The phosphorylation of the movement protein TGBp1 regulates the accumulation of the Bamboo mosaic virus.

Phosphorylation and dephosphorylation of viral movement proteins plays a crucial role in regulating virus movement. Our study focused on investigating the movement protein TGBp1 of Bamboo mosaic virus (BaMV), which is a single-stranded positive-sense RNA virus. Specifically, we examined four potential phosphorylation sites (S15, S18, T58, and S247) within the TGBp1 protein. To study the impact of phosphorylation, we introduced amino acid substitutions at the selected sites. Alanine substitutions were used to prevent phosphorylation, while aspartate substitutions were employed to mimic phosphorylation. Our findings suggest that mimicking phosphorylation at S15, S18 and T58 of TGBp1 might be linked to silencing suppressor activities. The phosphorylated form at these sites exhibits a loss of silencing suppressor activity, leading to reduced viral accumulation in the inoculated leaves. Furthermore, mimicking phosphorylation at residues S15 and S18 could diminish viral accumulation at the single-cell level, while doing so at residue T58 could influence virus movement. However, mimicking phosphorylation at residue S247 does not appear to be relevant to both functions of TGBp1. Overall, our study provides insights into the functional significance of specific phosphorylation sites in BaMV TGBp1, illuminating the regulatory mechanisms involved in virus movement and silencing suppression.

Diagnosis and detection of pneumonia using weak-label based on X-ray images: a multi-center study.

PURPOSE: Development and assessment the deep learning weakly supervised algorithm for the classification and detection pneumonia via X-ray. METHODS: This retrospective study analyzed two publicly available dataset that contain X-ray images of pneumonia cases and normal cases. The first dataset from Guangzhou Women and Children's Medical Center. It contains a total of 5,856 X-ray images, which are divided into training, validation, and test sets with 8:1:1 ratio for algorithm training and testing. The deep learning algorithm ResNet34 was employed to build diagnostic model. And the second public dataset were collated by researchers from Qatar University and the University of Dhaka along with collaborators from Pakistan and Malaysia and some medical doctors. A total of 1,300 images of COVID-19 positive cases, 1,300 normal images and 1,300 images of viral pneumonia for external validation. Class activation map (CAM) were used to location the pneumonia lesions. RESULTS: The ResNet34 model for pneumonia detection achieved an AUC of 0.9949 [0.9910-0.9981] (with an accuracy of 98.29% a sensitivity of 99.29% and a specificity of 95.57%) in the test dataset. And for external validation dataset, the model obtained an AUC of 0.9835[0.9806-0.9864] (with an accuracy of 94.62%, a sensitivity of 92.35% and a specificity of 99.15%). Moreover, the CAM can accurately locate the pneumonia area. CONCLUSION: The deep learning algorithm can accurately detect pneumonia and locate the pneumonia area based on weak supervision information, which can provide potential value for helping radiologists to improve their accuracy of detection pneumonia patients through X-ray images.

Inhibition of NMDA Receptor Activation in the Rostral Ventrolateral Medulla by Amyloid-ß Peptide in Rats.

N-methyl-D-aspartate (NMDA) receptors, a subtype of ionotropic glutamate receptors, are important in regulating sympathetic tone and cardiovascular function in the rostral ventrolateral medulla (RVLM). Amyloid-beta peptide (Aß) is linked to the pathogenesis of Alzheimer's disease (AD). Cerebro- and cardiovascular diseases might be the risk factors for developing AD. The present study examines the acute effects of soluble Aß on the function of NMDA receptors in rats RVLM. We used the magnitude of increases in the blood pressure (pressor responses) induced by microinjection of NMDA into the RVLM as an index of NMDA receptor function in the RVLM. Soluble Aß was applied by intracerebroventricular (ICV) injection. Aß1-40 at a lower dose (0.2 nmol) caused a slight reduction, and a higher dose (2 nmol) showed a significant decrease in NMDA-induced pressor responses 10 min after administration. ICV injection of Aß1-42 (2 nmol) did not affect NMDA-induced pressor responses in the RVLM. Co-administration of Aß1-40 with ifenprodil or memantine blocked the inhibitory effects of Aß1-40. Immunohistochemistry analysis showed a significant increase in the immunoreactivity of phosphoserine 1480 of GluN2B subunits (pGluN2B-serine1480) in the neuron of the RVLM without significant changes in phosphoserine 896 of GluN1 subunits (pGluN1-serine896), GluN1 and GluN2B, 10 min following Aß1-40 administration compared with saline. Interestingly, we found a much higher level of Aß1-40 compared to that of Aß1-42 in the cerebrospinal fluid (CSF) measured using enzyme-linked immunosorbent assay 10 min following ICV administration of the same dose (2 nmol) of the peptides. In conclusion, the results suggest that ICV Aß1-40, but not Aß1-42, produced an inhibitory effect on NMDA receptor function in the RVLM, which might result from changes in pGluN2B-serine1480 (regulated by casein kinase II). The different elimination of the peptides in the CSF might contribute to the differential effects of Aß1-40 and Aß1-42 on NMDA receptor function.

