[Bioinformatics database and production layout visual analysis platform of medicinal plants:a case study of Dao-di medicinal materials in Sichuan province].

In the new stage of trans-omics and trans-subjects for medicinal plants, it is an urgent need to integrate big data, provide interactive applications, and form a unified and multi-level research system and big data platform. Dao-di medicinal material, as an important source of medicinal plants, is a unique quality concept and comprehensive standard of tranditional Chinese medicine(TCM). Several databases have been developed in China and abroad, such as the Encyclopedia of Traditional Chinese Medicine(ETCM) and the Global Pharmacopoeia Genome Database(GPGD). Yet, most databases do not provide multi-dimensional data, including geographic data, phenotype data, compound data, and genetic data. Sichuan, known as the hometown of TCM therapies and the treasure trove of TCM, is the most representative region of medicinal plant diversity in China. According to the latest data of the fourth national survey of TCM resources, there are more than 8 000 TCM and 86 Dao-di medicinal materials in Sichuan province. Based on resource census data and relevant achievements, this study constructed the bioinformatics database of medicinal plants and the visual analysis platform of production layout by taking the Dao-di medicinal materials in Sichuan province as an example, covering geographic data, phenotype data, compound data, and genetic data. It effectively integrates multi-dimensional data of Dao-di medicinal materials and provides different levels of data interaction applications. The platform is the first large-scale multi-dimensional database and visual platform of Dao-di medicinal materials in Sichuan province, which serves as an essential resource for germplasm resources identification, decomposition of biosynthetic pathways, molecular breeding of varieties and provides medicinal plant resource information and data support for development and utilization of medicinal plants in China and abroad.

[Sources and Characteristics of Regional Background PM1 in North China During the Autumn and Winter Polluted Period].

The campaign of investigating the chemical compositions and particle size distributions of NR-PM1(non-refractory PM1) was conducted by using a High Resolution Time of Flight Aerosol Mass Spectrometer(HR-ToF-AMS) at the Shangdianzi(SDZ) regional atmospheric background site(117.07°E, 40.39°N), northeast of Beijing, from October 17th 2015 to January 27th 2016. The results showed that organics was the main component of PM1, and the proportion of nitrate was higher than that of sulfate in autumn and winter. The mean mass-resolved size distributions for the main components displayed accumulation mode. The wider organic peak shape and larger nitrate peak size indicated that the organics contributed to both small and large particles at the beginning of the particle formation, growth and aging processes, while most of nitrate particles preferred to grow into large particles during the aging process. The ratios of elements between OM and OC, O/C and H/C were calculated as 1.91, 0.58 and 1.58 respectively. The slope of Van Krevelen diagram of organic aerosols during polluted episode was -0.21, whose oxidation state was higher than those of other city sites. Nitrate was the major contributor of NR-PM1 during the polluted period, while organics was significantly higher than that during clean period. The results of back trajectories analysis demonstrated that the air masses were complex during the pollution episode. The northwest wind from central Inner Mongolia and Siberia dominated the clean episodes, which was conducive to the spread of pollutants.

The evolution of optimal resource allocation and mating systems in hermaphroditic perennial plants.

By incorporating the effects of inbreeding depression (ID) on both juveniles and adults survivorship, we developed a new theoretical model for hermaphroditic perennial plants. Our model showed that the effect of the selfing rate on the evolutionarily stable strategy (ESS) reproductive allocation depends on three parameters: (1) the self-fertilized juvenile relative survivorship (SFJRS), (2) the self-fertilized adult relative survivorship (SFARS) and (3) the growth rate of self-fertilized adult, where the SFJRS is the survivorship of self-fertilized juveniles divided by the survivorship of outcrossed juveniles, and likewise for the SFARS. However, the ESS sex allocation decreases as the selfing rate increases. This relationship seems independent of the SFJRS, the SFARS, and the growth rate of self-fertilized adults. Additionally, our model showed that the complete outcrossing is an ESS when the fraction of juvenile inbreeding depression (FJID) is less than 1/2 - τ, where τ is the self-fertilized adults mortality rate caused by ID. In contrast, the complete selfing also acts as an ESS when the FJID is greater than 1/2 - τ. These results could explain the diversity of mating strategies and related resource allocations for plants.

