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1.
J Poult Sci ; 59(4): 384-391, 2022 Oct 25.
Artigo em Inglês | MEDLINE | ID: mdl-36348649

RESUMO

Amyloid fibrils, which are formed from aggregates of aberrant proteins, can cause various forms of amyloidosis (including Alzheimer's disease). Such disorders often occur in elderly populations and are suspected to be lifestyle related. Thus, it has been speculated that some foodstuffs could be beneficial for preventing amyloidosis. In this study, we determine whether fibril formation by the hen egg white lysozyme (HEWL) could be inhibited by conducting a thioflavin T assay followed by fluorescence and electron microscopy observations. The results demonstrated that four peptide specimens prepared by the hydrolysis of crude proteins from the egg white, egg yolk, chalazae, and eggshell membrane of hen eggs effectively inhibited HEWL fibril formation. Among the four specimens, peptides from chalazae exhibited the highest preventive ability. The superiority of chalaza peptides was also observed when fibril formation was assayed using a full-length human lysozyme and human amyloid ß peptide 1-42, which is the key factor for the development of Alzheimer's disease. Our study of the fibrillization of the human lysozyme also showed that metal ions (Zn2+, Ca2+, Co2+, Mn2+ and Al3+) promoted fibrillization, and their effects were abolished by the peptide specimens (especially by chalaza peptides). Thus, we conclude that chicken-egg proteins could be a convenient source of therapeutic materials for amyloidosis.

2.
Biosci Biotechnol Biochem ; 86(10): 1353-1361, 2022 Sep 23.
Artigo em Inglês | MEDLINE | ID: mdl-35948273

RESUMO

It is of interest to determine whether and how egg-white proteins are maintained in fertile eggs. We previously observed that egg-white ovalbumin attained high stability during embryogenesis. Herein, we observed that the total mass of egg white and that of its gross protein content showed a decrease according to the days of incubation. The total bacteriolytic activity also lowered, in accord with previous observations. We purified lysozyme from egg-white samples on several incubation days. These purified lysozyme proteins were observed to have enzymatic and bacteriolytic activities against Micrococcus lysodeikticus as well as growth-inhibition potency against Staphylococcus aureus. As the embryogenesis proceeded, the purified lysozyme showed changes in Km and Vmax, a small decrease in the denaturation temperature, and symptoms of an increase in surface hydrophobicity. These results indicate that the lysozyme protein maintained its enzymatic and antibacterial activities until the late period of incubation while undergoing slight conformational changes.


Assuntos
Galinhas , Muramidase , Animais , Antibacterianos/farmacologia , Galinhas/metabolismo , Clara de Ovo , Desenvolvimento Embrionário , Muramidase/metabolismo , Ovalbumina
3.
Mol Phylogenet Evol ; 173: 107519, 2022 08.
Artigo em Inglês | MEDLINE | ID: mdl-35577301

RESUMO

Sulawesi is a biodiversity hotspot for ricefishes (Adrianichthyidae), with many species endemic to the central part of this island in single ancient lakes or lake systems. Frequent vicariance by lake fragmentation since the Pliocene may be largely responsible for diversification in this family. In this study, we demonstrate that not only lacustrine species but also riverine species in this area are also deeply divergent even within a single river system. A mitochondrial phylogeny revealed that a ricefish population newly discovered from Cerekang River is sister to Oryzias dopingdopingensis Mandagi, Mokodongan, Tanaka, & Yamahira, another riverine species endemic to Doping-doping River. However, the Cerekang Oryzias was genetically isolated from O. dopingdopingensis, despite that Cerekang River and Doping-doping River share a connection across estuarine waters. This separation was supported by phylogenomic trees and population genetic structure analyses based on genome-wide single nucleotide polymorphisms. Coalescent-based demographic inference demonstrated that the ancestral population of these two riverine ricefishes had experienced a substantial population decrease and subsequently diverged into two sub-populations. Because the Cerekang Oryzias was also morphologically distinguished from O. dopingdopingensis, we described it as a new species, O. landangiensis. We infer that O. landangiensis and O. dopingdopingensis are of lake-origin and are relic species which were left in these rivers after the lake disappeared, and that they have lost their dispersal ability when inhabiting the ancient lake. The lost dispersal ability possibly contributed to the formation of the biodiversity hotspot for this fish group on this island.