Accelerated cropland expansion into high integrity forests and protected areas globally in the 21st century.

Intact forests and protected areas (PAs) are central to global biodiversity conservation and nature-based climate change mitigation. However, cropland encroachment threatens the ecological integrity and resilience of their functioning. Using satellite observations, we find that a large proportion of croplands in the remaining forests globally have been gained during 2003-2019, especially for high-integrity forests (62%) and non-forest biomes (60%) and tropical forests (47%). Cropland expansion during 2011-2019 in forests globally has even doubled (130% relative increase) than 2003-2011, with high medium-integrity (190%) and high-integrity (165%) categories and non-forest (182%) and tropical forest biomes (136%) showing higher acceleration. Unexpectedly, a quarter of croplands in PAs globally were gained during 2003-2019, again with a recent accelerated expansion (48%). These results suggest insufficient protection of these irreplaceable landscapes and a major challenge to global conservation. More effective local, national, and international coordination among sustainable development goals 15, 13, and 2 is urgently needed.

Parental effects driven by resource provisioning in Alternanthera philoxeroides-A simulation case study.

Parental environmental effects can be a rapid and effective means for clonal plants in response to temporally or spatially varying environments. However, few studies have quantitatively measured the ecological significance of parental effects in aquatic clonal plants. In this study, we developed a two-generation (parent-offspring) growth model to examine the parental effects of nitrogen (N) conditions on summed and mean performance of clonal offspring of one wetland species Alternanthera philoxeroides. We also examined the role of survival status and developmental stage of clonal offspring in the consequence of parental effects in aquatic clonal plants. Our results indicated direct evidence that (1) there were significant non-linear correlations between the performance of parental plants and initial status of clonal offspring (i.e., the mass and number of clonal propagules); (2) parental N effects on the summed performance of clonal offspring were content-dependent (i.e., there were significant interactions between parental and offspring N effects), while parental effects on the mean performance of offspring were independent of offspring conditions; (3) parental effects mainly occurred at the early development stage of clonal offspring, and then gradually declined at the late stage; (4) the context-dependent parental effects on the summed performance of clonal offspring gradually strengthened when offspring survival was high. The mathematical models derived from the experimental data may help researchers to not only deeply explore the ecological significance of parental environmental effects in aquatic clonal plants, but also to reveal the importance of potential factors that have been often neglected in empirical studies.

A global increase in tree cover extends the growing season length as observed from satellite records.

Plant phenology provides information on the seasonal dynamics of plants, and changes herein are important for understanding the impact of climate change and human management on the biosphere. Land surface phenology is the study of plant phenology across large spatial scales estimated by satellite observations. However, satellite observations (pixels) are often composed of a mixture of vegetation types, like woody vegetation and herbaceous vegetation, having different phenological characteristics. Therefore, any changes in tree cover presumably impact land surface phenology, as trees usually have a different seasonal cycle compared to herbaceous vegetation. On the other hand, changes in land surface phenology are often interpreted as a result of climate change-induced impacts on the photosynthetic activity of vegetation. Therefore, it is important to better understand the role of changes in vegetation cover (here, the proportion between tree and short vegetation cover) in satellite-derived land surface phenology analysis. We studied the impact of changes in tree cover on satellite observed land surface phenology at a global scale over the past three decades. We found an extension of the growing season length in 36.6% of the areas where tree cover increased, whereas only 20.1% of the areas where tree cover decreased showed an increase in growing season length. Furthermore, the ratio between tree cover and short vegetation cover was found to affect changes in the length of the growing season, with the denser tree cover showing a more pronounced extension of the growing season length (especially in boreal forests). These results highlight the importance of changes in tree cover when analyzing the impact of climate change on vegetation phenology. Our study thereby addresses a critical knowledge gap for an improved understanding of changes in land surface phenology during recent decades in the context of climate and human-induced global land cover change.

