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1.
Soft Matter ; 17(11): 3137-3143, 2021 Mar 21.
Artigo em Inglês | MEDLINE | ID: mdl-33600543

RESUMO

While isotropic in-plane swelling problems for thin elastic sheets have been studied extensively in recent years, many shape-programmable materials, including nematic solids and 3D-printed structures, are anisotropic, as are most industrial sheet materials. In this theoretical work, we consider central swelling and shrinkage of plates of aspect ratio and material properties relevant to the manufacture of engineered wood composite panels in which both in-plane swelling and material stiffness are highly orthotropic, leading to multiple separations in energy scales. With transverse swelling in the soft direction, and gradients in the stiff direction, the warped plates adopt two distinct types of configurations, axisymmetric and twisted, which we illustrate with toy models. We employ a two-parameter family of isometries to embed the metric programmed by the swelling, thus reducing the problem to one of minimizing bending energy alone. A simple argument is seen to closely predict averaged axisymmetric curvatures. While purely cylindrical shapes are unobtainable by pure in-plane swelling, they can be closely approximated in a highly anisotropic system. However, anisotropy can favor twisting, and breaks a degenerate soft deformation mode associated with minimal surfaces in isotropic materials. Bifurcations from axisymmetric to twisted shapes can be induced by anisotropy or by certain attributes of a central shrinkage profile. Finally, we note how our findings indicate practical limitations on the diagnosis of moisture inhomogeneities in manufactured panels by observation of warped conformations, due to the sensitivity of the qualitative response to specifics of the profile.

2.
Soft Matter ; 15(11): 2411-2417, 2019 Mar 13.
Artigo em Inglês | MEDLINE | ID: mdl-30778465

RESUMO

The choice of elastic energies for thin plates and shells is an unsettled issue with consequences for much recent modeling of soft matter. Through consideration of simple deformations of a thin body in the plane, we demonstrate that four bulk isotropic quadratic elastic theories have fundamentally different predictions with regard to bending behavior. At finite thickness, these qualitative effects persist near the limit of mid-surface isometry, and not all theories predict an isometric ground state. We discuss how certain kinematic measures that arose in early studies of rod mechanics lead to coherent definitions of stretching and bending, and promote the adoption of these quantities in the development of a covariant theory based on stretches rather than metrics.

3.
Int J Artif Organs ; 26(11): 1015-31, 2003 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-14708831

RESUMO

Thousands of pediatric patients suffering from cardiomyopathy or single ventricular physiologies secondary to debilitating heart defects may benefit from long-term mechanical circulatory support due to the limited number of donor hearts available. This article presents the initial design of a fully implantable centrifugal pediatric ventricular assist device (PVAD) for 2 to 12 year olds. Conventional pump design equations, including a nondimensional scaling approach, enabled performance estimations of smaller scale versions (25 mm and 35 mm impeller diameters) of our adult support VAD. Based on this estimated performance, a computational model of the PVAD with a 35 mm impeller diameter was generated. Employing computational fluid dynamics (CFD) software, the flow paths through the PVAD and overall performance were analyzed for steady state flow conditions. The numerical simulations involved flow rates of 2 to 5 LPM for rotational speeds of 2750 to 3250 RPM and incorporated a k-epsilon fluid turbulence model with a logarithmic wall function to characterize near-wall flow conditions. The CFD results indicated best efficiency points ranging from 25% to 28%, which correlate well with typical values of blood pumps. The results further demonstrated that the pump could deliver 2 to 5 LPM at 70 to 95 mmHg for desired physiologic conditions in resting 2 to 12 year olds. Scalar stress levels remained below 300 Pa, thereby signifying potentially low levels of hemolysis. Several flow regions in the pump exhibited signs of vortices, retrograde flow, and stagnation points, which require optimization and further study. This CFD model represents a reasonable starting point for future model enhancements, leading to prototype manufacturing and experimental validation.