Assuntos
Peixes , Rios , Animais , Peixes/genética , Indonésia , Lagos , Filogenia
4.
Food Nutr Res ; 662022.
Artigo em Inglês | MEDLINE | ID: mdl-35440936

RESUMO

Background: The consumption of Jerusalem artichoke has multiple beneficial effects against diabetes and obesity. Objective: The aim of this study was to determine the effect of a single administration of Jerusalem artichoke tubers on postprandial glycemia and the concentrations of incretin hormones in humans. Method: Grated Jerusalem artichoke was administered prior to a meal (Trial 1; white rice for prediabetic participants, n = 10). Dose-dependent effect of Jerusalem artichoke (Trial 2; white rice for prediabetic participants, n = 4) and effect prior to the fat-rich meal were also investigated (Trial 3; healthy participants, n = 5) in this pilot study. Circulating glucose, insulin, triglyceride, glucagon, active glucagon-like peptide-1 (GLP-1), and active glucose-dependent insulinotropic polypeptide (GIP) concentrations were subsequently measured in all the trials. Results: Jerusalem artichoke significantly reduced the glucose and GIP concentrations after the consumption of either meal in Trial 1 and Trial 3, whereas there were no differences in the insulin, glucagon, and active GLP-1 concentrations. Also, there was no significant difference in the triglyceride concentration after the ingestion of the fat-rich meal in Trial 3. The glucose and GIP-lowering effects were dose-dependent, and the consumption of at least 100 g of Jerusalem artichoke was required to have these effects in Trial 2. Conclusion: This study demonstrates that a single administration of Jerusalem artichoke tubers reduces postprandial glucose and active GIP concentrations in prediabetic and healthy individuals.

5.
Sci Rep ; 10(1): 4368, 2020 03 09.
Artigo em Inglês | MEDLINE | ID: mdl-32152422

RESUMO

Inorganic pyrophosphatase (PPase) catalyses the hydrolysis reaction of inorganic pyrophosphate to phosphates. Our previous studies showed that manganese (Mn) activated PPase from the psychrophilic bacterium Shewanella sp. AS-11 (Mn-Sh-PPase) has a characteristic temperature dependence of the activity with an optimum at 5 °C. Here we report the X-ray crystallography and electron paramagnetic resonance (EPR) spectroscopy structural analyses of Sh-PPase in the absence and presence of substrate analogues. We successfully determined the crystal structure of Mn-Sh-PPase without substrate and Mg-activated Sh-PPase (Mg-Sh-PPase) complexed with substrate analogue (imidodiphosphate; PNP). Crystallographic studies revealed a bridged water placed at a distance from the di-Mn centre in Mn-Sh-PPase without substrate. The water came closer to the metal centre when PNP bound. EPR analysis of Mn-Sh-PPase without substrate revealed considerably weak exchange coupling, whose magnitude was increased by binding of substrate analogues. The data indicate that the bridged molecule has weak bonds with the di-Mn centre, which suggests a 'loose' structure, whereas it comes closer to di-Mn centre by substrate binding, which suggests a 'well-tuned' structure for catalysis. Thus, we propose that Sh-PPase can rearrange the active site and that the 'loose' structure plays an important role in the cold adaptation mechanism.


Assuntos
Domínio Catalítico , Pirofosfatase Inorgânica/química , Modelos Moleculares , Sítios de Ligação , Cristalografia por Raios X , Espectroscopia de Ressonância de Spin Eletrônica , Pirofosfatase Inorgânica/metabolismo , Simulação de Dinâmica Molecular , Ligação Proteica , Conformação Proteica , Relação Estrutura-Atividade
6.
J Plant Res ; 132(5): 667-680, 2019 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-31368041

