Identification and Characterization of Colletotrichum Species Causing Sorghum Anthracnose in Kenya and Screening of Sorghum Germplasm for Resistance to Anthracnose.

Anthracnose caused by Colletotrichum species is one of the most destructive fungal diseases of sorghum with annual yield losses of up to 100%. Although the resistance to anthracnose has been identified elsewhere, the usefulness of the resistance loci differs depending on the pathogen species and pathotypes. Accurate species identification of the disease-causing fungal pathogens is essential for developing and implementing suitable management strategies. The use of host resistance is the most effective strategy of anthracnose management and therefore identification of sources for resistance against unique pathogen pathotypes is fundamental. The aims of this study were to identify and characterize Colletotrichum species associated with sorghum anthracnose and screen sorghum germplasm for resistance to anthracnose. Symptomatic sorghum leaf samples were collected from smallholder farmers in lower eastern Kenya and used for the isolation, identification and characterization of Colletotrichum species using morpho-cultural and phylogenetic analyses with the sequences of the rDNA internal transcribed spacer (ITS) region. Pathogenicity tests of the seven fungal isolates showed that there were no significant differences in the pathogenicity on host plants. The fungal isolates were variable in cultural and morphological characters such as colony type and color, colony diameter, mycelia growth and hyaline. The phenotypic characters observed were useful in the identification of the genus Colletotrichum and not the species. Based on the sequence and phylogenetic analysis of ITS, Colletotrichum sublineola was revealed to be associated with anthracnose on sorghum. Germplasm screening for resistance to anthracnose showed differential reactions of sorghum genotypes to anthracnose under greenhouse and field conditions. The results revealed four resistant genotypes and ten susceptible genotypes against Colletotrichum sublineola. Significant (p ≤ 0.05) differences were observed in grain weight, grain yield, weight of 100 seeds and harvest index among the tested sorghum genotypes. The present study indicated that the Kenyan accessions could be an important source of resistance to anthracnose. The findings from this study provide a platform towards devising efficient disease control strategies and resistance breeding.

Influence of socio-economic and agronomic factors on aflatoxin and fumonisin contamination of maize in western Kenya.

Consumption of maize contaminated with mycotoxins has been associated with detrimental health effects. A farm survey covering 116 push-pull and 139 non-push-pull cropping systems was conducted to determine the socio-economic and agronomic factors that influence farmers' knowledge on incidence and contamination of maize by ear rots and associated mycotoxins in western Kenya. All the respondents were smallholder farmers between the ages of 23 and 80 years, with 50% of them being female. Maize samples were collected from the standing crop in the field of each interviewed farmer and analyzed for aflatoxin and fumonisin. Only a small proportion of farmers had knowledge of aflatoxin and ear rots in maize. Overall, less than 20% of maize samples were contaminated with both aflatoxin and fumonisin, and more maize samples were contaminated with fumonisin as compared to aflatoxin. Proportions of maize samples containing higher than the acceptable Kenyan regulatory threshold (10 µg/kg) for aflatoxin and European Commission regulatory threshold (1,000) µg/kg for fumonisin were lower in maize samples from push-pull cropping system. Age of farmer and county of residence were significantly and positively associated with knowledge of aflatoxin, while cropping system, county of residence, and level of education were positively associated with knowledge of maize ear rots. There was strong correlation between knowledge of maize ear rots and knowledge of aflatoxin. Levels of both aflatoxin and fumonisin were significantly and positively associated with the use of diammonium phosphate (DAP) fertilizer at planting. Aflatoxin levels were also positively associated with stemborer damage. Agronomic practices were not significantly different between push-pull and non-push-pull farmers. However, use of DAP fertilizer was the most important agronomic factor since it was associated with both aflatoxin and fumonisin contamination of maize. These results imply that creating awareness is key to mitigation of ear rots and mycotoxin contamination of maize. The results also suggest that the levels of aflatoxin and fumonisin in maize in western Kenya were influenced both by pre-harvest agronomic practices and by the cropping system adopted, push-pull or not.

Brine shrimp cytotoxicity and antimalarial activity of plants traditionally used in treatment of malaria in Msambweni district.

CONTEXT: In Kenya, most people use traditional medicine and medicinal plants to treat many diseases including malaria. To manage malaria, new knowledge and products are needed. Traditional herbal medicine has constituted a good basis for antimalarial lead discovery and drug development. OBJECTIVES: To determine in vivo antimalarial activity and brine shrimp toxicity of five medicinal plants traditionally used to treat malaria in Msambweni district, Kenya. MATERIALS AND METHODS: A 0.2 ml saline solution of 100 mg/kg aqueous crude extracts from five different plant parts were administered orally once a day and evaluated for their in vivo chemosuppressive effect using Plasmodium berghei berghei-infected Swiss mice for four consecutive days. Their safety was also determined using Brine shrimp lethality test: Grewia trichocarpa Hochst ex A. Rich (Tiliaceae) root, Dicrostachys cinerea (L) Wight et Am (Mimosaceae) root, Tamarindus indica L. (Caesalpiniaceae) stem bark, Azadirachta indica (L) Burn. (Meliaceae) root bark, and Acacia seyal Del. (Mimosaceae) root. RESULTS: Parasitaemia was as follows: A. indica, 3.1%; D. cinerea, 6.3%; T. indica, 25.1%; A. seyal, 27.8%; and G. trichocarpa, 35.8%. In terms of toxicity, A. indica root bark extract had an LC50 of 285.8 µg/ml and was considered moderately toxic. T. indica stem bark extract and G. trichocarpa root extract had an LC50 of 516.4 and 545.8 µg/ml, respectively, and were considered to be weakly toxic while A. seyal and D. cinerea root extracts had a LC50 >1000 µg/ml and were, therefore, considered to be non-toxic. DISCUSSION AND CONCLUSION: All extracts had antimalarial activity that was not significant compared to chloroquine (p ≥ 0.05). No extract was toxic to the arthropod invertebrate, Artemia salina L. (Artemiidae) larvae, justifying the continued use of the plant parts to treat malaria.

Interactions of Fusarium species during prepenetration development.

Interspecies interactions between Fusarium avenaceum, Fusarium culmorum, Fusarium graminearum, Fusarium poae, and Fusarium tricinctum were studied during early growth stages of isolates on model surfaces. Additionally, germination and germ tube growth of the pathogens were studied on attached and detached wheat leaves at 10 °C and 22 °C. Two-species interactions between Fusarium isolates during germination and germ tube growth were assessed after 8 hours of incubation. All species except F. tricinctum germinated and grew faster at higher than lower temperature. All species were able to germinate with more than one germ tube per conidium cell; and germination and germ tube growth were faster on leaves than on glass surface. Interactions among Fusarium species during germination and germ tube growth were predominantly competitive with macroconidia-producing species being more competitive. It is concluded that the type of conidia as well as environmental factors influence the competitiveness of Fusarium species during early stages of growth.