels of sequence divergence indicated a recent ancestry of these species, suggesting a very rapid radiation within the last million years. The molecular data revealed two main clades within Sebastomus, each with species of different affinities that invaded new habitats from the subgeneric center of distribution. The rapid speciation in this lineage was manifested in the poor resolution of some nodes in the phylogeny. Internal fertilization and viviparity in Sebastes may have played an important role in the sudden acquisition of reproductive barriers during its radiation. The mitochondrial DNA data suggest that prolific speciation in Sebastomus may have been associated with rapid lineage sorting punctuated by allopatric reproductive isolation subsequent to dispersal events and, perhaps, by sympatric reproductive isolation associated with internal fertilization.

Oxygen- and Nitrogen-Dependent Sulfur Metabolism in the Thiotrophic Clam Solemya reidi.

We investigated aerobic and anaerobic thiotrophic metabolism by the gutless clam Solemya reidi and its intracellular symbiotic bacteria. Mean environmental sulfide concentrations in porewater next to animals varied from a high of 888 µM to a low of 17 µM in different sediment samples, while mean thiosulfate concentrations were very low (1-13 µM). The blood of freshly collected clams contained up to 300 µM thiosulfate but little sulfide (≤12 µM). In experimental incubations, clams were able to take up thiosulfate, yet under no conditions could the animals concentrate thiosulfate above external concentrations. Thiosulfate accumulation in the blood during incubations was the result of aerobic but not anaerobic sulfide oxidation by the animals. This finding and previous observations of the presence of high concentrations of thiosulfate in the blood of field-caught clams indicate that the animal portion of the symbiosis normally functions aerobically. The intact symbiosis exhibited nitrate and nitrite respiration under anoxic conditions. Nitrate respiration was stimulated by sulfide, as well as thiosulfate, while nitrite respiration was only stimulated by sulfide. Nitrate respiration also occurred when whole animals were under oxic conditions. Respiration measurements showed that the bacterial symbionts were capable of direct sulfide oxidation. Sulfide-stimulated oxygen consumption by bacterial preparations from the gills of mud-maintained clams reached a maximum rate at 25 µM sulfide and showed no apparent inhibition at sulfide concentrations up to 1 mM sulfide.

Production of thiosulphate during sulphide oxidation by mitochondria of the symbiont-containing bivalve Solemya reidi.

Isolated mitochondria of the bivalve Solemya reidi Bernard oxidize sulphide and couple this oxidation to ADP phosphorylation. The products of mitochondrial sulphide oxidation were analyzed by HPLC using monobromobimane derivatization. Concurrent measurements of respiration were made using sulphide-insensitive oxygen electrodes. S. reidi mitochondria oxidized sulphide exclusively to thiosulphate. The reaction occurred in two steps. One sulphide molecule was first oxidized to sulphite. A second molecule of sulphide was then added oxidatively to form the free product thiosulphate. This oxidation was obligately linked to mitochondrial electron transport and could be inhibited by the cytochrome c oxidase inhibitor hydrogen cyanide, or by low oxygen concentration. The site II inhibitor antimycin A did not inhibit thiosulphate production, indicating that sulphide oxidation is linked through only one ATP coupling site (site III). A calculation of the respiratory potential for ATP synthesis by fully intact mitochondria indicated that 2.0-3.25 ATP per sulphide may be synthesized using the proton potential generated by sulphide oxidation. This estimate far exceeds the published phosphorylation ratios for S. reidi (0.5-1.2 ATP per sulphide). This difference may be accounted for by partial uncoupling of phosphorylation from sulphide-based respiration. This hypothesis is supported by the observation that the respiratory control ratio of mitochondria respiring on sulphide is 41% lower than that of mitochondria respiring on succinate. The respiratory control ratio is an index of the tightness of coupling of respiration to ADP phosphorylation. When the adenylate pool of a eukaryotic cell is mostly phosphorylated, respiration is very slow, owing to the maintenance of a high mitochondrial membrane potential. Uncoupling of oxidative phosphorylation from respiration would be an adaptive advantage to the animal in that it allows for continuous, rapid removal of the toxic molecule hydrogen sulphide.

Deep-sea hydrocarbon seep communities: evidence for energy and nutritional carbon sources.

Mussels, clams, and tube worms collected in the vicinity of hydrocarbon seeps on the Louisiana slope contain mostly "dead" carbon, indicating that dietary carbon is largely derived from seeping oil and gas. Enzyme assays, elemental sulfur analysis, and carbon dioxide fixation studies demonstrate that vestimentiferan tube worms and three clam species contain intracellular, autotrophic sulfur bacterial symbionts. Carbon isotopic ratios of 246 individual animal tissues were used to differentiate heterotrophic (8(13)C = -14 to -20 per mil), sulfur-based (8(13)C = -30 to -42 per mil), and methane-based (8(13)C = <-40 per mil) energy sources. Mussels with symbiotic methanotrophic bacteria reflect the carbon isotopic composition of the methane source. Isotopically light nitrogen and sulfur confirm the chemoautotrophic nature of the seep animals. Sulfur-based chemosynthetic animals contain isotopically light sulfur, whereas methane-based symbiotic mussels more closely reflect the heavier oceanic sulfate pool. The nitrogen requirement of some seep animals may be supported by nitrogen-fixing bacteria. Some grazing neogastropods have isotopic values characteristic of chemosynthetic animals, suggesting the transfer of carbon into the background deep-sea fauna.