RESUMO

Mimosinase degrades the non-protein amino acid mimosine and is thought to have evolved from cystathionine ß-lyase (CBL) via gene duplication. However, no study has, to date, compared the molecular characteristics of mimosinase and CBL. We therefore cloned mimosinase and CBL from the Mimosoideae subfamily member Mimosa pudica (Mp) and explored the molecular relationship between mimosinase and CBL for the first time. The recombinant Mp mimosinase degraded both mimosine and cystathionine with a much higher turnover number (kcat) for mimosine compared with cystathionine, and Mp CBL utilized only cystathionine as a substrate. The critical residues implicated in the substrate binding of Arabidopsis thaliana CBL (Tyr-127, Arg-129, Tyr-181, and Arg-440) were highly conserved in both Mp mimosinase and CBL. However, homology modeling and molecular simulation of these enzymes predicted variations in the residues that interact with substrates. A mutation experiment on Mp mimosinase revealed that the disruption of a disulfide bond in the vicinity of the pyridoxal-5'-phosphate domain increased the enzyme's preference toward cystathionine. Treatment of Mp mimosinase with a disulfide-cleavage agent also decreased mimosinase activity. Furthermore, mutation near the conserved binding residue altered the substrate preference between mimosine and cystathionine. Molecular dynamics simulations of Mp mimosinase suggested a closer coordination of the residues that interact with mimosine at the active site compared with cystathionine, indicating a more compact pocket size for mimosine degradation. This study thus may provide new insights into the molecular diversification of CBL, a C-S lyase, into the C-N lyase mimosinase in the Mimosoideae subfamily.


Assuntos
Liases/genética , Mimosa/genética , Proteínas de Plantas/genética , Sequência de Aminoácidos , Liases/química , Liases/metabolismo , Mimosa/metabolismo , Filogenia , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Alinhamento de Sequência
7.
Physiol Plant ; 167(2): 264-275, 2019 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-30474293

RESUMO

We investigated changes in starch content and starch metabolic enzyme activities in developing and postharvest squash of distinct species, Cucurbita maxima and Cucurbita moschata, which accumulate high and low levels of starch, respectively. The total activity of starch phosphorylase in developing fruits significantly correlated (r = 0.99) to the amount of starch among Cucurbita species (C. maxima, C. moschata and C. pepo). Separable activity of a plastidial L-form phosphorylase in C. maxima fruit markedly increased corresponding with starch accumulation. We isolated two genes (CmPhoL1 and CmPhoH1) encoding an L-form and a cytosolic H-form phosphorylase from C. maxima fruit. The expression of CmPhoL1 in the fruit dramatically increased at the beginning of starch accumulation. Recombinant CmPhoL1 enzyme showed similar kinetic parameters in both glucan synthesis and phosphorolysis: this enzyme can catalyze the invertible reaction in vitro depending on the concentration of substrates. These results suggest that CmPhoL1 plays a role in the starch accumulation process during squash development, but the aid of other starch synthetic enzymes may be required for in vivo glucan synthesis reaction by CmPhoL1. An importance of plastidial starch phosphorylase in the starch accumulation in the fruit organ was indicated.


Assuntos
Cucurbita/enzimologia , Amido Fosforilase/metabolismo , Amido/metabolismo , Cucurbita/genética , Cucurbita/crescimento & desenvolvimento , Frutas/enzimologia , Frutas/genética , Frutas/crescimento & desenvolvimento , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Plastídeos/metabolismo , Amido Fosforilase/genética
8.
J Inequal Appl ; 2018(1): 97, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-29720845

RESUMO

In this article, we show two fundamental features of the restriction of Möbius operations to the real numbers, that is, a Cauchy type inequality and a criterion for convergence of series.

9.
BMC Genomics ; 18(1): 995, 2017 12 29.
Artigo em Inglês | MEDLINE | ID: mdl-29284410

RESUMO

BACKGROUND: Lipopolysaccharide (LPS) from Gram-negative bacteria cause innate immune responses in animals and plants. The molecules involved in LPS signaling in animals are well studied, whereas those in plants are not yet as well documented. Recently, we identified Arabidopsis AtLBR-2, which binds to LPS from Pseudomonas aeruginosa (pLPS) directly and regulates pLPS-induced defense responses, such as pathogenesis-related 1 (PR1) expression and reactive oxygen species (ROS) production. In this study, we investigated the pLPS-induced transcriptomic changes in wild-type (WT) and the atlbr-2 mutant Arabidopsis plants using RNA-Seq technology. RESULTS: RNA-Seq data analysis revealed that pLPS treatment significantly altered the expression of 2139 genes, with 605 up-regulated and 1534 down-regulated genes in WT. Gene ontology (GO) analysis on these genes showed that GO terms, "response to bacterium", "response to salicylic acid (SA) stimulus", and "response to abscisic acid (ABA) stimulus" were enriched amongst only in up-regulated genes, as compared to the genes that were down-regulated. Comparative analysis of differentially expressed genes between WT and the atlbr-2 mutant revealed that 65 genes were up-regulated in WT but not in the atlbr-2 after pLPS treatment. Furthermore, GO analysis on these 65 genes demonstrated their importance for the enrichment of several defense-related GO terms, including "response to bacterium", "response to SA stimulus", and "response to ABA stimulus". We also found reduced levels of pLPS-induced conjugated SA glucoside (SAG) accumulation in atlbr-2 mutants, and no differences were observed in the gene expression levels in SA-treated WT and the atlbr-2 mutants. CONCLUSION: These 65 AtLBR-2-dependent up-regulated genes appear to be important for the enrichment of some defense-related GO terms. Moreover, AtLBR-2 might be a key molecule that is indispensable for the up-regulation of defense-related genes and for SA signaling pathway, which is involved in defense against pathogens containing LPS.