The confounding effect of snow cover on assessing spring phenology from space: A new look at trends on the Tibetan Plateau.

The Tibetan Plateau is the highest and largest plateau in the world, hosting unique alpine grassland and having a much higher snow cover than any other region at the same latitude, thus representing a "climate change hot-spot". Land surface phenology characterizes the timing of vegetation seasonality at the per-pixel level using remote sensing systems. The impact of seasonal snow cover variations on land surface phenology has drawn much attention; however, there is still no consensus on how the remote sensing estimated start of season (SOS) is biased by the presence of preseason snow cover. Here, we analyzed SOS assessments from time series of satellite derived vegetation indices and solar-induced chlorophyll fluorescence (SIF) during 2003-2016 for the Tibetan Plateau. We evaluated satellite-based SOS with field observations and gross primary production (GPP) from eddy covariance for both snow-free and snow covered sites. SOS derived from SIF was highly correlated with field data (R2 = 0.83) and also the normalized difference phenology index (NDPI) performed well for both snow free (R2 = 0.77) and snow covered sites (R2 = 0.73). On the contrary, normalized difference vegetation index (NDVI) correlates only weakly with field data (R2 = 0.35 for snow free and R2 = 0.15 for snow covered sites). We further found that an earlier end of the snow season caused an earlier estimate of SOS for the Tibetan Plateau from NDVI as compared to NDPI. Our research therefore adds new evidence to the ongoing debate supporting the view that the claimed advance in land surface SOS over the Tibetan Plateau is an artifact from snow cover changes. These findings improve our understanding of the impact of snow on land surface phenology in alpine ecosystems, which can further improve remote sensing based land surface phenology assessments in snow-influenced ecosystems.

A physical approach for the estimation of the SERS enhancement factor through the enrichment and separation of target molecules using magnetic adsorbents.

The controllable synthesis of nanosized Fe3O4 (10-20 nm) encapsulated in different numbers of graphene layers (1-5 layers) (Fe3O4@DGL NPs) was realized through a facile and green hydrothermal reaction at a temperature as low as 200 °C. The competitive reduction-oxidation between reducing ethylene glycol (EG) and oxidizing H2O under hydrothermal conditions resulted in the emergence of a magnetic Fe3O4 core. Then, the pyrolytic reaction of the polyvinyl alcohol (PVA) molecules attached to the surface of the Fe3O4 core with different surface densities led to the formation of graphene with a controlled number of layers. These Fe3O4@DGL NPs exhibited fast adsorption and sensitive SERS detection for rhodamine B (RhB). A physical and mathematical model was proposed for the estimation of the enhancement factor (EF) by combining the adsorption efficiency and SERS of RhB. This approach and model are applicable for the adsorption, sensitive SERS detection and determination of SERS EF when using functional magnetic nanoparticles as the adsorbent. The Fe3O4@1G NPs were also used as a novel nano-adsorbent for the fast removal of Escherichia coli (E. coli) from an aqueous solution. The Fe3O4@1G NPs regenerated after 3 cycles also showed high efficiency in the adsorption and separation of RhB and E. coli.

Biosurfactant trehalose lipid-enhanced ultrasound-assisted micellar extraction and determination of the main antioxidant compounds from functional plant tea.