Assuntos
Coração Auxiliar , Análise Numérica Assistida por Computador , Desenho de Prótese , Criança , Pré-Escolar , Biologia Computacional , Hemorreologia , Humanos , Teste de Materiais , Modelos Cardiovasculares , Rotação
4.
Artif Organs ; 26(11): 971-3, 2002 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-12406154

RESUMO

Methods of flow visualization using oil streaking are established techniques for investigating surface shear and near wall flow patterns. Recent studies have used an array of oil dots on a surface which form streaks when exposed to shear forces. This method is generally qualitative, but it is possible to make quantitative measurements of the shear if the oil streaks have been calibrated. This paper presents the application of a quantitative oil streak method to the HeartQuest left ventricular assist device (LVAD). An array of dots was applied to the top housing of the pump, yielding quantitative values for the shear and qualitative patterns of the near wall flow in that region. The results were used to locate regions likely to promote thrombosis, such as stagnation points or recirculation regions. Regions of high shear, where hemolysis might occur, also can be identified with this method. In addition to being an important design technique, quantitative oil streaking assisted in the verification of computational fluid dynamics results within the HeartQuest LVAD.


Assuntos
Doenças Cardiovasculares/terapia , Coração Auxiliar/efeitos adversos , Óleos , Reologia/métodos , Trombose/etiologia , Doenças Cardiovasculares/fisiopatologia , Estudos de Avaliação como Assunto , Hemólise/fisiologia , Humanos , Modelos Cardiovasculares , Resistência ao Cisalhamento , Trombose/fisiopatologia
5.
ASAIO J ; 47(4): 406-11, 2001.
Artigo em Inglês | MEDLINE | ID: mdl-11482495

RESUMO

The third prototype of a continuous flow ventricular assist device (CFVAD3) is being developed and tested for implantation in humans. The blood in the pump flows through a fully shrouded four-bladed impeller (supported by magnetic bearings) and through small clearance regions on either side of the impeller. Measurements of velocities using particle image velocimetry of a fluid with the same viscosity as blood have been made in one of these clearance regions. Particle image velocimetry is a technique that measures the instantaneous velocity field within an illuminated plane of the fluid field by scattering light from particles added to the fluid. These measurements have been used to improve understanding of the fluid dynamics within these critical regions, which are possible locations of both high shear and stagnation, both of which are to be avoided in a blood pump. Computational models of the pump exist and these models are currently being used to aid in the design of future prototypes. Among other things, these models are used to predict the potential for hemolysis and thrombosis. Measurements of steady flow at two operating speeds and flow rates are presented. The measurements are compared with the computed solutions to validate and refine, where necessary, the existing computational models.


Assuntos
Velocidade do Fluxo Sanguíneo , Coração Auxiliar , Humanos , Modelos Cardiovasculares , Desenho de Prótese , Reologia
6.
ASAIO J ; 46(4): 486-94, 2000.
Artigo em Inglês | MEDLINE | ID: mdl-10926152

RESUMO

The third prototype of a continuous flow ventricular assist device (CF3) is being developed and tested for implantation in humans. The blood in the pump flows through a fully shrouded four bladed impeller (supported by magnetic bearings) and through small clearance regions on either side of the impeller. Computational fluid dynamics (CFD) solutions for this flow have been obtained by using TascFlow, a software package available from AEA Technology, UK. These flow solutions have been used to estimate the shear stresses on the blood in the pump and, hence, to minimize hemolysis. In addition, the solutions are informative for achieving a design that will provide good washing of the blood to minimize the possibility of stagnation points that can lead to thrombosis. This study presents numerical studies of these phenomena in the CF3. The calculated shear rate results are compared with values published in the open literature. The comparisons indicate that hemolysis will not be a problem with CF3, which is in agreement with preliminary experimental measurements. Flow studies are being conducted to determine the optimal size of the clearance regions.