[Study of the change and role of protein C system in ulcerate colitis].

Hypercoagulable state and thrombosis are major lethal causes of ulcerate colitis (UC). The aim of the present study is to explore the change and role of protein C (PC) system in UC thrombosis. 4% dextran sulfate sodium (DSS) was used to induce the UC model, and the body weight, the length of colon, and the weight of spleen were measured after intake of DSS as drinking water for 1 week. The macroscore and microscore were examined. The quantity of macrophage in colon smooth muscle was observed by immunofluorescence, and TNF-α and IL-6 levels in plasma were evaluated by ELISA. Intravital microscopy was applied to observe colonic mucosal microvascular circulation, activities of PC and protein S (PS) were determined by immunoturbidimetry, endothelial cell protein C receptor (EPCR) and thrombomodulin (TM) expressions were detected by immunohistochemistry. In vitro, TNF-α and IL-6 levels were tested in supernatant of macrophage separated from colonic tissue. After stimulation of mouse colonic mucosa microvascular endothelial cells by TNF-α and IL-6 respectively, the activities of PC, PS, activated protein C (APC) were evaluated, and the expressions of EPCR and TM were detected by Western blotting. The results revealed that compared with control, the DSS mouse showed weight loss (P < 0.05), a shortened colon (P < 0.05), and swelled spleen (P < 0.05), accompanied by higher histological score (P < 0.05), as well as infiltration of macrophages, elevated TNF-α and IL-6 levels in plasma (P < 0.01). The intravital microscopy results revealed that compared with control, DSS mice showed significantly enhanced adhesion of leukocytes and colonic mucosal microvascular endothelial cells (P < 0.01), meanwhile, decreased activity of PC and PS in plasma (P < 0.01 or P < 0.05), and down-regulated expression of EPCR (P < 0.01). The degree of inflammation was negatively correlated with the PC activity. In vitro, TNF-α and IL-6 levels were increased in the supernatant of macrophages from DSS mice colonic tissue (P < 0.05), and after incubation of TNF-α or IL-6 with colonic mucosal microvascular endothelial cells, the APC activity was decreased (P < 0.05 or P < 0.01), and expression of EPCR was down regulated (P < 0.05). These results suggest that PC system is inhibited in UC mouse. Presumably, the mechanism may be due to the secretion of cytokines from macrophages and subsequential influence on the function of endothelia cells. Furthermore, enhancement of PC system activity may serve as a new strategy for the treatment of UC.

[Apocynin relieves inflammation in dextran sulfate sodium-induced ulcerative colitis mice: the role of NOXs-ROS-p38MAPK pathway].

The study is aimed to explore the molecular mechanism of the treatment of apocynin in dextran sulfate sodium (DSS)-induced ulcerative colitis (UC) mice. 5% DSS was used to mimic the UC model, and 2% apocynin was applied to treat the UC mice. HE staining was used for histopathological evaluation. Chemiluminescence technique was used to measure reactive oxygen species (ROS) production, and the rate of consumption of NADPH inhibited by DPI was detected to determine the NADPH oxidases (NOXs) activity. Western blot was applied to identify the level of p38MAPK phosphorylation, Griess reaction assay to analyze NO production, immunoenzymatic method to determine prostaglandin E2 (PGE2) production, real time RT-PCR and Western blot to identify the expression of iNOS and COX2, and enzyme linked immunosorbent assay to detect inflammatory cytokines TNF-α, IL-6, IFN-γ, IL-1ß. Rat neutrophils were separated, and then ROS production, NOXs activity, NO and PGE2 production, NOX1 and p-p38MAPK expression were detected. Compared with the UC group, apocynin decreased ROS over-production and NOXs activity (P < 0.01), reduced p38MAPK phosphorylation, inhibited NO, PGE2 and cytokines production (P < 0.01). Apocynin also decreased NOXs activity and ROS over-production (P < 0.01), inhibited p38MAPK phosphorylation and NOX1 expression, and reduced NO and PGE2 production (P < 0.01) in separated neutrophils from UC mice. Therefore, apocynin could relieve inflammation in DSS-induced UC mice through inhibiting NOXs-ROS-p38MAPK signal pathway, and neutrophils play an important role.