Hydrosoluble trehalose lipid (a biosurfactant) was employed for the first time as a green extraction solution to extract the main antioxidant compounds (geniposidic acid, chlorogenic acid, caffeic acid, and rutin) from functional plant tea (Eucommia ulmoides leaves). Single-factor tests and response surface methodology were employed to optimize the extraction conditions for ultrasound-assisted micellar extraction combined with ultra-high-performance liquid chromatography in succession. A Box-Behnken design (three-level, three-factorial) was used to determine the effects of extraction solvent concentration (1-5 mg/mL), extraction solvent volume (5-15 mL), and extraction time (20-40 min) at a uniform ultrasonic power and temperature. In consequence, the best analyte extraction yields could be attained when the trehalose lipid solution concentration was prepared at 3 mg/mL, the trehalose lipid solution volume was 10 mL and the extraction time was set to 35 min. In addition, the recoveries of the antioxidants from Eucommia ulmoides leaves analyzed by this analytical method ranged from 98.2 to 102%. These results indicated that biosurfactant-enhanced ultrasound-assisted micellar extraction coupled with a simple ultra-high-performance liquid chromatography method could be effectively applied in the extraction and analysis of antioxidants from Eucommia ulmoides leaf samples.

Acceleration of global vegetation greenup from combined effects of climate change and human land management.

Global warming and human land management have greatly influenced vegetation growth through both changes in spring phenology and photosynthetic primary production. This will presumably impact the velocity of vegetation greenup (Vgreenup, the daily rate of changes in vegetation productivity during greenup period), yet little is currently known about the spatio-temporal patterns of Vgreenup of global vegetation. Here, we define Vgreenup as the ratio of the amplitude of greenup (Agreenup) to the duration of greenup (Dgreenup) and derive global Vgreenup from 34-year satellite leaf area index (LAI) observations to study spatio-temporal dynamics of Vgreenup at the global, hemispheric, and ecosystem scales. We find that 19.9% of the pixels analyzed (n = 1,175,453) experienced significant trends toward higher greenup rates by an average of 0.018 m2  m-2  day-1 for 1982-2015 as compared to 8.6% of pixels with significant negative trends (p < 0.05). Global distribution and dynamics of Vgreenup show high spatial heterogeneity and ecosystem-specific patterns, which is primarily determined by the high spatial variation in Agreenup, while the temporal dynamics of Vgreenup are directly controlled by both changes in Dgreenup and Agreenup. Areas with the largest Vgreenup and largest positive trends are both observed in deciduous and mixed forests as compared to nonforest ecosystems showing both lower Vgreenup and trends. For nonforest ecosystems, human-managed ecosystems (e.g., rangelands and rainfed croplands) exhibited higher Vgreenup and positive trends than those of natural counterparts, suggesting strong imprints of human land management on terrestrial ecosystem functioning. Globally, warming has accelerated Vgreenup in temperature-constrained high latitude forest ecosystems and arctic regions, but decelerated Vgreenup in temperate and arid/semiarid areas. These results suggest that the combined effects of climate change and human land management have greatly accelerated global vegetation greenup, with important implications for changes in terrestrial ecosystem functioning and global carbon cycling.

Manifestations of central retinal artery occlusion revealed by fundus fluorescein angiography are associated with the degree of visual loss.

The aim of this study was to investigate the association between central visual impairment and the characteristics of fundus fluorescein angiography (FFA) in patients with central retinal artery occlusion (CRAO). A total of 63 patients were diagnosed with CRAO by FFA. The visual dysfunction was classified into severe, mild and light degrees. Tropicamide was administered for mydriasis. FFA examination was performed using Heidelberg retinal tomography. The associations of age, gender and disease course with CRAO type were analyzed. Three types of manifestations were identified by FFA in 63 eyes, including poor perfusion (18 cases), exudation (22 cases) and mixed types (23 cases) of CRAO. No significant difference was found in age (F=0.171, P=0.844) and disease course (F=0.016, P=0.984) among the three types of CRAO. Similarly, no significant difference was found in gender among the three types of CRAO (χ2=0.176, P=0.916). The damage to vision caused by the exudation type of CRAO was not as severe as that caused by the poor perfusion and mixed types of CRAO. The distributions of damage severity caused by the poor perfusion and mixed types of CRAO were similar. In conclusion, the FFA observations for CRAO can be classified into three types of manifestations. The damage to vision in patients with CRAO is likely to be associated with poor perfusion in the retinal artery rather than exudation affecting the retina or optic disc. The patterns of clinical manifestations are not associated with age, gender or disease course.

[Clinical and pathological observation of seven cases of spontaneous sub-retinal hemorrhage].