Assuntos
Coração Auxiliar , Velocidade do Fluxo Sanguíneo , Humanos , Estresse Mecânico
7.
Artif Organs ; 24(6): 492-500, 2000 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-10886072

RESUMO

The CFVAD3 is the third prototype of a continuous flow ventricular assist device being developed for implantation in humans. The pump consists of a fully shrouded 4-blade impeller supported by magnetic bearings. On either side of this suspended rotating impeller is a small clearance region through which the blood flows. The spacing and geometry of these clearance regions are very important to the successful operation of this blood pump. Computational fluid dynamics (CFD) solutions for this flow were obtained using TascFlow, a software package available from AEA Technology, U.K. Flow in these clearance regions was studied parametrically by varying the size of the clearance, the blood flow rate into the pump, and the rotational speed of the pump. The numerical solutions yield the direction and magnitude of the flow and the dynamic pressure. Experimentally measured pump flow rates are compared to the numerical study. The results of the study provide guidance for improving pump efficiency. It is determined that current clearances can be significantly reduced to improve pump efficiency without negative impacts.


Assuntos
Coração Auxiliar , Hemorreologia , Simulação por Computador , Desenho de Equipamento , Estudos de Avaliação como Assunto , Coração Artificial , Humanos , Magnetismo
8.
Artif Organs ; 24(5): 377-85, 2000 May.
Artigo em Inglês | MEDLINE | ID: mdl-10848679

RESUMO

A computational fluid dynamics study of blood flow in the continuous flow ventricular assist device, Prototype No. 3 (CFVAD3), which consists of a 4 blade shrouded impeller fully supported in magnetic bearings, was performed. This study focused on the regions within the pump where return flow occurs to the pump inlet, and where potentially damaging shear stresses and flow stagnation might occur: the impeller blade passages and the narrow gap clearance regions between the impeller-rotor and pump housing. Two separate geometry models define the spacing between the pump housing and the impeller's hub and shroud, and a third geometry model defines the pump's impeller and curved blades. The flow fields in these regions were calculated for various operating conditions of the pump. Pump performance curves were calculated, which compare well with experimentally obtained data. For all pump operating conditions, the flow rates within the gap regions were predicted to be toward the inlet of the pump, thus recirculating a portion of the impeller flow. Two smaller gap clearance regions were numerically examined to reduce the recirculation and to improve pump efficiency. The computational and geometry models will be used in future studies of a smaller pump to determine increased pump efficiency and the risk of hemolysis due to shear stress, and to insure the washing of blood through the clearance regions to prevent thrombosis.


Assuntos
Coração Auxiliar , Hemorreologia , Simulação por Computador , Desenho de Equipamento , Previsões , Hemólise , Humanos , Magnetismo/instrumentação , Teste de Materiais , Modelos Biológicos , Modelos Teóricos , Reologia , Fatores de Risco , Rotação , Estresse Mecânico , Propriedades de Superfície , Trombose/prevenção & controle
10.
Artif Organs ; 23(8): 769-73, 1999 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-10463505

RESUMO

A numerical analysis was performed to predict the shear stresses, flow rates, and the velocity profiles in a continuous flow ventricular assist device, the CFVAD3. The problem was modeled as a rotating disk over a stationary disk. A variety of clearances was tested for the CFVAD3 coupled with a range of rotational speeds and pressure gradients. Velocity fields were generated using solutions obtained with FLOW3D software (AEA Technology, Pittsburgh, PA, U.S.A.) Analysis of these solutions shows that the pressure differential effect has a stronger influence on the flow than the rotational effect of the impeller Ekman layer. The predicted shear stresses reflect these changes in the volume flow rates and the speeds shown in the velocity profiles. Based on the predictions of the software, the optimum clearance and rotational speed were chosen. The conclusion is that a speed in the range of 2,200-2,400 rpm should be chosen depending on the efficiency of the pump.