[Role of orphan G protein-coupled receptor 55 in diabetic gastroparesis in mice].

The aim of the present study was to explore the role of orphan G protein-coupled receptor 55 (GPR55) in diabetic gastroparesis (DG). Streptozotocin (STZ) was used to mimic the DG model, and the body weight and blood glucose concentration were tested 4 weeks after STZ injection (i.p.). Electrogastrogram and phenolsulfonphthalein test were used for detecting gastric emptying. Motilin (MTL), gastrin (GAS), vasoactive intestinal peptide (VIP), and somatostatin (SS) levels in plasma were determined using radioimmunology. Real-time PCR and Western blot were applied to identify the expression of GPR55 in gastric tissue, and immunohistochemistry was used to detect the distribution. The effect of lysophosphatidylinositol (LPI), an agonist of GPR55, was observed. STZ mice showed increased blood glucose concentration, lower body weight, decreased amplitude of slow wave, and delayed gastric emptying. LPI antagonized these effects of STZ. Compared to the control group, STZ caused significant decreases of MTL and GAS levels (P < 0.01), as well as increases of SS and VIP levels (P < 0.01). The changes of these hormones induced by STZ were counteracted when using LPI. GPR55 located in mice stomach, and it was up-regulated in DG. Although LPI showed no effects on the distribution and expression of GPR55 in normal mice, it could inhibit STZ-induced GPR55 up-regulation. These results suggest GPR55 is involved in the regulation of gastric movement of DG, and may serve as a new target of DG treatment. LPI, an agonist of GPR55, can protect against STZ-induced DG, and the mechanism may involve the change of GPR55 expression and modification of gastrointestinal movement regulating hormones.

Role of endogenous cannabinoid system in the gut.

The plant Cannabis has been used in clinic for centuries, and has been known to be beneficial in a variety of gastrointestinal diseases, such as emesis, diarrhea, inflammatory bowel disease and intestinal pain. In this text, we'll review the components of the endogenous cannabinoid system as well as its role in the regulation of gastrointestinal activities, thus providing relative information for further study. Moreover, modulation of the endogenous cannabinoid system in gastrointestinal tract may provide a useful therapeutic target for gastrointestinal disorders.

Resource elasticity of offspring survival and the optimal evolution of sex ratios.

The fitness of any organisms includes the survival and reproductive rate of adults and the survival of their offspring. Environmental selection pressures might not affect these two aspects of an organism equally. Assuming that an organism first allocates its limited resources to maintain its survival under environmental selection pressure, our model, based on the evolutionarily stable strategy theory, surprisingly shows that the sex ratio is greatly affected by the environmental pressure intensity and by the reproductive resource elasticity of offspring survival. Moreover, the concept of the resource elasticity of offspring survival intrinsically integrates the ecological concepts of K selection and r selection. The model shows that in a species with reproductive strategy K, increased environmental selection pressure will reduce resource allocation to the male function. By contrast, in a species with reproductive strategy r, harsher environmental selection pressure will increase allocation to the male function. The elasticity of offspring survival might vary not only across species, but also across many other factors affecting the same species (e.g., age structure, spatial heterogeneity), which explains sex ratio differences across species or age structures and spatial heterogeneity in the same species.

[Evolutionary stability analysis of asymmetric hawk-dove game considering the impact of common resource].

Explaining the evolution of cooperation remains one of the important problems in both biology and social science. Classical theories mainly based on an assumption that cooperative players are symmetrically interacted. However, almost all the well-studied systems showed that cooperative players are in fact asymmetrically interacted and that asymmetric interaction might greatly affect cooperation behavior of the involved players. Considering the asymmetric interaction and the selection pressure of resources, we present a model that possesses four strategies: strength- cooperation (SC), strength-defection (SD), weakness-cooperation (WC) and weakness-defection (WD). Combining evolutionary game theory with dynamical stability theory, we find that the evolutionary results closely depend on the asymmetric interaction and selection pressure of resources as well as cost-to-benefit ratio of conflict. When the common resources are plentiful, the cost-to-benefit ratio of conflict is negatively correlated with the probability of SC, while it is positively correlated with the probability of SD and WD. With increasing the strength ratio between the strong and weak players, the proportion of SC and SD will increase, while the proportion of WD will reduce. The model developed here has intrinsically integrated Boxed Pigs game and Hawk-Dove game. When the common resource is at shortage, the Boxed Pigs game will transform into Hawk-Dove game under the increase of the strength ratio between the strong and weak players.