OBJECTIVE: To improve pathological understanding of massive sub-retinal hemorrhage. METHODS: Retrospective case series study. The clinical and pathological data of 7 cases of massive sub-retinal hemorrhage which were examined in the Pathological Department of Tianjin Eye Hospital from May 1988 to April 2012 were collected. The serial section of eyeball specimens were made with HE and PAS staining. The pathological section were reviewed under the light microscope. Analysis were made again combining with patients' clinical history, imaging findings and the pathological features. RESULTS: In 7 patients, 6 patients were male, 1 patient was female. The age range was from 60 to 82 years old and the average age was 71.7 years old. Four cases were on the right eye and 3 cases were on the left eye. The main clinical feature was sudden loss of vision and 2 cases had acute glaucoma symptoms. Ultrasound examination showed choroidal tumor in 6 cases and retinal detachment with vitreous hemorrhage in one case. The color Doppler ultrasound examination demonstrated choroidal substantive occupying lesion in 3 cases and two of them were detected with blood flow signal. The MRI were examined in 3 cases which showed iso-high signal in T1W1 and iso-low signal in T2W1 suggesting the choroidal melanoma in 2 cases and sub-retinal hemorrhage in 1 case. Six cases were diagnosed clinically as choroidal tumor or melanoma and 1 case was diagnosed as acute angle-closure glaucoma. The enucleation were performed in 7 cases. In these cases, 6 cases were diagnosed pathologically as vitreous hemorrhage, hemorrhagic RPE detachment and massive subretinal hemorrhage. The related choroidal lesions included soft drusen of Bruch membrane in 3 cases, choriocapillaris wall degeneration in 2 cases, fibrovascular membrane formation under RPE in 2 cases, choroidal chronic non-granulomatous inflammation in 4 cases, choroidal vessels wall thickening and sclerosis in 2 cases and choroidal vessels anomaly in one case. The secondary angle-closure glaucoma or angle-open glaucoma were accompanied respectively in 2 cases. Another case of 7 cases was diagnosed pathologically as the rupture of retinal macroaneurysm with massive sub-retinal hemorrhage. CONCLUSIONS: Massive sub-retinal hemorrhage liked to occur in the elderly male patients. The main manifestations were sudden visual loss. A small number of patients had symptoms of acute glaucoma. Ophthalmic ultrasound and imaging characteristics were usually similar to the choroidal substantive neoplasm and were easily misdiagnosed as choroidal melanoma. Pathological examination revealed that the main reasons of massive hemorrhage were from the hemorrhagic RPE detachment and the rupture of retinal macroaneurysm.

Orientation Determination of Cryo-EM Images Using Least Unsquared Deviations.

A major challenge in single particle reconstruction from cryo-electron microscopy is to establish a reliable ab initio three-dimensional model using two-dimensional projection images with unknown orientations. Common-lines-based methods estimate the orientations without additional geometric information. However, such methods fail when the detection rate of common-lines is too low due to the high level of noise in the images. An approximation to the least squares global self-consistency error was obtained in [A. Singer and Y. Shkolnisky, SIAM J. Imaging Sci., 4 (2011), pp. 543-572] using convex relaxation by semidefinite programming. In this paper we introduce a more robust global self-consistency error and show that the corresponding optimization problem can be solved via semidefinite relaxation. In order to prevent artificial clustering of the estimated viewing directions, we further introduce a spectral norm term that is added as a constraint or as a regularization term to the relaxed minimization problem. The resulting problems are solved using either the alternating direction method of multipliers or an iteratively reweighted least squares procedure. Numerical experiments with both simulated and real images demonstrate that the proposed methods significantly reduce the orientation estimation error when the detection rate of common-lines is low.

FAST WAVELET-BASED SINGLE-PARTICLE RECONSTRUCTION IN CRYO-EM.

This paper presents a novel algorithm for the 3D tomographic inversion problem that arises in single-particle electron cryo-microscopy (Cryo-EM). It is based on two key components: 1) a variational formulation that promotes sparsity in the wavelet domain and 2) the Toeplitz structure of the combined projection/back-projection operator. The first idea has proven to be very effective for the recovery of piecewise-smooth signals, which is confirmed by our numerical experiments. The second idea allows for a computationally efficient implementation of the reconstruction procedure, using only one circulant convolution per iteration.