Assuntos
Velocidade do Fluxo Sanguíneo , Coração Auxiliar , Hemorreologia , Simulação por Computador , Desenho de Equipamento
11.
Int J Artif Organs ; 22(12): 827-36, 1999 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-10654880

RESUMO

A very small centrifugal pump, fully supported by magnetic bearings, is being developed for use as a ventricular assist device to be implanted in humans. In this paper, we apply computational fluid dynamics to model the blood flow to aid in the design of the ventricular assist device. The flow of blood through the pump has been modeled using computational fluid dynamics (CFD) software that is commercially available from AEA Technology, UK. The flow regions modeled in version 3 of the Continuous Flow Ventricular Assist Device (CF3) are the fully shrouded four bladed impeller and the two clearance regions around the impeller that are bounded by the pump hub and shroud. This paper describes the geometry and computational grids developed for the flow regions, and the equations of motion for the blood flow are developed. The overall numerically-evaluated flow rates and head rise have similar trends to the flow parameters experimentally measured, indicating that future pump designs can be effectively modeled numerically before being constructed and tested. Numerical solutions are presented and compared with experimentally-obtained overall pump performance results. These solutions are used to predict shear stress levels to be experienced by the blood flowing through the pump, and it is predicted that hemolysis will be insignificant. The solutions also indicate no regions of flow stagnation that can be a source of thrombosis in pumps. The calculations provide a viable design method to achieve improved efficiency in future versions of this pump.


Assuntos
Velocidade do Fluxo Sanguíneo , Coração Auxiliar , Centrifugação , Matemática , Modelos Teóricos , Desenho de Prótese , Estresse Mecânico
12.
FEBS Lett ; 330(2): 191-6, 1993 Sep 13.
Artigo em Inglês | MEDLINE | ID: mdl-8365490

RESUMO

Transcarboxylase from Propionibacterium shermanii is a complex biotin-containing enzyme composed of 30 polypeptides of three different types. It is composed of six dimeric outer subunits associated with a central cylindrical hexameric subunit through 12 biotinyl subunits; three outer subunits on each face of the central hexamer. Each outer dimer is termed a 5 S subunit which associates with two biotinyl subunits. The enzyme catalyzes a two-step reaction in which methylmalonyl-CoA and pyruvate form propionyl-CoA and oxalacetate, the 5 S subunit specifically catalyzing one of these reactions. We report here the cloning, sequencing and expression of the monomer of the 5 S subunit. The gene was identified by matching amino acid sequences derived from isolated authentic 5 S peptides with the deduced sequence of an open reading frame present on a cloned P. shermanii genomic fragment known to contain the gene encoding the 1.3 S biotinyl subunit. The cloned 5 S gene encodes a protein of 519 amino acids, M(r) 57,793. The deduced sequence shows regions of extensive homology with that of pyruvate carboxylase and oxalacetate decarboxylase, two enzymes which catalyze the same or reverse reaction. A fragment was subcloned into pUC19 in an orientation such that the 5 S open reading frame could be expressed from the lac promoter of the vector. Crude extracts prepared from these cells contained an immunoreactive band on Western blots which co-migrated with authentic 5 S and were fully active in catalyzing the 5 S partial reaction. We conclude that we have cloned, sequenced and expressed the monomer of the 5 S subunit and that the expressed product is catalytically active.


Assuntos
Carboxil e Carbamoil Transferases , Transferases/genética , Sequência de Aminoácidos , Animais , Sequência de Bases , Clonagem Molecular , DNA Bacteriano , Escherichia coli , Dados de Sequência Molecular , Propionibacterium/enzimologia , Homologia de Sequência de Aminoácidos
13.
J Bacteriol ; 175(17): 5301-8, 1993 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-8366018

