#DeOlhoNosCorais: a polygonal annotated dataset to optimize coral monitoring.

Corals are colonial animals within the Phylum Cnidaria that form coral reefs, playing a significant role in marine environments by providing habitat for fish, mollusks, crustaceans, sponges, algae, and other organisms. Global climate changes are causing more intense and frequent thermal stress events, leading to corals losing their color due to the disruption of a symbiotic relationship with photosynthetic endosymbionts. Given the importance of corals to the marine environment, monitoring coral reefs is critical to understanding their response to anthropogenic impacts. Most coral monitoring activities involve underwater photographs, which can be costly to generate on large spatial scales and require processing and analysis that may be time-consuming. The Marine Ecology Laboratory (LECOM) at the Federal University of Rio Grande do Norte (UFRN) developed the project "#DeOlhoNosCorais" which encourages users to post photos of coral reefs on their social media (Instagram) using this hashtag, enabling people without previous scientific training to contribute to coral monitoring. The laboratory team identifies the species and gathers information on coral health along the Brazilian coast by analyzing each picture posted on social media. To optimize this process, we conducted baseline experiments for image classification and semantic segmentation. We analyzed the classification results of three different machine learning models using the Local Interpretable Model-agnostic Explanations (LIME) algorithm. The best results were achieved by combining EfficientNet for feature extraction and Logistic Regression for classification. Regarding semantic segmentation, the U-Net Pix2Pix model produced a pixel-level accuracy of 86%. Our results indicate that this tool can enhance image selection for coral monitoring purposes and open several perspectives for improving classification performance. Furthermore, our findings can be expanded by incorporating other datasets to create a tool that streamlines the time and cost associated with analyzing coral reef images across various regions.

Enduring regardless the conditions: Plasticity in modular growth as a strategy to cope with hydrodynamic variation by the invasive sun-coral (Tubastraea spp.).

The susceptibility of a community to invasions is not the only factor influencing the success of the introduction of non-indigenous species (NIS). Because the conditions of the invaded environment tend to be unpredictable, plastic responses should increase the success of NIS in a new environment. Sun-corals are invaders in the Atlantic Ocean that present a range of strategies and plastic responses to deal with stress and distinct environmental conditions. We experimentally tested the plastic responses of sun-corals when exposed to different predation pressures and hydrodynamics in a recreational marina where sun-corals abundance varies spatially along with the environmental conditions. We separated young sun-coral colonies in two experiments: one controlling the presence of predators and the other manipulating water motion. While predation had no effect, revealing that even small young colonies are somehow protected against predators, corals increased colony area under reduced water motion but grew more polyps under greater water motion. These results highlight that plasticity in modular growth may be important for sun-corals to successfully invade distinct regions despite the hydrodynamic conditions. Increasing the colony area implicate in monopolization of space in calmer waters whilst growing more polyps allows it to have more mouths for feeding in turbulent food-poor waters. This response is particularly interesting as it is similar to the response of another NIS in the same site-the bryozoan Schizoporella errata. Phenotypic plasticity of reproductive strategies, including asexual propagation as observed here, appears to be relevant for modular NIS by facilitating the success on the invasion process in variable habitats.

Colonization history meets further niche processes: how the identity of founders modulates the way predation structure fouling communities.

Community assembly relies on deterministic niche-based processes (e.g., biotic interactions), and stochastic sources of unpredictable variation (e.g., colonization history), that combined will influence late-stage community structure. When community founders present distinct functional traits and a colonization-competition trade-off is not operating, initial colonization can result in late-stage assemblages of variable diversity and composed by different species sets, depending if early colonizers facilitate or inhibit subsequent colonization and survival. By experimentally manipulating the functional identity of founders and predators access during the development of fouling communities, we tested how founder traits constrain colonization history, species interactions and thereby regulate community diversity. We used as founders functionally different fouling organisms (colonial and solitary ascidians, and arborescent and flat-encrusting bryozoans) to build experimental communities that were exposed or protected against predation using a caging approach. Ascidians and bryozoans are pioneer colonizers in benthic communities and also good competitors, but the soft-body of ascidians makes them more susceptible to predators than mineralized bryozoans. When ascidians were founders, their dominance (but not richness) was reduced by predation, resulting in no effects of predators on overall diversity. Conversely, when bryozoans were founders, both space limitation and predator effects resulted in species-poor communities, with reduced number and cover of ascidian species and high overall dominance at the end of the experiment. We, thus, highlight that current species interactions and colonization contingencies related to founder identity should not be viewed as isolated drivers of community organization, but rather as strongly interacting processes underlying species distribution patterns and diversity.