Preconditioning and postconditioning reduce hepatic ischemia-reperfusion injury in rats.

BACKGROUND: Ischemia-reperfusion injury occurs when ischemic tissues or organs suffer from further functional and structural damage when their blood supply recovers. This study aimed to contrast the protective effects of ischemic preconditioning and ischemic postconditioning in hepatic ischemia-reperfusion injury in rats. METHODS: Thirty-two healthy male Wistar rats were randomly divided into four groups: sham-operated (SO), ischemia-reperfusion (IR), ischemic preconditioning (I-pre), and ischemic postconditioning (I-post). Blood samples and hepatic tissue were taken from all groups after the experiments. RESULTS: There were significant differences between the IR, I-pre and I-post groups in alanine aminotransferase and aspartate aminotransferase levels, NF-kappaB p65 expression, apoptosis index and superoxide dismutase activity in hepatic tissue. There were no significant differences between the I-pre and I-post groups. CONCLUSIONS: Ischemic postconditioning and ischemic preconditioning reduce hepatic ischemia-reperfusion injury, but in clinical practice the former is a more appropriate choice.

[Prevention and treatment of complications of laparoscopic cholecystectomy].

OBJECTIVE: To investigate the prevention and the treatment of the complications of laparoscopic cholecystectomy, including bile duct injury, bile leakage and bleeding. METHODS: 1,100 patients undergoing laparoscopic cholecystectomy from October 1993 to January 2003 were retrospectively analyzed. RESULTS: Operative complications included bile duct injury in one case (0.09%), bile leakage in three cases (0.27%), and bleeding in four cases (0.36%). All these complications were cured using operation and non-operation methods. CONCLUSIONS: To prevent bile duct injury, bile leakage as well as bleeding, abnormal cystic duct and cystic artery should be identified, and electric damage to the surrounding tissues should be avoided during operation.

[Application of confocal scanning laser Doppler retinal flowmetry in the measurement of fundus blood flow parameters after retinal detachment surgery].

OBJECTIVE: To discuss the influence of retinal detachment (RD) surgery on the blood flow of retina and optic nerve head. METHODS: Heidelberg Retina Flowmeter (HRF) was used to measure the blood flow of retina and optic nerve head in 62 eyes of 62 patients with postoperative rhegmatogenous RD surgery, including 34 eyes having undertaken vitreoretinal (VR) surgery and 28 eyes, scleral buckling (SB) surgery. Operative methods included scleral encircling procedure, cryotherapy, lensectomy, vitrectomy, perfluorodeclin liquid application, endolaser and C(2)F(6) gas or silicone oil tamponade. RESULTS: The blood flow volume (VOL), blood flow velocity (FLW) and the erythrocyte flow velocity (VEL) of fundus in the postoperative RD eyes were reduced in the comparison with those of the fellow control eyes. The VEL of temporal and nasal papillary disk rim had significant differences (P < 0.05). The VOL, FLW and VEL of the papillary vessel, VOL and FLW of temporal and nasal papillary disk rim, VOL of temporal and nasal juxtapapillary retina in the operative eyes were lower than those of the fellow eyes (P < 0.01). In the comparison between the eyes having undertaken VR surgery and the eyes undertaken SB surgery, the VOL, FLW and VEL of VR surgery were reduced more than those of SB surgery. The VEL of temporal and nasal papillary disk rim and nasal juxtapapillary retina and FLW of temporal juxtapapillary retina had significant differences (P < 0.05). VOL, FLW and VEL of silicone oil tamponade eyes were reduced more than those in the operative eyes without silicone oil tamponade. VOL of nasal papillary disk rim and juxtapapillary retina had significant differences (P < 0.05). VOL and VEL of temporal papillary disk rim, VOL of temporal juxtapapillary retina had very significant differences (P < 0.01). CONCLUSIONS: VR surgery and SB surgery of RD influence papillary and retinal VOL, FLW, VEL. The influence of VR surgery on the fundus blood flow is more significant than that of SB surgery. The silicone oil tamponade also influences the VOL and VEL of the fundus.