RESUMO

Transcarboxylase from Propionibacterium shermanii is a complex biotin-containing enzyme composed of 30 polypeptides of three different types: a hexameric central 12S subunit to which 6 outer 5S subunits are attached through 12 1.3S biotinyl subunits. The enzyme catalyzes a two-step reaction in which methylmalonyl coenzyme A and pyruvate serve as substrates to form propionyl coenzyme A (propionyl-CoA) and oxalacetate, the 12S subunit specifically catalyzing one of the two reactions. We report here the cloning, sequencing, and expression of the 12S subunit. The gene was identified by matching amino acid sequences derived from isolated authentic 12S peptides with the deduced sequence of an open reading frame present in a cloned P. shermanii genomic fragment known to contain the gene encoding the 1.3S biotinyl subunit. The cloned 12S gene encodes a protein of 604 amino acids and of M(r) 65,545. The deduced sequence shows regions of extensive homology with the beta subunit of mammalian propionyl-CoA carboxylase as well as regions of homology with acetyl-CoA carboxylase from several species. Two genomic fragments were subcloned into pUC19 in an orientation such that the 12S open reading frame could be expressed from the lac promoter of the vector. Crude extracts prepared from these cells contained an immunoreactive band on Western blots (immunoblots) which comigrated with authentic 12S. The Escherichia coli-expressed 12S was purified to apparent homogeneity by a three-step procedure and compared with authentic 12S from P. shermanii. Their quaternary structures were identical by electron microscopy, and the E. coli 12S preparation was fully active in the reactions catalyzed by this subunit. We conclude that we have cloned, sequenced, and expressed the 12S subunit which exists in a hexameric active form in E.coli.


Assuntos
Carboxil e Carbamoil Transferases , Propionibacterium/enzimologia , Transferases/química , Sequência de Aminoácidos , Animais , Sequência de Bases , Western Blotting , Clonagem Molecular , DNA Bacteriano , Escherichia coli , Humanos , Dados de Sequência Molecular , Propionibacterium/genética , Homologia de Sequência de Aminoácidos , Transferases/genética , Transferases/metabolismo
14.
J Biol Chem ; 268(22): 16413-9, 1993 Aug 05.
Artigo em Inglês | MEDLINE | ID: mdl-8344927

RESUMO

Transcarboxylase from Propionibacterium shermanii is a biotin-containing enzyme which catalyzes the reversible transfer of a carboxyl group from methylmalonyl-CoA to pyruvate. The central hexameric 12 S subunit of the enzyme associates with six 6 S subunits in the complete enzyme complex. We have constructed a series of cloned genes which encode COOH-terminal truncations of the 12 S subunit. Five of these subunits, which remained soluble following expression in Escherichia coli and were missing from 39 to 97 COOH-terminal amino acids, were purified and compared to the full-length subunit after enzyme complexes were assembled in vitro. All of the truncated subunits were 90% as active in the transcarboxylase reaction as wild type except the reaction containing the shortest complex, TC-12 S (1-507), which had 54% of the wild type activity (TC-12 S-WT). The reduced activity was not due to a lack of CoA ester binding sites or the Km for substrate. However, TC-12 S (1-507) was slower to form than TC-12 S-WT and had more incomplete complexes as judged by high performance liquid chromatography gel filtration profiles and electron microscopy. Isolated TC-12 S (1-507) was 70-80% as active as TC-12 S-WT. We also noted that the truncated form was heat-labile compared to wild type. We conclude that the COOH-terminal region of the 12 S subunit plays a role in assembly and stability of the hexamer and also affects the binding of 6 S subunits to form enzyme complexes. Once complexes do form, the catalytic capacity of TC-12 S (1-507) is almost the same as TC-12 S-WT.


Assuntos
Carboxil e Carbamoil Transferases , Transferases/metabolismo , Acil Coenzima A/metabolismo , Sequência de Bases , Sítios de Ligação/genética , Ácidos Carboxílicos , Cromatografia Líquida de Alta Pressão , Clonagem Molecular , DNA Bacteriano , Temperatura Alta , Cinética , Microscopia Eletrônica , Dados de Sequência Molecular , Propionibacterium/enzimologia , Deleção de Sequência , Transferases/química , Transferases/genética , Transferases/ultraestrutura
15.
Arch Biochem Biophys ; 300(1): 309-19, 1993 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-8380966