Aerosol background at two remote CAWNET sites in western China.

The frequency distributions and some statistical features of background aerosol concentrations were investigated at two remote China Atmosphere Watch Network (CAWNET) stations. The estimated elemental carbon (EC) background at Akdala (AKD) in the mid-latitudes of northwestern China (approximately 0.15 microg m(-3)) was only half of that at Zhuzhang (ZUZ) in low-latitude southwestern China (approximately 0.30 microg m(-3)). The contributions of EC to the aerosol mass also differed between sites: EC contributed 3.5% of the PM(10) mass at AKD versus 5.1% at ZUZ. Large percentages of the total organic carbon (OC) apparently were secondary organic carbon (SOC); SOC/OC averaged 81% at ZUZ and 68% at AKD. The OC/EC ratios in PM(10) (ZUZ: 11.9, AKD: 12.2) were comparable with other global background sites, and the OC/EC ratios were used to distinguish polluted periods from background conditions. The SO(4)(2)(-), NH(4)(+) and soil dust loadings at AKD were higher and more variable than at ZUZ, probably due to impacts of pollution from Russia and soil dust from the Gobi and adjacent deserts. In contrast to ZUZ, where the influences from pollution were weaker, the real-time PM(10) mass concentrations at AKD were strongly skew right and the arithmetic mean concentrations of the aerosol populations were higher than their medians. Differences in the aerosol backgrounds between the sites need to be considered when evaluating the aerosol's regional climate effects.

Chemical characteristics of aerosol particles (PM2.5) at a site of Horqin Sand-land in northeast China.

The objective of this study was to characterize the mass concentration and chemical composition of aerosol particles (PM2.5) collected at Tongliao (Inner Mongolia Autonomous Region, China), a site in Horqin Sand-land in northeast China. During spring 2005, the mass concentration for PM2.5 was (126 +/- 71)microg/m3 in average. Five dust storm events were monitored with higher concentration of (255 +/- 77)microg/m3 in average than the non dusty days of (106 +/- 44)microg/m3. Concentrations for 20 elements were obtained by the PIXE method. Mass concentrations of Al, Mg, Si, K, Ca, Ti, Mn, and V, which increased with the PM2.5 concentration, were higher than the pollution elements (S, Cl, Zn, Ar, Se, Br, and Pb). Enrichment factor relative to crust material was also calculated, which showed dust trace elements were mainly from earth upper crust and pollution elements were dominated the anthropogenic aerosols. The Si/Al, Ca/Al, and Fe/Al ratios in PM2.5 samples at Tongliao were 4.07, 0.94, and 0.82, respectively, which were remarkably different with those on other source regions, such as "Western desert source region", "North desert source region" and central Asia source. Air mass back-trajectory analysis identified three kinds of general pathways were associated with the aerosol particle transport to Tongliao, but have the similar elemental ratios, implying that elemental signatures for dust aerosol from Horqin Sand-land were different with other regions.

[Clay ratio as a tracer to assess the origin of soil-derived dust].

The objectives of this research are to characterise the mineralogy of soil-derived dust in Northern China and to set up the mineralogical signature to trace their origin. Mineral composition of aerosol particles is investigated at five sites (Aksu, Dunhuang, Yulin, Tongliao and Changwu) during the intensive field campaign period of ACE-Asia. The results show that the Kaolinite (K) to Chlorite (C) ratio is sensitive to the regional origin of Asian dust. Western source areas (represent by Aksu) displayed the lowest K/ C ratio of 0.3 (in average), while it was found that to increase up to 0.70 (in average) as moving towards north source areas (represent by Yulin). By studying transported dust in a depositional area representative of the Chinese Loess Plateau, the usefulness of the K/C ratio to retrieve the origin of the dust by associating it with back air-mass trajectories is checked. Compared the mineralogical data between Asian dust and Sahara dust, it is shown that K/C ratio is also a good signature to identify the source areas on the global scale.