Assuntos
Proteínas de Arabidopsis/fisiologia , Arabidopsis/genética , Regulação da Expressão Gênica de Plantas , Lipopolissacarídeos/farmacologia , Transcriptoma , Arabidopsis/efeitos dos fármacos , Arabidopsis/metabolismo , Proteínas de Arabidopsis/genética , Perfilação da Expressão Gênica , Glucosídeos/metabolismo , Mutação , Pseudomonas aeruginosa , Salicilatos/metabolismo , Ácido Salicílico/farmacologia , Análise de Sequência de RNA
10.
Plant Cell Environ ; 39(10): 2260-75, 2016 10.
Artigo em Inglês | MEDLINE | ID: mdl-27425779

RESUMO

Isoprene emission from plants is very sensitive to environmental temperature both at short-term and long-term scales. Our previous study demonstrated suppression of isoprene emission by cold temperatures in a high emitting tropical tree Ficus septica and revealed a strong correlation of emission to isoprene synthase (IspS) protein levels. When challenged with decreasing daily temperatures from 30 to 12 °C, F. septica completely stopped isoprene emission at 12 °C, only to recover on the second day after re-exposure to 30 °C. Here, we explored this regulation of isoprene emission in response to environmental temperature by a comprehensive analysis of transcriptome data, gene expressions and metabolite pools of the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. MEP pathway genes and metabolites dynamics did not support substrate-level limitations as major control over observed basal emission, but transcriptome data, network inferences and putative regulatory elements on IspS promoter suggested transcriptional regulation of IspS gene through circadian rhythm and phytohormone signalling processes. Expression levels of 29 genes involved in these pathways were examined by quantitative real-time PCR. We propose that temperature controls over basal isoprene emission at a time-scale of hours to few days are regulated by phytohormone-mediated transcriptional modulation of IspS gene under synchronization by the circadian clock.


Assuntos
Butadienos/metabolismo , Ficus/fisiologia , Hemiterpenos/metabolismo , Redes e Vias Metabólicas , Pentanos/metabolismo , Temperatura , Ritmo Circadiano , Ficus/genética , Ficus/metabolismo , Perfilação da Expressão Gênica , Regulação da Expressão Gênica de Plantas , Fotossíntese , Reguladores de Crescimento de Plantas/genética , Reguladores de Crescimento de Plantas/metabolismo , Reguladores de Crescimento de Plantas/fisiologia , Proteínas de Plantas/química , Proteínas de Plantas/genética , Proteínas de Plantas/fisiologia , Análise de Sequência de DNA , Estresse Fisiológico
11.
Sci Rep ; 6: 27527, 2016 06 08.
Artigo em Inglês | MEDLINE | ID: mdl-27273538

RESUMO

Lipopolysaccharide (LPS) is a major constituent of the outer membrane of Gram-negative bacteria and acts as a pathogen-associated molecular pattern that triggers immune responses in both plants and animals. LPS-binding protein (LBP) and bactericidal/permeability-increasing protein (BPI), which bind to LPS and play important roles in immunity of mammals, have been well studied. However, the molecule contributing to LPS binding in plants is mostly unknown. The Arabidopsis genome carries two genes encoding LBP/BPI-related proteins which we designated as AtLBP/BPI related-1 (AtLBR-1) and AtLBP/BPI related-2 (AtLBR-2). We found that their N-terminal domains were co-purified with cell wall-derived LPS when expressed in E. coli. Since this finding implied the direct binding of AtLBRs to LPS, we also confirmed binding by using LPS-free AtLBRs and purified LPS. AtLBRs directly bind to both rough and smooth types of LPS. We also demonstrated that LPS-treated atlbr mutant Arabidopsis exhibit a significant delay of induction of defence-related gene pathogenesis-related 1 (PR1) but no other PR genes. Furthermore, LPS-treated atlbr mutants showed defects in reactive oxygen species (ROS) generation. These results demonstrate that, as well as LBP and BPI of mammals, AtLBRs also play an important role in the LPS-induced immune response of plants.