RESUMO

The glucokinase (EC 2.7.1.63) from Propionibacterium shermanii phosphorylates glucose using inorganic polyphosphate (poly(P)) or ATP as the phosphate donor. In this investigation, we have purified the glucokinase to homogeneity, using two methods and show that the polyphosphate and ATP-dependent glucokinase activities eluted as a single protein. The protein peak is shown to be homogeneous by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, reverse phase HPLC, and N-terminal sequence analysis. The purified protein eluted as a single peak from gel filtration and hydrophobic interaction HPLC columns and was found to display both the poly(P) and ATP glucokinase activities. Likewise, the two activities comigrated on a native isoelectric focusing gel. In addition, two analogues of ATP with different reactive groups displayed different inhibition patterns with respect to ATP and poly(P). The 2',3'-dialdehyde of ATP, whose reactive group is the dialdehyde of the ribose ring, showed competitive and noncompetitive patterns with respect to ATP and poly(P), respectively. While, 5'-p-fluorosulfonylbenzoyl adenosine, whose reactive sulfonyl fluoride group is related to the gamma-phosphoryl group of ATP, displayed competitive inhibition patterns with both ATP and poly(P). These observations provide evidence that the polyphosphate and ATP-dependent glucokinase activities of P. shermanii are the catalytic properties of a single enzyme and that the two substrates may have different binding sites on the enzyme with a common phosphorylating center.


Assuntos
Trifosfato de Adenosina/metabolismo , Glucoquinase/metabolismo , Polifosfatos/metabolismo , Propionibacterium/enzimologia , Sítios de Ligação , Cromatografia , Cromatografia em Gel , Cromatografia Líquida de Alta Pressão , Durapatita , Eletroforese em Gel de Poliacrilamida , Glucoquinase/isolamento & purificação , Hidroxiapatitas , Cinética , Especificidade por Substrato
16.
J Biol Chem ; 267(26): 18407-12, 1992 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-1526981

RESUMO

Almost all biotin enzymes contain the conserved tetrapeptide Ala-Met-Bct-Met (Bct, N epsilon-biotinyl-L-lysine). In the 1.3 S biotinyl subunit of transcarboxylase (TC), this sequence is present between positions 87 and 90. The conserved nature of these amino acids implies a critical role in the function of biotin enzymes. In order to examine the role of these conserved amino acids, point mutations in the gene encoding the 1.3 S subunit have been made by site-directed mutagenesis to generate A87G, M88L, M90L, M88T, M88C, M88A, and a double mutant A87M, M88A in the 1.3 S subunit. TC, a multisubunit enzyme containing 12 S, 5 S, and 1.3 S subunits, catalyzes the transfer of a carboxyl group from methylmalonyl-CoA to pyruvate (overall reaction). TC can be dissociated into individual subunits and also reconstituted by assembling isolated subunits to a fully active form. The mutants of the 1.3 S subunit have been reconstituted with native 5 S and 12 S subunits from Propionibacterium shermanii. The effects of mutations on the activity of TC were compared with that of TC-1.3 S wild type (WT) prepared in a similar manner. The results show that any substitution of a residue in the conserved tetrapeptide causes impairment of the rate of TC activity. Comparison of gel filtration profiles, sodium dodecyl sulfate-polyacrylamide gel electrophoresis and electron micrographs of the TC assembled with mutant 1.3 S and with wild type 1.3 S subunits showed that the impairment of the overall activity was not due to a failure of the subunits to assemble into complexes. Steady state kinetic analysis using the mutant 1.3 S subunits indicated that the Km for methylmalonyl-CoA or pyruvate did not change significantly indicating that the binding of substrates is not altered. However, the kcat values were significantly lower for mutants at positions 87 and 88 than for those at position 90. The replacement of methionine at position 88 either by hydrophobic or hydrophilic residues significantly altered the activity in the overall reaction, while similar substitution at position 90 did not dramatically alter the kcat. These results suggest that Ala-87 and Met-88 are catalytically critical in the conserved tetrapeptide.