Colonial ascidians strongly preyed upon, yet dominate the substrate in a subtropical fouling community.

Higher diversity and dominance at lower latitudes has been suggested for colonial species. We verified this pattern in species richness of ascidians, finding that higher colonial-to-solitary species ratios occur in the tropics and subtropics. At the latitudinal region with the highest ratio, in southeastern Brazil, we confirmed that colonial species dominate space on artificial plates in two independent studies of five fouling communities. We manipulated settlement plates to measure effects of predation and competition on growth and survivorship of colonial versus solitary ascidians. Eight species were subjected to a predation treatment, i.e. caged versus exposed to predators, and a competition treatment, i.e. leaving versus removing competitors, to assess main and interactive effects. Predation had a greater effect on growth and survivorship of colonial compared to solitary species, whereas competition did not show consistent patterns. We hypothesize that colonial ascidians dominate at this subtropical site despite being highly preyed upon because they regrow when partially consumed and can adjust in shape and space to grow into refuges. We contend that these means of avoiding mortality from predation can have large influences on diversification patterns of colonial species at low latitudes, where predation intensity is greater.

Persistence and space preemption explain species-specific founder effects on the organization of marine sessile communities.

Community assembly may not follow predictable successional stages, with a large fraction of the species pool constituted by potential pioneering species and successful founders defined through lottery. In such systems, priority effects may be relevant in the determination of trajectories of developing communities and hence diversity and assemblage structure at later advanced states. In order to assess how different founder species may trigger variable community trajectories and structures, we conducted an experimental study using subtidal sessile assemblages as model. We manipulated the identity of functionally different founders and initial colony size (a proxy of the time lag before the arrival of later species), and followed trajectories. We did not observe any effects of colony size on response variables, suggesting that priority effects take place even when the time lag between the establishment of pioneering species and late colonizers is very short. Late community structure at experimental panels that started either with the colonial ascidian Botrylloides nigrum, or the arborescent bryozoan Bugula neritina, was similar to control panels allowed natural assembling. In spite of high potential for fast space domination, and hence negative priority effects, B. nigrum suffered high mortality and did not persist throughout succession. Bugula neritina provided complex physical microhabitats through conspecific clustering that have enhanced larval settlement of late species arrivals, but no apparent facilitation was observed. Differently, panels founded by the encrusting bryozoan Schizoporella errata led to different and less diverse communities compared to naturally assembled panels, evidencing strong negative priority effects through higher persistence and space preemption. Schizoporella errata founder colonies inhibited further conspecific settlement, which may greatly relax intraspecific competition, allowing resource allocation to colony growth and space domination, thus reducing the chances for the establishment of other species.

Current conditions and colonization history asymmetrically shape the organization of shallow sessile communities after simulated state shifts.

Historical processes affecting biological organization are rarely considered when predicting the effects of disturbance on community structure. In order to assess the relative importance of historical and post-disturbance conditions as determinants of community structure, we undertook reciprocal transplants, at different successional stages, of sessile communities developing at recreational piers that were previously observed to show contrasting fish predation pressure and settlement rate in the São Sebastião Channel, Brazil. Regardless the direction of state shift, after 15 weeks communities converged to the destination site structure, substantially drifting away from the path observed at origin, therefore revealing high susceptibility to environmental change. Although converging, transplanted communities never matched the destination standard in both transplant directions, suggesting that history still mattered, as providing some legacy that lasted, at least, for 15 weeks. The taxonomic groups resisting community drift were hard-bodied invertebrates, which could eventually provide some resilience to these communities through ecosystem engineering.

Co-occurring morphologically distinct algae support a diverse associated fauna in the intertidal zone of Araçá Bay, Brazil / Algas co-ocorrentes e morfologicamente distintas suportam uma diversa fauna associada na zona entremarés na Baía do Araçá, Brasil

