RESUMO
This study aimed to understand the epidemiological characteristics of Salmonella in Tibetan pigs. We isolated, identified, and examined via antimicrobial susceptibility testing on Salmonella from Tibetan pigs breeder farms and slaughterhouses in Tibet, China. A genetic evolutionary tree was constructed on the basis of whole genome sequencing (WGS). A total of 81 Salmonella isolates were isolated from 987 samples. The main serovars were Salmonella Typhimurium and Salmonella London in Tibetan pigs. The isolated Salmonella Typhimurium isolates subjected to antimicrobial susceptibility testing showed varying degrees of resistance to ß-lactams, aminoglycosides, fluoroquinolones, sulfonamides, tetracyclines, and amphenicols. WGS analysis was performed on 20 Salmonella Typhimurium isolates in Tibet (n = 10), Jiangsu (n = 10), and 205 genome sequences downloaded from the Enterobase database to reveal their epidemiological and genetic characteristics. They were divided into two clusters based on core genome single-nucleotide polymorphisms: Cluster A with 112 isolates from Tibet and other regions in China and Cluster B with 113 isolates from Jiangsu and other regions. The isolates in Cluster A were further divided into two subclusters: A-1 with 40 isolates including Tibet and A-2 with 72 isolates from other regions. Virulence factors analysis revealed that all isolates from Tibet carried adeG, but this observation was not as common in Salmonella isolates from Jiangsu and other regions of China. Antibiotic resistance genes (ARGs) analysis showed that all isolates from Tibet carried blaTEM-55 and rmtB, which were absent in Salmonella isolates from Jiangsu and other regions of China. Genetic characteristic analysis and biofilm determination indicated that the biofilm formation capabilities of the isolates from Tibet were stronger than those of the isolates from Jiangsu and other regions of China. Our research revealed the epidemic patterns and genomic characteristics of Salmonella in Tibetan pigs and provided theoretical guidance for the prevention and control of local salmonellosis.
RESUMO
In the past few decades, the East Asian summer monsoon (EASM) has experienced an unprecedented weakening, exacerbating drought in northern China, especially in the monsoon margin area. Improving our understanding of monsoon variability will benefit agricultural production, ecological construction, and disaster management. Tree-ring is widely used as proxy data for extending the monsoon history. However, in the East Asian monsoon margin, the tree-ring width were mostly formed before the rainy season, thus may have limited ability to indicate the monsoon variability. Intra-annual density fluctuations (IADFs) can provide higher resolution information on tree growth as well as evidence of short-term climate events. Here, we used Chinese pine (Pinus tabuliformis Carr.) samples from the eastern edge of the Chinese Loess Plateau (CLP), where the climate is deeply affected by monsoon, to investigate the response of tree growth and IADFs frequency to climate variation. We show that tree-ring width and IADFs record significantly different climatic signals. The former was mainly affected by moisture conditions at the end of the previous growing season and the current spring. While the latter was common in years when severe droughts occurred in June and July, especially in June. This period coincides with the onset of the EASM, so we further analyzed the relationship between IADFs frequency and the rainy season. Both correlation analysis and the GAM model suggest that the frequent occurrence of IADFs may be related to the late start of the monsoon rainy season, meaning that we have found a new indicator in tree-ring records that can capture monsoon anomalies. Our results provide further insight into drought variation in the eastern CLP, which also implicates the Asian summer monsoon dynamic.