Assuntos
Proteínas de Fase Aguda/genética , Peptídeos Catiônicos Antimicrobianos/genética , Proteínas de Arabidopsis/genética , Proteínas Sanguíneas/genética , Proteínas de Transporte/genética , Glucana Endo-1,3-beta-D-Glucosidase/genética , Glicoproteínas de Membrana/genética , Peptídeos Catiônicos Antimicrobianos/imunologia , Arabidopsis/genética , Arabidopsis/imunologia , Arabidopsis/microbiologia , Proteínas de Arabidopsis/imunologia , Proteínas Sanguíneas/imunologia , Escherichia coli/imunologia , Escherichia coli/patogenicidade , Genoma de Planta/imunologia , Glucana Endo-1,3-beta-D-Glucosidase/imunologia , Lipopolissacarídeos/genética , Lipopolissacarídeos/imunologia , Proteínas de Membrana/genética , Proteínas de Membrana/imunologia , Moléculas com Motivos Associados a Patógenos/imunologia , Imunidade Vegetal
12.
Protein J ; 34(4): 275-83, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-26242868

RESUMO

Nucleoside diphosphate kinase isolated from psychrophilic Pseudoalteromonas sp. AS-131 (ASNDK) was expressed in Escherichia coli and purified to homogeneity. Comparing to mesophilic NDK isolated from Pseudomonas aeruginosa, ASNDK exhibited highly elevated thermolability: E. coli expression at 37 °C as a denatured insoluble form, 30 °C lower optimum temperature of enzymatic activity, and greatly reduced heat stability with 38 °C lower Tm value, fourfold higher Km and reduced Kcat/Km by 0.4-fold upon reaction temperature increase from 20 to 37 °C. The subunit structure of ASNDK was suggested to be dimer, as in NDKs isolated from moderate halophiles.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Núcleosídeo-Difosfato Quinase/química , Núcleosídeo-Difosfato Quinase/metabolismo , Pseudoalteromonas/genética , Água do Mar/microbiologia , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Estabilidade Enzimática , Temperatura Alta , Modelos Moleculares , Dados de Sequência Molecular , Núcleosídeo-Difosfato Quinase/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
13.
Protein J ; 33(4): 313-22, 2014 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-24801996

RESUMO

Acetate kinase catalyzes the reversible magnesium-dependent phosphoryl transfer from ATP to acetate to form acetyl phosphate and ADP. Here, we report functional and some structural properties of cold-adapted psychrotrophic enzyme; acetate kinase with those from mesophilic counterpart in Escherichia coli K-12. Recombinant acetate kinase from Shewanella sp. AS-11 (SAK) and E. coli K-12 (EAK) were purified to homogeneity following affinity chromatography and followed by Super Q column chromatography as reported before [44]. Both purified enzymes are shared some of the common properties such as (similar molecular mass, amino acid sequence and similar optimum pH), but characterized shift in the apparent optimum temperature of specific activity to lower temperature as well as by a lower thermal stability compared with EAK. The functional comparisons reveal that SAK is a cold adapted enzyme, having a higher affinity to acetate than EAK. In the acetyl phosphate and ADP-forming direction, the catalytic efficiency (k(cat)/K(m)) for acetate was 8.0 times higher for SAK than EAK at 10 °C. The activity ratio of SAK to EAK was increased with decreasing temperature in both of the forward and backward reactions. Furthermore, the activation energy, enthalpy and entropy in both reaction directions that catalyzed by SAK were lower than those catalyzed by EAK. The model structure of SAK showed the significantly reduced numbers of salt bridges and cation-pi interactions as compared with EAK. These results suggest that weakening of intramolecular electrostatic interactions of SAK is involved in a more flexible structure which is likely to be responsible for its cold adaptation.