Dietary fat inhibits the intestinal metabolism of the carcinogen benzo[a]pyrene in fish.

Following the intestinal absorption of dietary benzo[a]pyrene (BP) by the killifish, this compound becomes incorporated along with dietary triglycerides into membrane-bound fat vacuoles within the intestinal epithelial cell (1985. J. Lipid Res. 26: 428-434). These vacuoles, arising from the smooth endoplasmic reticulum, are important transient structures involved in both the uptake and metabolism of dietary BP and, presumably, other lipophilic toxicants as well. In the present study we used subcellular fractions isolated from the intestines of spot (Leiostomus xanthurus), a teleost fish, to study factors that influence the metabolism of BP in a fat vacuole/microsomal system. Triglyceride-solubilized BP is capable of diffusion from fat vacuoles to microsomal enzymes. Increases in the concentration of fat vacuoles decrease the availability of BP to microsomal BP hydroxylase. The effect of fat vacuoles on the activity of BP hydroxylase becomes more pronounced as the concentration of BP in our test system decreases. Addition of cytosolic glutathione transferases to the fat vacuole/microsomal system enhances the activity of BP hydroxylase. Examination of binding of 3H-labeled BP to killifish (Fundulus heteroclitus) intestinal cytosolic proteins in vivo indicated that a large fraction of the radioactivity was associated within glutathione transferase. These results suggest that dietary fat inhibits metabolism of low levels of BP in the intestine. A consequence of this would be greater exposure of peripheral tissues to dietary carcinogens.

Coassimilation of dietary fat and benzo(a)pyrene in the small intestine: an absorption model using the killifish.

Benzo(a)pyrene (BP) was dissolved in dietary fat and fed in a single dose to killifish (Fundulus heteroclitus). Fluorescence microscopic examinations of small intestinal content and frozen sections of whole small intestine revealed that during fat digestion BP was codispersed in liquid crystalline product phases produced during lipolysis (1979. Patton, J. S., and M. C. Carey, Science. 204: 145-148) and then coabsorbed with dietary lipid followed by its reappearance in intracellular fat droplets. During the time that the absorbed fat remained in the enterocytes, BP fluorescence was initially concentrated in the intracellular fat droplets and then spread throughout the cytosol of the enterocytes. Tissue analyses showed that BP was rapidly metabolized in the intestine and transported to the gallbladder. These studies show that separation of a dissolved hydrophobic carcinogen from dietary fat occurs primarily after the fat has been digested, dispersed, absorbed, and reassembled in the enterocyte. The inability of the enterocyte to discriminate between dietary fat and dissolved carcinogenic compounds may be a partial explanation of the observed link between high fat diets and the incidence of some cancers. In vertebrates, the intestine and not the liver, appears to be the major site of metabolism of dietary polycyclic aromatic hydrocarbons (PAHs).

Similar bioavailability and lymphatic transport of benzo(a)pyrene when administered to rats in different amounts of dietary fat.

This study assessed the effect of concomitant lipid absorption on the bioavailability and lymphatic transport of benzo(a)pyrene (BP), a carcinogenic polycyclic aromatic hydrocarbon (PAH). Conscious, male Sprague-Dawley rats, equipped with biliary and mesenteric lymphatic catheters received intraduodenally a dose of 0.4 mumoles 3H-labeled BP completely dissolved in either 50 mumoles or 500 mumoles of olive oil. Diversion of mesenteric lymph allowed biliary and urinary excretion of 3H to be used as an indirect measurement of relative 3H portal transport. Total radiolabel recovered in a 24-hr period in each group was 20.0 +/- 2.6% of the 3H dose given in 50 mumoles of oil, and 17.0 +/- 1.0% of the 3H dose administered in 500 mumoles of oil. In animals receiving the low-fat test meal, 79.4 +/- 1.4% of the recovered radiolabel was found in bile; the corresponding value for the high fat dose was 78.5 +/- 2.6%. Thus a tenfold variation in the mass of the carrier vehicle (triglyceride oil) did not significantly effect the disposition of BP, and portal, not lymphatic transport, was the major route of post-absorptive transport. Although the chylomicrons produced from both fat doses were initially contaminated with BP, within 1-1.5 hr the radioactivity in lymph began to drop such that by 3 hr in the animals fed high fat, the chylomicrons were essentially free of BP. These results show that the rat enterocyte quickly adapts to PAH-contaminated dietary fat, even during the assimilation of a single dose of fat. Presumably, during the post-absorptive synthesis of chylomicrons from pre-chylomicrons, BP is metabolized and removed from the triglyceride oil droplets.