Abstract Species diversity is regulated by historical, neutral and niche processes, with species tolerance, dispersal and productivity guiding diversity at larger scales, while habitat heterogeneity and biotic interactions acts in smaller scales. In rocky shores, several organisms provide secondary substrates for mobile fauna, with macroalgae being the most abundant and diverse ones. The patchiness promoted by different macroalgae hosts enhances small-scale heterogeneity and may increase and maintain the diversity of the mobile organisms, since there is a close relationship between the associated fauna and its hosts. In this study we selected three morphologically different macroalgae that coexist in the same rocky shore height in the Araçá Bay, an area under the threat of the nearby harbor expansion, and evaluated the fauna associated to each algal host. Even under similar abiotic pressure (same rocky shore height), the associated fauna of each algal host varied in number and composition, revealing a close relationship. The poorly branched foliose Ulva lactuca sustained a lower density of organisms and was dominated by isopods, while the heavily branched turf and Bostrychietum community showed a high density of organisms, with a dominance of peracarid crustaceans and annelids on the turf and more resistant groups, such as bivalves, acaris and terrestrial insects on the Bostrychietum. Previous studies in the Araçá Bay already revealed a large spatial heterogeneity in the processes and sessile organisms distribution, and here we highlight that this heterogeneity can be observed in an even smaller scale, with different algal hosts mediating the turnover of species in a scale of centimeters and meters, resulting in diversity maintenance of the associated fauna. Since the harbor expansion may prevent the occurrence of macroalgae as a result of light limitation by suspended platforms, we may expect not only a decrease in algal cover but also in the total diversity of the associated fauna in the Araçá Bay.

Resumo A diversidade de espécies é regulada por processos históricos, neutros e de nicho, com a tolerância das espécies, dispersão e produtividade do sistema guiando a diversidade em grandes escalas, enquanto a heterogeneidade do habitat e as interações bióticas atuam em escalas menores. Em costões rochosos uma série de organismos funciona como substrato secundário para a fauna móvel, sendo macroalgas o tipo mais abundante e diverso de substrato. O mosaico formado pelas diferentes macroalgas hospedeiras aumenta a heterogeneidade em pequena escala e pode aumentar e manter a diversidade dos organismos móveis, uma vez que existe uma relação próxima entre a fauna associada e seus hospedeiros. Neste estudo nós selecionamos três macroalgas diferentes morfologicamente e que coexistem na mesma altura no costão rochoso na Baía do Araçá, uma área sob a ameaça de expansão do porto que fica nas proximidades, e analisamos a fauna associada a cada alga hospedeira. Mesmo sob pressões abióticas similares (mesma altura no costão rochoso), a fauna associada a cada alga variou em número e composição, revelando de fato uma relação próxima entre fauna e alga. Ulva lactuca, uma alga foliosa com pouca ramificação, apresentou uma baixa densidade de organismos e foi dominada por isópodes, enquanto que o turf e o Bostrychietum, algas altamente ramificadas e mais complexas, apresentaram uma alta densidade de organismos, com uma dominância de crustáceos peracáridos e anelídeos no turf e grupos mais resistentes como bivalves, ácaros e insetos terrestres no Bostrychietum. Estudos anteriores conduzidos na Baía do Araçá já mostraram uma grande heterogeneidade espacial nos processos ecológicos e na distribuição dos organismos sésseis, e aqui nós ressaltamos que esta heterogeneidade pode ser observada numa escala ainda menor, com as diferentes algas mediando o turnover de espécies numa escala de centímetros a metros, resultando na manutenção da diversidade da fauna associada. Como a expansão do porto pode impedir a ocorrência das macroalgas devido à limitação de luz que será imposta pelas plataformas flutuantes, nós podemos esperar não apenas uma diminuição da cobertura de macroalgas mas também da diversidade total da fauna associada na Baía do Araçá.

Distinct community dynamics at two artificial habitats in a recreational marina.

Man-made facilities along coastlines modify water circulation and sedimentation dynamics which can affect the structure of marine benthic and pelagic communities. To test how environmental heterogeneity associated with a recreational marina affects the structure of the fouling community and the benthic-pelagic link, we conducted an experiment in which predation effects on recruitment and community structure were assessed in two artificial habitats: inside the marina, an area of calm waters and often disturbed by boating activity, and the breakwater, a more hydrodynamic area. Using visual censuses and video footages we also described the predation pressure and the identity of predators on the two areas. Inside the marina, the recruitment of ascidians and serpulids, but not of bryozoans, was restricted in some occasions, possibly due to reduced water circulation. Predation, mainly by the silver porgy fish Diplodus argenteus, reduced the survivor of didemnid ascidians on both areas, but predation intensity was 40 times higher in the breakwater than inside the marina. While the two artificial habitats did not necessarily support distinct communities, low recruitment coupled to weak predation inside the marina, a less dynamic environment, likely imply lower resilience and more susceptibility to disturbance.