Assuntos
Carboxil e Carbamoil Transferases , Metionina/metabolismo , Mutagênese Sítio-Dirigida , Transferases/metabolismo , Sequência de Aminoácidos , Sequência de Bases , Catálise , Cromatografia Líquida de Alta Pressão , Eletroforese em Gel de Poliacrilamida , Cinética , Dados de Sequência Molecular , Mutação , Propionibacterium/metabolismo , Homologia de Sequência do Ácido Nucleico
17.
J Biol Chem ; 267(2): 897-900, 1992 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-1730678

RESUMO

Acetogenic bacteria, as determined with Clostridium thermoaceticum, synthesize acetate by the acetyl-CoA pathway which involves the reduction of CO2 to a methyl group and then combination of the methyl with CoA and a carbonyl group formed from CO or CO2 (Wood, H.G., Ragsdale, S.W., and Pezacka, E. (1986) Trends Biochem. Sci. 11, 14-18). Carbon monoxide dehydrogenase (CODH), the key enzyme in this pathway not only catalyzes the oxidation of CO to CO2 but also the final step, the synthesis of acetyl-CoA from a methyl group, CO, and CoA. Previously, it has been shown that ferredoxin can stimulate exchange of CO with CH3 14COSCoA (Ragsdale, S.W., and Wood, H.G. (1985) J. Biol. Chem. 260, 3970-3977). In the present study, it has been observed that ferredoxin and CODH can form an electrostatically stabilized complex. In order to identify the ferredoxin binding region on CODH, the ferredoxin and CODH were cross-linked by using 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide. The cross-linked CODH-ferredoxin adduct was enzymatically as active as the uncross-linked complex. The native CODH and cross-linked CODH-ferredoxin complex were subjected to cyanogen bromide cleavage. By comparison of the high-performance liquid chromatography peptide profiles, it was observed that the mobility of at least one peptide is altered in the CODH-ferredoxin cross-linked complex. The peptide was identified with residues 229-239 of the alpha-subunit of CODH.


Assuntos
Aldeído Oxirredutases/metabolismo , Clostridium/enzimologia , Ferredoxinas/metabolismo , Complexos Multienzimáticos , Sequência de Aminoácidos , Catálise , Cromatografia Líquida de Alta Pressão , Reagentes de Ligações Cruzadas , Brometo de Cianogênio , Etildimetilaminopropil Carbodi-Imida/química , Dados de Sequência Molecular , Concentração Osmolar , Oxirredução
18.
J Biol Chem ; 266(35): 23824-8, 1991 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-1748656

RESUMO

CO dehydrogenase/acetyl-coenzyme A synthase (CODH) is the central enzyme in the pathway of acetyl-coenzyme A biosynthesis in Clostridium thermoaceticum. It catalyzes the interconversion of CO and CO2 and the synthesis of acetyl-coenzyme A from the methylated corrinoid/iron sulfur protein, CO, and coenzyme A. It is a nickel-iron-sulfur protein and contains two subunits in the form (alpha beta)3. Reported here is the cloning and sequencing of the genes for both subunits of CODH. The gene for the alpha subunit codes for a protein with 729 amino acids and a molecular weight of 81,730, and the beta gene for a protein with 674 amino acids and a molecular weight of 72,928. The alpha subunit follows the beta subunit by 23 bases and the genes for both subunits are preceded by a sequence which is similar to the Shine-Dalgarno sequence of Escherichia coli. No significant amino acid sequence homology has been found to any known sequence. Labeling CODH with 2,4-dinitrophenylsulfenyl chloride and isolating labeled peptide fragments demonstrated that a tryptophan, residue 418 of the alpha subunit, is protected by coenzyme A and thus may be considered a potential part of the coenzyme A site.


Assuntos
Aldeído Oxirredutases/genética , Clostridium/enzimologia , Complexos Multienzimáticos , Sequência de Aminoácidos , Sequência de Bases , Clonagem Molecular , Clostridium/genética , DNA Bacteriano/genética , DNA Bacteriano/isolamento & purificação , Genes Bacterianos , Substâncias Macromoleculares , Dados de Sequência Molecular , Mapeamento por Restrição
19.
FASEB J ; 5(2): 156-63, 1991 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-1900793

