Population genetics of shortnose sturgeon Acipenser brevirostrum based on mitochondrial DNA control region sequences.

Shortnose sturgeon is an anadromous North American acipenserid that since 1973 has been designated as federally endangered in US waters. Historically, shortnose sturgeon occurred in as many as 19 rivers from the St. John River, NB, to the St. Johns River, FL, and these populations ranged in census size from 10(1) to 10(4), but little is known of their population structure or levels of gene flow. We used the polymerase chain reaction (PCR) and direct sequence analysis of a 440 bp portion of the mitochondrial DNA (mtDNA) control region to address these issues and to compare haplotype diversity with population size. Twenty-nine mtDNA nucleotide-substitution haplotypes were revealed among 275 specimens from 11 rivers and estuaries. Additionally, mtDNA length variation (6 haplotypes) and heteroplasmy (2-5 haplotypes for some individuals) were found. Significant genetic differentiation (P < 0.05) of mtDNA nucleotide-substitution haplotypes and length-variant haplotypes was observed among populations from all rivers and estuaries surveyed with the exception of the Delaware River and Chesapeake Bay collections. Significant haplotype differentiation was even observed between samples from two rivers (Kennebec and Androscoggin) within the Kennebec River drainage. The absence of haplotype frequency differences between samples from the Delaware River and Chesapeake Bay reflects a probable current absence of spawning within the Chesapeake Bay system and immigration of fish from the adjoining Delaware River. Haplotypic diversity indices ranged between 0.817 and 0.641; no relationship (P > 0.05) was found between haplotype diversity and census size. Gene flow estimates among populations were often low (< 2.0), but were generally higher at the latitudinal extremes of their distribution. A moderate level of haplotype diversity and a high percentage (37.9%) of haplotypes unique to the northern, once-glaciated region suggests that northern populations survived the Pleistocene in a northern refugium. Analysis of molecular variance best supported a five-region hierarchical grouping of populations, but our results indicate that in almost all cases populations of shortnose sturgeon should be managed as separate units.

Altered gene expression and genetic damage in North American fish populations.

Populations of marine, estuarine, and freshwater fish from highly urban and industrialized sites in North America often exhibit elevated prevalences of neoplastic, preneoplastic, and nonneoplastic hepatic lesions, and sometimes epidermal neoplasms compared to conspecifics from more pristine reference locales. Positive statistical associations with environmental concentrations of PAHs and other xenobiotics and experimental laboratory studies suggest a chemical etiology to these epizootics. Studies have investigated the expression of carcinogenically relevant genes, the extent of overall DNA damage, somatic cell mutations, germ line polymorphisms, and overall levels of genetic diversity in fish from these populations and other polluted sites. In general, elevated levels of cytochrome P4501A expression have been found in fish from contaminated locales; however, inhibition of gene induction has been seen in hepatic lesions and in normal tissue in fish from the most contaminated sites, perhaps due to genetic adaptation or physiological acclimation. Levels of bulky hepatic DNA adducts, as detected by 32P-postlabeling, are almost always elevated in fish from populations that are exposed to highly contaminated environments. However, levels of DNA adducts were not always predictive of the vulnerability to neoplasia of populations and species from polluted sites. Elevated levels of oxygen radical-induced DNA damage have been observed in hepatic tumors, preneoplastic lesions, and normal livers in a single species of flatfish from contaminated sites; however, the prevalences of these alterations in other species and at other polluted sites has yet to be evaluated. Frequent alterations in the K-ras oncogene have been reported in hepatic neoplasms in several species from highly contaminated sites and also in embryos that were experimentally exposed to oil-contaminated sediments. Studies also suggest that heritable germ line polymorphisms, altered allelic frequencies, and reductions in overall genetic diversity may have occurred in some highly impacted populations; however, the origin and functional significance of altered allelic frequencies have largely yet to be evaluated. In summary, feral fish appear particularly sensitive to DNA alterations from xenobiotics, perhaps due to their unusually high levels of exposure, relatively inefficient DNA repair, and the high frequency of polyploidy in some taxa and provide excellent models to explore the relationships between xenobiotic exposure and altered gene structure and expression.

Stock structure and homing fidelity in Gulf of Mexico sturgeon (Acipenser oxyrinchus desotoi) based on restriction fragment length polymorphism and sequence analyses of mitochondrial DNA.

Efforts have been proposed worldwide to restore sturgeon populations through the use of hatcheries to supplement natural reproduction and to reintroduce sturgeon where they have become extinct. We examined the population structure and inferred the extent of homing in the anadromous Gulf of Mexico (Gulf) sturgeon (Acipenser oxyrinchus desotoi). Restriction fragment length polymorphism and control region sequence analyses of mitochondrial DNA (mtDNA) were used to identify haplotypes of Gulf sturgeon specimens obtained from eight drainages spanning the subspecies' entire distribution from Louisiana to Florida. Significant differences in haplotype frequencies indicated substantial geographic structuring of populations. A minimum of four regional or river-specific populations were identified (from west to east): (1) Pearl River, LA and Pascagoula River, MS, (2) Escambia and Yellow rivers, FI, (3) Choctawbatchee River, FL and (4) Apalachicola Ochlockonee, and Suwannee rivers, FL. Estimates of maternally mediated gene flow between any pair of the four regional or river-specific stocks ranged between 0.15 to 1.2. Tandem repeats in the mtDNA control region of Gulf sturgeon were not perfectly conserved. This result, together with an absence of heteroplasmy and length variation in Gulf sturgeon mtDNA, indicates that the molecular mechanisms of mtDNA control region sequence evolution differ among acipenserids.