Global Dynamics of the Stationary M2 Mode-1 Internal Tide.

A reduced-physics model is employed at 1/25° to 1/100° global resolution to determine (a) if linear dynamics can reproduce the observed low-mode M2 internal tide, (b) internal-tide sensitivity to bathymetry, stratification, surface tides, and dissipation parameterizations, and (c) the amount of power transferred to the nonstationary internal tide. The simulations predict 200 GW of mode-1 internal-tide generation, consistent with a general circulation model and semianalytical theory. Mode-1 energy is sensitive to damping, but a simulation using parameterizations for wave drag and wave-mean interaction predicts 84% of satellite observed sea-surface height amplitude variance on a 1° × 1° grid. The simulation energy balance indicates that 16% of stationary mode-1 energy is scattered to modes 2-4 and negligible energy propagates onto the shelves. The remaining 84% of energy is lost through parameterizations for high-mode scattering over rough topography (54%) and wave-mean interactions that transfer energy to the nonstationary internal tide (29%).

Deep-ocean mixing driven by small-scale internal tides.

Turbulent mixing in the ocean is key to regulate the transport of heat, freshwater and biogeochemical tracers, with strong implications for Earth's climate. In the deep ocean, tides supply much of the mechanical energy required to sustain mixing via the generation of internal waves, known as internal tides, whose fate-the relative importance of their local versus remote breaking into turbulence-remains uncertain. Here, we combine a semi-analytical model of internal tide generation with satellite and in situ measurements to show that from an energetic viewpoint, small-scale internal tides, hitherto overlooked, account for the bulk (>50%) of global internal tide generation, breaking and mixing. Furthermore, we unveil the pronounced geographical variations of their energy proportion, ignored by current parameterisations of mixing in climate-scale models. Based on these results, we propose a physically consistent, observationally supported approach to accurately represent the dissipation of small-scale internal tides and their induced mixing in climate-scale models.

Climate Process Team on Internal Wave-Driven Ocean Mixing.

Diapycnal mixing plays a primary role in the thermodynamic balance of the ocean and, consequently, in oceanic heat and carbon uptake and storage. Though observed mixing rates are on average consistent with values required by inverse models, recent attention has focused on the dramatic spatial variability, spanning several orders of magnitude, of mixing rates in both the upper and deep ocean. Away from ocean boundaries, the spatio-temporal patterns of mixing are largely driven by the geography of generation, propagation and dissipation of internal waves, which supply much of the power for turbulent mixing. Over the last five years and under the auspices of US CLIVAR, a NSF- and NOAA-supported Climate Process Team has been engaged in developing, implementing and testing dynamics-based parameterizations for internal-wave driven turbulent mixing in global ocean models. The work has primarily focused on turbulence 1) near sites of internal tide generation, 2) in the upper ocean related to wind-generated near inertial motions, 3) due to internal lee waves generated by low-frequency mesoscale flows over topography, and 4) at ocean margins. Here we review recent progress, describe the tools developed, and discuss future directions.

The K5 lyase KflA combines a viral tail spike structure with a bacterial polysaccharide lyase mechanism.

K5 lyase A (KflA) is a tail spike protein (TSP) encoded by a K5A coliphage, which cleaves K5 capsular polysaccharide, a glycosaminoglycan with the repeat unit [-4)-betaGlcA-(1,4)- alphaGlcNAc(1-], displayed on the surface of Escherichia coli K5 strains. The crystal structure of KflA reveals a trimeric arrangement, with each monomer containing a right-handed, single-stranded parallel beta-helix domain. Stable trimer formation by the intertwining of strands in the C-terminal domain, followed by proteolytic maturation, is likely to be catalyzed by an autochaperone as described for K1F endosialidase. The structure of KflA represents the first bacteriophage tail spike protein combining polysaccharide lyase activity with a single-stranded parallel beta-helix fold. We propose a catalytic site and mechanism representing convergence with the syn-beta-elimination site of heparinase II from Pedobacter heparinus.