RESUMO

An account is presented of the recent discovery of a pathway of growth by bacteria in which CO or CO2 and H2 are sources of carbon and energy. The Calvin cycle and subsequently other cycles were discovered in the 1950s, and in each the initial reaction of CO2 involved adding CO2 to an organic compound formed during the cyclic pathway (for example, CO2 and ribulose diphosphate). Studies were initiated in the 1950s with the thermophylic anaerobic organism Clostridium thermoaceticum, which Barker and Kamen had found fixed CO2 in both carbons of acetate during fermentation of glucose. The pathway of acetyl-CoA biosynthesis differs from all others in that two CO2 are combined with coenzyme A (CoASH) forming acetyl CoA, which then serves as the source of carbon for growth. This mechanism is designated the acetyl CoA pathway and some have called it the Wood pathway. A unique feature is the role of the enzyme carbon monoxide dehydrogenase (CODH), which catalyzes the conversion of CoASH, CO, and a methyl group to acetyl CoA, the final step of the pathway. The pathway involves the reduction of CO2 to formate, which then combines with tetrahydrofolate (THF) to form formyl THF. It in turn is reduced to CH3-THF. The methyl is then transferred to the cobalt on a corrinoid-containing enzyme. From there the methyl is transferred to CODH, and CO and CoASH bind with the enzyme at separate sites. Acetyl CoA is then synthesized. CODH would more properly be called carbon monoxide dehydrogenase-acetyl CoA synthase as it catalyzes oxidation of CO to CO2 and the synthesis of acetyl CoA. The solution of the mechanism of this pathway required more than 30 years, in part because the intermediate compounds are bound to enzymes, the enzymes are extremely sensitive to O2 and must be isolated under strictly anerobic conditions, and the role of a corrinoid and CODH was unprecedented. It is now apparent that this pathway occurs (perhaps with some modification) in many bacteria including the methane and sulfur bacteria. In some humans this pathway is catalyzed by the bacteria of the gut and acetate is produced rather than methane; it is calculated that 2.3 x 10(6) metric tons of acetate are formed daily from CO2. A similar synthesis occurs in the hind gut of termites. It is becoming apparent that the acetyl CoA pathway plays a significant role in the carbon cycle.(ABSTRACT TRUNCATED AT 400 WORDS)


Assuntos
Dióxido de Carbono/química , Monóxido de Carbono/química , Hidrogênio/química , Acetatos , Acetilcoenzima A
20.
Biochemistry ; 28(17): 7112-6, 1989 Aug 22.
Artigo em Inglês | MEDLINE | ID: mdl-2819052

RESUMO

Carbon monoxide dehydrogenase (CODH) is the key enzyme of autotrophic growth with CO or CO2 and H2 by the acetyl-CoA pathway. The enzyme from Clostridium thermoaceticum catalyzes the formation of acetyl-CoA from the methyl, carbonyl, and CoA groups and has separate binding sites for these moieties. In this study, we have determined the role of arginine residues in binding of CoA by CODH. Phenylglyoxal, an arginine-specific reagent, inactivated CODH, and CoA afforded about 80-85% protection against this inactivation. The other ligands, such as the carbonyl and the methyl groups, gave no protection. By circular dichroism, it was shown that the loss of activity is not due to extensive structural changes in CODH. Earlier, we showed that tryptophan residues are located at the CoA binding site of CODH [Shanmugasundaram, T., Kumar, G. K., & Wood, H. G. (1988) Biochemistry 27, 6499-6503]. A comparison of the fluorescence spectra of the native and phenylglyoxal-modified enzymes indicates that the reactive arginine residues appear to be located close to fluorescing tryptophans. Fluorescence spectral studies with CoA analogues or its components showed that CoA interacts with the tryptophan(s) of CODH through its adenine moiety. In addition, evidence is presented that the arginines interact with the pyrophosphate moiety of CoA.


Assuntos
Aldeído Oxirredutases/metabolismo , Aldeídos/farmacologia , Arginina , Clostridium/enzimologia , Complexos Multienzimáticos , Fenilglioxal/farmacologia , Aldeído Oxirredutases/antagonistas & inibidores , Dicroísmo Circular , Coenzima A/farmacologia , Cinética , Conformação Proteica , Espectrometria de Fluorescência
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