Assuntos
Acetato Quinase/química , Acetato Quinase/metabolismo , Temperatura Baixa , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Shewanella/enzimologia , Acetato Quinase/genética , Estabilidade Enzimática , Escherichia coli , Cinética , Modelos Moleculares , Proteínas Recombinantes/genética , Shewanella/genética , Shewanella/fisiologia , Termodinâmica
14.
Prep Biochem Biotechnol ; 44(5): 480-92, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24397719

RESUMO

In the presence of divalent cations, inorganic pyrophosphatase is activated to hydrolyze inorganic pyrophosphate to inorganic phosphate. Here, we clone, express, purify, and characterize inorganic pyrophosphatase from the psychrophilic Shewanella sp. AS-11 (Sh-PPase). The recombinant Sh-PPase was expressed in Escherichia coli BL21 (DE3) at 20°C using pET16b as an expression vector and purified from the cell extracts by a combination of ammonium sulfate fractionation and anion-exchange chromatography. Sh-PPase was found to be a family II PPase with a subunit molecular mass of 34 kD that preferentially utilizes Mn²âº over Mg²âº ions for activity. The functional characteristics of Sh-PPase, such as activity, temperature dependency, and thermal inactivation, were greatly influenced by manganese ions. Manganese ion activation increased the enzyme's activity at low temperatures; therefore, it was required to gain the cold-adapted characteristics of Sh-PPase.


Assuntos
Pirofosfatase Inorgânica/genética , Pirofosfatase Inorgânica/isolamento & purificação , Shewanella/enzimologia , Cátions Bivalentes/metabolismo , Clonagem Molecular , Temperatura Baixa , Ativação Enzimática , Estabilidade Enzimática , Escherichia coli/genética , Infecções por Bactérias Gram-Negativas/microbiologia , Pirofosfatase Inorgânica/química , Pirofosfatase Inorgânica/metabolismo , Magnésio/metabolismo , Manganês/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Shewanella/química , Shewanella/genética , Especificidade por Substrato
15.
Physiol Plant ; 150(2): 238-51, 2014 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23782392

RESUMO

Four cDNA clones (SlArf/Xyl1-4) encoding α-l-arabinofuranosidase/ß-xylosidase belonging to glycoside hydrolase family 3 were obtained from tomato (Solanum lycopersicum) fruit. SlArf/Xyl1 was expressed in various organs. Its level was particularly high in flower and leaves but low in fruit. SlArf/Xyl3 was highly expressed in flower. On the contrary, SlArf/Xyl2 and 4 were expressed in early developmental stage in various organs. Comparison with SlArf/Xyl4, SlArf/Xyl2 expression was observed in earlier stages. The active recombinant proteins were obtained by using BY-2 tobacco (Nicotiana tabacum) suspension cultured cells. The SlArf/Xyl1 and 2 recombinant proteins showed a bi-functional activity of α-l-arabinofuranosidase/ß-xylosidase while the SlArf/Xyl4 protein possessed a ß-xylosidase activity predominantly. Neither enzyme activities were detected for the SlArf/Xyl3 protein under the same conditions. Although SlArf/Xyl2 possessed a bi-functional activity, it preferentially hydrolyzed arabinosyl residues from tomato hemicellulosic polysaccharides. Antisense suppression of SlArf/Xyl2 resulted in no apparent changes in the enzyme activities, monosaccharide composition or fruit phenotype. Increment of a family 51 α-l-arabinofuranosidase expression rather than that of family 3 resulted in a restoring the activity in SlArf/Xyl2-suppressed fruit. The ability of recombinant SlArf/Xyl2 to hydrolyze both arabinan and arabinoxylan is nearly identical to that of α-l-arabinofuranosidases belonging to family 51. Our results suggested that BY-2 cells are a useful expression system for obtaining active cell wall hydrolyzing enzymes. In addition, an α-l-arabinofuranosidase activity derived from SlArf/Xyl2 would be essential in young organ development and the action of the enzyme could be restored by the other enzyme belonging to a different family under a defective condition.


Assuntos
Glicosídeo Hidrolases/metabolismo , Nicotiana/citologia , Nicotiana/genética , RNA Antissenso/metabolismo , Solanum lycopersicum/enzimologia , Xilosidases/metabolismo , Arabinose/metabolismo , Células Cultivadas , Clonagem Molecular , DNA Complementar/genética , Frutas/enzimologia , Frutas/genética , Frutas/crescimento & desenvolvimento , Perfilação da Expressão Gênica , Regulação da Expressão Gênica no Desenvolvimento , Regulação da Expressão Gênica de Plantas , Isoenzimas/metabolismo , Solanum lycopersicum/genética , Solanum lycopersicum/crescimento & desenvolvimento , Fenótipo , Filogenia , Plantas Geneticamente Modificadas , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Especificidade por Substrato , Suspensões , Xilose/metabolismo
16.
Protein J ; 33(1): 11-7, 2014 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-24363149

RESUMO

Mn²âº ions influence the activity, temperature dependence, and thermostability of the psychrophilic Shewanella-PPase (Sh-PPase), and are required to function in cold environments. The functional characteristics of Sh-PPase on activation with Mn²âº ions are possibly related to conformational changes in the molecule. In this study, conformational changes of Sh-PPase on activation with Mn²âº ions were analyzed in solution by fluorescence spectroscopy analysis of intrinsic tryptophan residues, 1-anilino-8-naphthalene sulfonate fluorescence, and circular dichroism spectroscopy. For Sh-PPase, Mn²âº ions did not affect the flexibility of the tryptophan residues and secondary structure of the enzyme. However, the microenvironment of the tryptophan residues and surface area of Sh-PPase were more hydrophilic on activation with Mn²âº ions. These results indicate that activation with Mn²âº ions causes conformational changes around the aromatic amino acid residues and affects the hydrophobicity of the enzyme surface, which results in conformational changes. Substrate-induced conformational changes reflect that metal-free Sh-PPase in solution indicated an open structure and will be a close structure when binding substrate. In combination of our spectroscopic analyses on Sh-PPase, it can be concluded that activation with Mn²âº ions changes some conformation of Sh-PPase molecule in solution.


Assuntos
Pirofosfatase Inorgânica/química , Íons/química , Manganês/química , Conformação Proteica , Sequência de Aminoácidos , Sítios de Ligação , Estrutura Secundária de Proteína , Shewanella/química , Shewanella/enzimologia
17.
Int J Biol Sci ; 9(2): 219-27, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23459392

RESUMO

Some of the lysozyme mutants in humans cause systemic amyloidosis. Hen egg white lysozyme (HEWL) has been well studied as a model protein of amyloid fibrils formation. We previously identified an amyloid core region consisting of nine amino acids (designated as the K peptide), which is present at 54-62 in HEWL. The K peptide, with tryptophan at its C- terminus, has the ability of self-aggregation. In the present work we focused on its structural properties in relation to the formation of fibrils. The K peptide alone formed definite fibrils having ß-sheet structures by incubation of 7 days under acidic conditions at 37°C. A substantial number of fibrils were generated under this pH condition and incubation period. Deletion and substitution of tryptophan in the K peptide resulted in no formation of fibrils. Tryptophan 62 in lysozyme was suggested to be especially crucial to forming amyloid fibrils. We also show that amyloid fibrils formation of the K peptide requires not only tryptophan 62 but also a certain length containing hydrophobic amino acids. A core region is involved in the significant formation of amyloid fibrils of lysozyme.


Assuntos
Amiloide/genética , Modelos Moleculares , Muramidase/genética , Oligopeptídeos/genética , Estrutura Secundária de Proteína , Aminoácidos/genética , Animais , Biofísica , Galinhas , Fluorescência , Humanos , Concentração de Íons de Hidrogênio , Cinética , Microscopia de Força Atômica , Microscopia Eletrônica de Transmissão , Temperatura
18.
J Fluoresc ; 23(3): 407-15, 2013 May.
Artigo em Inglês | MEDLINE | ID: mdl-23319009

RESUMO

The structural feature of unfolding intermediate of pokeweed anti-viral protein (PAP) was characterized using time-resolved fluorescence spectroscopic methods to elucidate protein folding/unfolding process. CD and fluorescence spectra consistently demonstrated that the unfolding of PAP completed at 4 M of guanidine hydrochloride (GuHCl). The fluorescence resonance energy transfer (FRET) and time-resolve fluorescence depolarization analysis of Trp208 and Trp237 located in the C-terminal domain of PAP suggested that peculiar unfolding intermediate populated before reaching to the unfolding state. The FRET distance of Trp237 to Tyr182 was extended to more than 28 Å with keeping the compact conformation in the unfolding intermediate state populated in the presence of 2 M GuHCl. On the other hand, Trp208 maintained the energy transfer pair with Tyr72 near the active site, although the rotational freedom was increased a little. There results suggest that the most distinguished structural feature of the unfolding intermediate of PAP is the separation of C-terminal domain from N-terminal domain. FRET and fluorescence depolarization studies also showed that C-terminal domain would be more separated to liberate the segmental motions of Trp208 and Trp237 distinctly at the unfolding state.


Assuntos
Desdobramento de Proteína , Proteínas Inativadoras de Ribossomos Tipo 1/química , Transferência de Energia , Polarização de Fluorescência , Modelos Moleculares , Estrutura Secundária de Proteína , Espectrometria de Fluorescência , Fatores de Tempo
19.
Protein J ; 31(4): 337-44, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22481532

RESUMO

The acetate kinase from the Antarctic psychrophilic Shewanella sp. AS-11 (SAK) has a significantly higher catalytic efficiency at low temperatures when compared with that from mesophilic Escherichia coli K-12 (EAK). To examine the stability and conformational flexibility of SAK and EAK, steady state intrinsic fluorescence studies were performed. EAK contains only one Trp at a position 46, while SAK contains two Trps at positions 46 and 388. From the fluorescence emission spectra, quenching with acrylamide, Cs(+) and I(-) at different temperatures and denaturation with guanidine-HCl, it was revealed that the SAK bears more flexible and unstable structure than that of EAK. Substrate-induced conformational changes reflect that SAK reached transition state through more conformational changes than EAK. In combination of our thermodynamic studies on the enzymatic reaction and present research findings, it can be concluded that these structural features of SAK may contribute to its high catalytic efficiency at low temperatures.


Assuntos
Acetato Quinase/química , Proteínas de Bactérias/química , Escherichia coli K12/enzimologia , Shewanella/enzimologia , Acetato Quinase/genética , Acetato Quinase/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Estabilidade Enzimática , Escherichia coli K12/química , Escherichia coli K12/genética , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Cinética , Dados de Sequência Molecular , Conformação Proteica , Estrutura Secundária de Proteína , Shewanella/química , Shewanella/genética , Especificidade por Substrato
20.
Biochim Biophys Acta ; 1824(4): 620-6, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22326746

RESUMO

A comparison of the primary structures among psychrophilic, mesophilic, and thermophilic subtilases revealed that the turn between the ß8 and ß9 strands (ß8-ß9 turn, BPN' numbering) of psychrophilic subtilases are more flexible than those of their mesophilic and thermophilic counterparts. To investigate the relationship between structure of this turn and enzyme activity as well as thermostability of mesophilic subtilisin Carlsberg (sC), we analyzed 6 mutants of sC with a single, double, or triple Gly or Ala substitutions for Pro(210)Thr(211)Asn(212) at the ß8-ß9 turn. Among the single Gly substitutions, the P210G substitution most significantly (1.5-fold) increased the specific activity on N-succinyl-Ala-Ala-Pro-Phe-p-nitroanilide (AAPF) substrate and 12-fold decreased the thermostability. All mutants tested showed the increased k(cat) for the AAPF substrate and reduced thermostability compared with the wild-type sC. The k(cat) values of the P210G, P210G/T211G, and P210G/T211G/N212G mutants were 1.5-, 1.7-, and 1.8-fold higher than that of the wild-type sC. There were significant positive correlations between k(cat) and thermal inactivation rates as well as k(cat) and K(m) of the wild-type and mutants. These results demonstrate that the structure of ß8-ß9 turn, despite its distance from the active site, has significant effects on the catalytic rate and thermostability of sC through a global network of intramolecular interactions and suggest that the lack of flexibility of this turn stabilizes the wild-type sC against thermal inactivation in compensation for some loss of catalytic activity.


Assuntos
Alanina/genética , Bacillus/enzimologia , Proteínas de Bactérias/química , Glicina/genética , Subtilisinas/química , Alanina/química , Motivos de Aminoácidos , Sequência de Aminoácidos , Substituição de Aminoácidos , Asparagina/química , Asparagina/genética , Proteínas de Bactérias/genética , Biocatálise , Domínio Catalítico , Estabilidade Enzimática , Glicina/química , Cinética , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Peptídeos/química , Prolina/química , Prolina/genética , Proteólise , Homologia de Sequência de Aminoácidos , Subtilisinas/genética , Treonina/química , Treonina/genética
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